Ggra726.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra726.t1
Unique Name	Ggra726.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	846

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000204_pilon	contig	tig00000204_pilon:22865..25402 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra726	Ggra726	Gracilaria gracilis GNS1m male	gene	tig00000204_pilon 22865..25402 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra726.t1.start1	Ggra726.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000204_pilon 22865..22867 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra726.t1.CDS1	Ggra726.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000204_pilon 22865..25402 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra726.t1.exon1	Ggra726.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000204_pilon 22865..25402 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra726.t1.stop1	Ggra726.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000204_pilon 25400..25402 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra726.t1	Ggra726.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000204_pilon 22865..25402 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000204_pilon:22865..25402+
coding sequence from alignment at tig00000204_pilon:22865..25402+

mRNA sequence

>Ggra726.t1 ID=Ggra726.t1|Name=Ggra726.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=846bp
MSNRPLPRSTTASAMDVSHRRQQQRAPSFDGLVAGGKPARDPYLTRVVIM
VDEATEPGLTDEQAAKHRSAIVSLLLNRGQNMPHSLHNTDPGPAVAYALR
KRLKSEDELAVLSTLTLLDELMRVVPYFYRQVANEKFFRRLWRFVVPDYK
NGVKSMIPIFGKPKLHAGYRDHSEVANRVKILIRAWAEELSVMFEGRYEP
HAGFLIERYNSKRIRIPFPEVPRTGTPWVCPVDLSRLSSYFKETKTRAPT
EEAITLAGAENTVELFANLVENASRIEDLKEEVCQELAQRCRHISNNLTK
LSMSMSKEEELTRAIAVSEKLQKALALYKRSLENGRVERAIPVVDSASLE
SEEERYDRGGPRPMSSRSLERYNSMPPRSFQYSDSSEYSSSGKRDWDSRE
KADWRTKDRPQRTRYDPEKASESRRAPPVEEREERPRPREYRRSVTVTPT
SKRRGSHEENDKDVSADKREKRQLTKARSRREKSDSDLPKVAKEKKKPSS
SKKKNLISVQDGTSSESSSEEEDTNAQAFTMLAERYSTKTSQKHKSKPRE
SRHTKAAKQSSAQASSSTTTPSSSTQNMPPISNLSLNPAAYYSSMPGMGY
NPMMMMPNPYAMYGSVAHVPMQDPMGMYKAYQTVNPAMYYNTVSPQMYSS
FSPNVPGLTQMPNFQMAGGGPSSAAGQSSSAPTPSLPGPSVDANTGTGQL
ETSGIPAEGPGSQNPSSLSGSALAPPLMNSYYSSVPGMSVMPQPMMAQPG
FVSNPQDATTGTTAVGNQSVADGQAEAYRNAMNQAAVAYHAAAAMYRSVQ
GEAPVVSQQMHPTNVPNSGRTLSPKNSSVPSGSVSAVAKGEETKE*

spliced messenger RNA

>Ggra726.t1 ID=Ggra726.t1|Name=Ggra726.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2538bp|location=Sequence derived from alignment at tig00000204_pilon:22865..25402+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAACCGACCTCTTCCTCGGTCTACCACTGCCTCTGCCATGGATGT
CTCACATCGTCGCCAGCAACAGCGCGCTCCTTCTTTTGACGGCCTCGTTG
CCGGCGGCAAACCAGCCCGCGACCCGTACTTGACCCGCGTGGTAATTATG
GTCGACGAAGCAACTGAACCCGGATTGACAGACGAACAGGCGGCAAAGCA
TCGATCAGCTATCGTCAGCCTGTTGCTCAATAGGGGTCAGAATATGCCAC
ATTCGCTGCATAACACTGACCCCGGTCCAGCTGTTGCGTACGCGTTACGG
AAAAGACTCAAGAGTGAGGATGAGCTTGCCGTGCTTAGCACTCTCACTCT
GCTCGATGAGCTCATGCGCGTCGTACCCTACTTCTATCGCCAAGTTGCAA
ACGAAAAGTTCTTTAGACGTCTGTGGCGCTTCGTTGTGCCAGACTACAAG
AATGGCGTCAAGTCTATGATTCCAATATTCGGAAAGCCCAAGCTGCATGC
TGGTTATCGTGACCACTCAGAAGTGGCCAATAGAGTCAAGATTTTAATCA
GGGCCTGGGCAGAAGAGCTTTCTGTTATGTTTGAGGGTCGTTATGAACCA
CATGCTGGGTTCCTCATCGAGCGCTACAATAGCAAGCGTATTCGCATCCC
TTTCCCGGAAGTCCCTAGAACCGGAACCCCATGGGTCTGTCCCGTAGATC
TTTCGAGACTTAGCTCGTACTTCAAGGAGACAAAGACCCGTGCGCCAACT
GAAGAAGCCATAACTCTTGCTGGGGCCGAGAATACTGTCGAATTGTTTGC
CAATTTGGTAGAGAATGCCAGCCGCATTGAAGACTTGAAAGAAGAAGTCT
GTCAAGAACTAGCGCAACGGTGCAGGCATATATCGAACAATCTAACAAAA
CTTAGCATGAGCATGAGCAAAGAAGAAGAGTTAACCCGCGCAATTGCTGT
TAGTGAAAAGCTTCAAAAAGCTCTCGCGCTGTATAAGCGAAGCTTGGAGA
ATGGGAGAGTTGAACGAGCTATTCCTGTCGTTGATTCAGCTAGTCTGGAA
AGTGAGGAAGAAAGATACGACCGTGGAGGCCCGAGGCCGATGTCGTCCAG
AAGTCTTGAGCGATACAACAGCATGCCTCCCCGATCCTTTCAGTATAGTG
ATTCTTCGGAGTACTCGAGTTCAGGGAAGCGTGATTGGGATAGTCGCGAA
AAAGCAGACTGGCGCACAAAAGATCGACCTCAACGTACAAGATATGATCC
AGAAAAAGCTTCAGAGAGCAGACGCGCTCCTCCGGTTGAAGAACGTGAAG
AGCGACCGCGCCCTAGGGAGTATAGACGGAGCGTCACCGTGACTCCGACT
TCAAAGCGAAGGGGATCTCATGAAGAGAATGACAAAGACGTATCCGCAGA
TAAGCGAGAGAAACGCCAGTTGACGAAGGCAAGAAGTCGCCGGGAGAAGA
GTGACAGTGATTTGCCAAAAGTAGCGAAGGAGAAGAAGAAACCAAGTTCC
TCTAAGAAGAAGAATCTTATCTCTGTTCAGGATGGAACTTCCTCTGAGTC
TTCTTCAGAAGAGGAAGACACGAATGCCCAAGCATTTACAATGCTGGCAG
AAAGATATTCAACCAAAACATCTCAGAAGCATAAAAGCAAACCACGGGAA
TCAAGACATACGAAAGCTGCAAAGCAATCTTCAGCCCAGGCAAGCAGCTC
TACGACTACTCCAAGCTCGAGCACTCAGAATATGCCACCAATCTCCAACC
TGTCTTTAAACCCGGCGGCCTACTATTCTTCTATGCCAGGAATGGGATAT
AATCCGATGATGATGATGCCTAACCCGTATGCCATGTACGGTTCTGTGGC
ACATGTGCCCATGCAGGACCCAATGGGGATGTACAAAGCTTATCAAACCG
TGAACCCAGCGATGTATTACAATACAGTTAGTCCCCAAATGTATTCATCA
TTTTCGCCGAACGttcccggactaacgcaaatgccaaactttcagatggc
gggaggtggtccatcttcggcggctggacaatccagttctgcaccaaccc
cGTCGCTTCCGGGACCGAGTGTTGACGCCAATACTGGAACAGGCCAATTG
GAGACTTCGGGAATCCCTGCTGAGGGACCTGGTTCTCAGAACCCGTCATC
CCTGTCTGGTTCAGCGCTCGCTCCGCCCTTGATGAATTCCTATTATTCAA
GTGTCCCGGGAATGTCCGTTATGCCACAACCTATGATGGCACAACCTGGA
TTTGTTTCAAACCCTCAGGATGCTACAACCGGTACAACAGCTGTTGGCAA
TCAATCTGTCGCAGACGGTCAGGCAGAAGCATACAGGAATGCAATGAACC
AAGCAGCGGTTGCATATCATGCCGCGGCGGCCATGTATCGGAGCGTTCAA
GGAGAAGCTCCTGTCGTCTCACAGCAGATGCACCCGACTAATGTGCCAAA
TAGTGGCAGAACTCTTTCTCCGAAGAACAGCTCTGTTCCATCCGGTTCTG
TATCTGCAGTAGCCAAAGGAGAAGAAACTAAGGAGTAA

protein sequence of Ggra726.t1

>Ggra726.t1 ID=Ggra726.t1|Name=Ggra726.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=846bp
MSNRPLPRSTTASAMDVSHRRQQQRAPSFDGLVAGGKPARDPYLTRVVIM
VDEATEPGLTDEQAAKHRSAIVSLLLNRGQNMPHSLHNTDPGPAVAYALR
KRLKSEDELAVLSTLTLLDELMRVVPYFYRQVANEKFFRRLWRFVVPDYK
NGVKSMIPIFGKPKLHAGYRDHSEVANRVKILIRAWAEELSVMFEGRYEP
HAGFLIERYNSKRIRIPFPEVPRTGTPWVCPVDLSRLSSYFKETKTRAPT
EEAITLAGAENTVELFANLVENASRIEDLKEEVCQELAQRCRHISNNLTK
LSMSMSKEEELTRAIAVSEKLQKALALYKRSLENGRVERAIPVVDSASLE
SEEERYDRGGPRPMSSRSLERYNSMPPRSFQYSDSSEYSSSGKRDWDSRE
KADWRTKDRPQRTRYDPEKASESRRAPPVEEREERPRPREYRRSVTVTPT
SKRRGSHEENDKDVSADKREKRQLTKARSRREKSDSDLPKVAKEKKKPSS
SKKKNLISVQDGTSSESSSEEEDTNAQAFTMLAERYSTKTSQKHKSKPRE
SRHTKAAKQSSAQASSSTTTPSSSTQNMPPISNLSLNPAAYYSSMPGMGY
NPMMMMPNPYAMYGSVAHVPMQDPMGMYKAYQTVNPAMYYNTVSPQMYSS
FSPNVPGLTQMPNFQMAGGGPSSAAGQSSSAPTPSLPGPSVDANTGTGQL
ETSGIPAEGPGSQNPSSLSGSALAPPLMNSYYSSVPGMSVMPQPMMAQPG
FVSNPQDATTGTTAVGNQSVADGQAEAYRNAMNQAAVAYHAAAAMYRSVQ
GEAPVVSQQMHPTNVPNSGRTLSPKNSSVPSGSVSAVAKGEETKE*

mRNA from alignment at tig00000204_pilon:22865..25402+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra726.t1 ID=Ggra726.t1|Name=Ggra726.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2538bp|location=Sequence derived from alignment at tig00000204_pilon:22865..25402+ (Gracilaria gracilis GNS1m male)
ATGAGCAACCGACCTCTTCCTCGGTCTACCACTGCCTCTGCCATGGATGT
CTCACATCGTCGCCAGCAACAGCGCGCTCCTTCTTTTGACGGCCTCGTTG
CCGGCGGCAAACCAGCCCGCGACCCGTACTTGACCCGCGTGGTAATTATG
GTCGACGAAGCAACTGAACCCGGATTGACAGACGAACAGGCGGCAAAGCA
TCGATCAGCTATCGTCAGCCTGTTGCTCAATAGGGGTCAGAATATGCCAC
ATTCGCTGCATAACACTGACCCCGGTCCAGCTGTTGCGTACGCGTTACGG
AAAAGACTCAAGAGTGAGGATGAGCTTGCCGTGCTTAGCACTCTCACTCT
GCTCGATGAGCTCATGCGCGTCGTACCCTACTTCTATCGCCAAGTTGCAA
ACGAAAAGTTCTTTAGACGTCTGTGGCGCTTCGTTGTGCCAGACTACAAG
AATGGCGTCAAGTCTATGATTCCAATATTCGGAAAGCCCAAGCTGCATGC
TGGTTATCGTGACCACTCAGAAGTGGCCAATAGAGTCAAGATTTTAATCA
GGGCCTGGGCAGAAGAGCTTTCTGTTATGTTTGAGGGTCGTTATGAACCA
CATGCTGGGTTCCTCATCGAGCGCTACAATAGCAAGCGTATTCGCATCCC
TTTCCCGGAAGTCCCTAGAACCGGAACCCCATGGGTCTGTCCCGTAGATC
TTTCGAGACTTAGCTCGTACTTCAAGGAGACAAAGACCCGTGCGCCAACT
GAAGAAGCCATAACTCTTGCTGGGGCCGAGAATACTGTCGAATTGTTTGC
CAATTTGGTAGAGAATGCCAGCCGCATTGAAGACTTGAAAGAAGAAGTCT
GTCAAGAACTAGCGCAACGGTGCAGGCATATATCGAACAATCTAACAAAA
CTTAGCATGAGCATGAGCAAAGAAGAAGAGTTAACCCGCGCAATTGCTGT
TAGTGAAAAGCTTCAAAAAGCTCTCGCGCTGTATAAGCGAAGCTTGGAGA
ATGGGAGAGTTGAACGAGCTATTCCTGTCGTTGATTCAGCTAGTCTGGAA
AGTGAGGAAGAAAGATACGACCGTGGAGGCCCGAGGCCGATGTCGTCCAG
AAGTCTTGAGCGATACAACAGCATGCCTCCCCGATCCTTTCAGTATAGTG
ATTCTTCGGAGTACTCGAGTTCAGGGAAGCGTGATTGGGATAGTCGCGAA
AAAGCAGACTGGCGCACAAAAGATCGACCTCAACGTACAAGATATGATCC
AGAAAAAGCTTCAGAGAGCAGACGCGCTCCTCCGGTTGAAGAACGTGAAG
AGCGACCGCGCCCTAGGGAGTATAGACGGAGCGTCACCGTGACTCCGACT
TCAAAGCGAAGGGGATCTCATGAAGAGAATGACAAAGACGTATCCGCAGA
TAAGCGAGAGAAACGCCAGTTGACGAAGGCAAGAAGTCGCCGGGAGAAGA
GTGACAGTGATTTGCCAAAAGTAGCGAAGGAGAAGAAGAAACCAAGTTCC
TCTAAGAAGAAGAATCTTATCTCTGTTCAGGATGGAACTTCCTCTGAGTC
TTCTTCAGAAGAGGAAGACACGAATGCCCAAGCATTTACAATGCTGGCAG
AAAGATATTCAACCAAAACATCTCAGAAGCATAAAAGCAAACCACGGGAA
TCAAGACATACGAAAGCTGCAAAGCAATCTTCAGCCCAGGCAAGCAGCTC
TACGACTACTCCAAGCTCGAGCACTCAGAATATGCCACCAATCTCCAACC
TGTCTTTAAACCCGGCGGCCTACTATTCTTCTATGCCAGGAATGGGATAT
AATCCGATGATGATGATGCCTAACCCGTATGCCATGTACGGTTCTGTGGC
ACATGTGCCCATGCAGGACCCAATGGGGATGTACAAAGCTTATCAAACCG
TGAACCCAGCGATGTATTACAATACAGTTAGTCCCCAAATGTATTCATCA
TTTTCGCCGAACGttcccggactaacgcaaatgccaaactttcagatggc
gggaggtggtccatcttcggcggctggacaatccagttctgcaccaaccc
cGTCGCTTCCGGGACCGAGTGTTGACGCCAATACTGGAACAGGCCAATTG
GAGACTTCGGGAATCCCTGCTGAGGGACCTGGTTCTCAGAACCCGTCATC
CCTGTCTGGTTCAGCGCTCGCTCCGCCCTTGATGAATTCCTATTATTCAA
GTGTCCCGGGAATGTCCGTTATGCCACAACCTATGATGGCACAACCTGGA
TTTGTTTCAAACCCTCAGGATGCTACAACCGGTACAACAGCTGTTGGCAA
TCAATCTGTCGCAGACGGTCAGGCAGAAGCATACAGGAATGCAATGAACC
AAGCAGCGGTTGCATATCATGCCGCGGCGGCCATGTATCGGAGCGTTCAA
GGAGAAGCTCCTGTCGTCTCACAGCAGATGCACCCGACTAATGTGCCAAA
TAGTGGCAGAACTCTTTCTCCGAAGAACAGCTCTGTTCCATCCGGTTCTG
TATCTGCAGTAGCCAAAGGAGAAGAAACTAAGGAGTAA

Coding sequence (CDS) from alignment at tig00000204_pilon:22865..25402+

>Ggra726.t1 ID=Ggra726.t1|Name=Ggra726.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2538bp|location=Sequence derived from alignment at tig00000204_pilon:22865..25402+ (Gracilaria gracilis GNS1m male)
ATGAGCAACCGACCTCTTCCTCGGTCTACCACTGCCTCTGCCATGGATGT
CTCACATCGTCGCCAGCAACAGCGCGCTCCTTCTTTTGACGGCCTCGTTG
CCGGCGGCAAACCAGCCCGCGACCCGTACTTGACCCGCGTGGTAATTATG
GTCGACGAAGCAACTGAACCCGGATTGACAGACGAACAGGCGGCAAAGCA
TCGATCAGCTATCGTCAGCCTGTTGCTCAATAGGGGTCAGAATATGCCAC
ATTCGCTGCATAACACTGACCCCGGTCCAGCTGTTGCGTACGCGTTACGG
AAAAGACTCAAGAGTGAGGATGAGCTTGCCGTGCTTAGCACTCTCACTCT
GCTCGATGAGCTCATGCGCGTCGTACCCTACTTCTATCGCCAAGTTGCAA
ACGAAAAGTTCTTTAGACGTCTGTGGCGCTTCGTTGTGCCAGACTACAAG
AATGGCGTCAAGTCTATGATTCCAATATTCGGAAAGCCCAAGCTGCATGC
TGGTTATCGTGACCACTCAGAAGTGGCCAATAGAGTCAAGATTTTAATCA
GGGCCTGGGCAGAAGAGCTTTCTGTTATGTTTGAGGGTCGTTATGAACCA
CATGCTGGGTTCCTCATCGAGCGCTACAATAGCAAGCGTATTCGCATCCC
TTTCCCGGAAGTCCCTAGAACCGGAACCCCATGGGTCTGTCCCGTAGATC
TTTCGAGACTTAGCTCGTACTTCAAGGAGACAAAGACCCGTGCGCCAACT
GAAGAAGCCATAACTCTTGCTGGGGCCGAGAATACTGTCGAATTGTTTGC
CAATTTGGTAGAGAATGCCAGCCGCATTGAAGACTTGAAAGAAGAAGTCT
GTCAAGAACTAGCGCAACGGTGCAGGCATATATCGAACAATCTAACAAAA
CTTAGCATGAGCATGAGCAAAGAAGAAGAGTTAACCCGCGCAATTGCTGT
TAGTGAAAAGCTTCAAAAAGCTCTCGCGCTGTATAAGCGAAGCTTGGAGA
ATGGGAGAGTTGAACGAGCTATTCCTGTCGTTGATTCAGCTAGTCTGGAA
AGTGAGGAAGAAAGATACGACCGTGGAGGCCCGAGGCCGATGTCGTCCAG
AAGTCTTGAGCGATACAACAGCATGCCTCCCCGATCCTTTCAGTATAGTG
ATTCTTCGGAGTACTCGAGTTCAGGGAAGCGTGATTGGGATAGTCGCGAA
AAAGCAGACTGGCGCACAAAAGATCGACCTCAACGTACAAGATATGATCC
AGAAAAAGCTTCAGAGAGCAGACGCGCTCCTCCGGTTGAAGAACGTGAAG
AGCGACCGCGCCCTAGGGAGTATAGACGGAGCGTCACCGTGACTCCGACT
TCAAAGCGAAGGGGATCTCATGAAGAGAATGACAAAGACGTATCCGCAGA
TAAGCGAGAGAAACGCCAGTTGACGAAGGCAAGAAGTCGCCGGGAGAAGA
GTGACAGTGATTTGCCAAAAGTAGCGAAGGAGAAGAAGAAACCAAGTTCC
TCTAAGAAGAAGAATCTTATCTCTGTTCAGGATGGAACTTCCTCTGAGTC
TTCTTCAGAAGAGGAAGACACGAATGCCCAAGCATTTACAATGCTGGCAG
AAAGATATTCAACCAAAACATCTCAGAAGCATAAAAGCAAACCACGGGAA
TCAAGACATACGAAAGCTGCAAAGCAATCTTCAGCCCAGGCAAGCAGCTC
TACGACTACTCCAAGCTCGAGCACTCAGAATATGCCACCAATCTCCAACC
TGTCTTTAAACCCGGCGGCCTACTATTCTTCTATGCCAGGAATGGGATAT
AATCCGATGATGATGATGCCTAACCCGTATGCCATGTACGGTTCTGTGGC
ACATGTGCCCATGCAGGACCCAATGGGGATGTACAAAGCTTATCAAACCG
TGAACCCAGCGATGTATTACAATACAGTTAGTCCCCAAATGTATTCATCA
TTTTCGCCGAACGttcccggactaacgcaaatgccaaactttcagatggc
gggaggtggtccatcttcggcggctggacaatccagttctgcaccaaccc
cGTCGCTTCCGGGACCGAGTGTTGACGCCAATACTGGAACAGGCCAATTG
GAGACTTCGGGAATCCCTGCTGAGGGACCTGGTTCTCAGAACCCGTCATC
CCTGTCTGGTTCAGCGCTCGCTCCGCCCTTGATGAATTCCTATTATTCAA
GTGTCCCGGGAATGTCCGTTATGCCACAACCTATGATGGCACAACCTGGA
TTTGTTTCAAACCCTCAGGATGCTACAACCGGTACAACAGCTGTTGGCAA
TCAATCTGTCGCAGACGGTCAGGCAGAAGCATACAGGAATGCAATGAACC
AAGCAGCGGTTGCATATCATGCCGCGGCGGCCATGTATCGGAGCGTTCAA
GGAGAAGCTCCTGTCGTCTCACAGCAGATGCACCCGACTAATGTGCCAAA
TAGTGGCAGAACTCTTTCTCCGAAGAACAGCTCTGTTCCATCCGGTTCTG
TATCTGCAGTAGCCAAAGGAGAAGAAACTAAGGAGTAA