Ggra7249.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7249.t1
Unique NameGgra7249.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length679
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:446661..448938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7249Ggra7249Gracilaria gracilis GNS1m malegenetig00000871_pilon 446661..448938 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7249.t1Ggra7249.t1Gracilaria gracilis GNS1m malepolypeptidetig00000871_pilon 446661..448938 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7249.t1.stop1Ggra7249.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000871_pilon 446661..446663 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7249.t1.CDS1Ggra7249.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000871_pilon 446661..447632 -
Ggra7249.t1.CDS2Ggra7249.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000871_pilon 447742..448259 -
Ggra7249.t1.CDS3Ggra7249.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000871_pilon 448317..448683 -
Ggra7249.t1.CDS4Ggra7249.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000871_pilon 448759..448938 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7249.t1.exon1Ggra7249.t1.exon1Gracilaria gracilis GNS1m maleexontig00000871_pilon 446661..447632 -
Ggra7249.t1.exon2Ggra7249.t1.exon2Gracilaria gracilis GNS1m maleexontig00000871_pilon 447742..448259 -
Ggra7249.t1.exon3Ggra7249.t1.exon3Gracilaria gracilis GNS1m maleexontig00000871_pilon 448317..448683 -
Ggra7249.t1.exon4Ggra7249.t1.exon4Gracilaria gracilis GNS1m maleexontig00000871_pilon 448759..448938 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7249.t1.intron1Ggra7249.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000871_pilon 447633..447741 -
Ggra7249.t1.intron2Ggra7249.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000871_pilon 448260..448316 -
Ggra7249.t1.intron3Ggra7249.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000871_pilon 448684..448758 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7249.t1.start1Ggra7249.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000871_pilon 448936..448938 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7249.t1 ID=Ggra7249.t1|Name=Ggra7249.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=679bp
MPSPRSSQSRVRQVEAFIPSPEKPTDQEAIGIVNKNPTSAVDLDTDTQFE
DNDSQSLLPTNLNQYLQRSHDHSIDNSDDDPTYLYSLSQTTATTSTLSAD
AQQEEAVSDCEVRELHREKNKCAAKHSLDTVTSNRIESQTMAVEDVWSSL
FSNEMDCTLEDSLDSSGATMSIGSDIDADNERELDIDGINENLGKHFVEE
TNTVLRNVVKNIQESPTGDRALNESSLPRLAAFDVFLPAYILSKLSRNIN
RVLKARRQPQTNELEFKGVIILHVLAASYSTCVSTMTAPENSQFFYQIGI
TGQRYKEIWSALSCTVQRRQRVETCGFGCSNVPLRANALVTELEDELAAI
NRFFFALGPVNNAVCSALNPVSIASHYTRAAEKSLDAWERLVRLIQGVPT
AGPIRAMVDFTFAADRGYSHHEAIDFLNDRLSATILGTHKRSLDYLFVSG
DGPIRKRHEGVPISEKGCRGIYCARRKPKTSSGRPIEAVVYRESYSGRVA
SVYHKNEKLFKGSKFTWVPKTGYKHIEGRDELEKFHKIYHTEEQSGGGTD
GGVLARLKVSQINAGVKQMTLVQSQDPGWFLARAFQFTYRTTNNFIKDVA
GNFKANCGALVDLVHGKYTGYGGVHFSDNSSEVAAHLELRFKAICHVLNG
RLSSVSPRNDFAEAKSFLLSSTATVLES*
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spliced messenger RNA

>Ggra7249.t1 ID=Ggra7249.t1|Name=Ggra7249.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2037bp|location=Sequence derived from alignment at tig00000871_pilon:446661..448938- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCATCCCCACGCAGTTCTCAATCACGGGTTAGGCAAGTAGAAGCATT
TATCCCCAGCCCAGAGAAGCCAACCGATCAAGAAGCTATTGGCATTGTGA
ACAAAAACCCAACATCCGCCGTGGACCTTGATACGGACACACAATTCGAG
GATAATGATTCACAATCTTTGCTGCCAACTAATCTGAATCAATATCTCCA
ACGTAGTCATGACCATTCAATTGACAATAGTGACGACGATCCAACATACC
TCTACTCTCTATCTCAAACTACGGCGACTACAAGTACACTCTCTGCCGAT
GCTCAGCAGGAAGAAGCCGTATCTGACTGTGAGGTTCGAGAGCTGCATCG
AGAAAAAAACAAGTGTGCTGCTAAGCACAGTTTGGATACCGTTACGTCAA
ACAGAATTGAGTCGCAGACTATGGCAGTTGAGGACGTTTGGTCTTCGTTG
TTTAGCAATGAAATGGATTGTACTCTTGAGGACAGTTTGGATTCGTCTGG
TGCTACTATGTCAATTGGGAGTGATATTGATGCAGATAATGAAAGAGAAC
TGGATATTGATGGCATCAACGAAAACTTGGGAAAACACTTTGTGGAAGAA
ACGAATACTGTGCTAAGAAATGTTGTCAAAAATATTCAGGAATCTCCCAC
TGGGGATCGGGCTCTCAACGAATCAAGCCTTCCCAGATTGGCTGCCTTCG
ATGTATTCTTACCTGCATATATTCTTTCAAAGCTCTCCAGAAACATCAAC
CGCGTGTTAAAGGCTCGTCGTCAGCCCCAAACAAATGAGTTAGAGTTCAA
GGGGGTTATTATCCTACATGTACTTGCGGCCTCCTATTCTACGTGTGTTT
CTACAATGACTGCACCAGAGAACTCTCAGTTCTTCTATCAAATAGGAATC
ACTGGACAACGTTATAAGGAAATTTGGTCTGCACTTAGCTGCACAGTACA
ACGGAGGCAAAGGGTTGAAACCTGCGGTTTTGGTTGTTCTAATGTTCCCC
TTAGAGCCAACGCGCTGGTAACGGAGCTCGAAGATGAATTGGCTGCTATC
AATCGTTTTTTTTTTGCCTTAGGCCCTGTCAATAATGCCGTCTGCTCGGC
ACTAAACCCTGTTTCTATAGCCAGTCACTACACTCGAGCTGCTGAAAAAT
CACTGGACGCTTGGGAAAGACTCGTGAGATTGATTCAAGGCGTCCCTACT
GCTGGCCCAATTAGAGCTATGGTGGATTTCACATTTGCAGCGGACCGTGG
ATATAGTCATCATGAAGCTATTGACTTTTTAAATGATAGGCTGAGTGCAA
CTATTCTCGGCACACACAAACGTTCACTTGATTATTTGTTTGTGTCTGGC
GACGGGCCCATTCGCAAGCGCCATGAAGGCGTCCCTATCAGTGAGAAGGG
TTGCCGGGGGATCTATTGTGCACGACGGAAGCCAAAAACCTCTTCAGGTC
GCCCAATTGAGGCCGTCGTTTATCGGGAAAGCTACAGCGGCCGAGTGGCA
TCAGTTTACCACAAGAATGAAAAACTCTTCAAGGGCTCTAAGTTCACCTG
GGTCCCCAAGACGGGATACAAGCACATCGAAGGCCGCGACGAACTTGAGA
AGTTCCACAAAATCTATCACACCGAAGAGCAATCAGGTGGTGGTACAGAT
GGAGGAGTTCTAGCTCGATTGAAGGTATCTCAAATTAATGCGGGAGTTAA
GCAGATGACTCTGGTACAGTCTCAAGATCCTGGGTGGTTCTTGGCCAGAG
CATTCCAGTTTACCTACCGTACAACCAACAATTTTATTAAGGACGTTGCG
GGCAACTTTAAGGCTAATTGTGGGGCCCTTGTTGACTTAGTGCATGGAAA
GTATACTGGATATGGCGGCGTACATTTCTCTGATAACTCTAGTGAAGTTG
CCGCACATTTGGAGCTGCGATTCAAAGCTATTTGTCATGTTCTGAACGGG
CGCTTGTCCTCCGTTTCTCCTCGAAATGATTTTGCCGAGGCCAAATCATT
CCTACTGTCTTCTACAGCAACCGTTTTGGAGTCCTAA
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protein sequence of Ggra7249.t1

>Ggra7249.t1 ID=Ggra7249.t1|Name=Ggra7249.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=679bp
MPSPRSSQSRVRQVEAFIPSPEKPTDQEAIGIVNKNPTSAVDLDTDTQFE
DNDSQSLLPTNLNQYLQRSHDHSIDNSDDDPTYLYSLSQTTATTSTLSAD
AQQEEAVSDCEVRELHREKNKCAAKHSLDTVTSNRIESQTMAVEDVWSSL
FSNEMDCTLEDSLDSSGATMSIGSDIDADNERELDIDGINENLGKHFVEE
TNTVLRNVVKNIQESPTGDRALNESSLPRLAAFDVFLPAYILSKLSRNIN
RVLKARRQPQTNELEFKGVIILHVLAASYSTCVSTMTAPENSQFFYQIGI
TGQRYKEIWSALSCTVQRRQRVETCGFGCSNVPLRANALVTELEDELAAI
NRFFFALGPVNNAVCSALNPVSIASHYTRAAEKSLDAWERLVRLIQGVPT
AGPIRAMVDFTFAADRGYSHHEAIDFLNDRLSATILGTHKRSLDYLFVSG
DGPIRKRHEGVPISEKGCRGIYCARRKPKTSSGRPIEAVVYRESYSGRVA
SVYHKNEKLFKGSKFTWVPKTGYKHIEGRDELEKFHKIYHTEEQSGGGTD
GGVLARLKVSQINAGVKQMTLVQSQDPGWFLARAFQFTYRTTNNFIKDVA
GNFKANCGALVDLVHGKYTGYGGVHFSDNSSEVAAHLELRFKAICHVLNG
RLSSVSPRNDFAEAKSFLLSSTATVLES*
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mRNA from alignment at tig00000871_pilon:446661..448938-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7249.t1 ID=Ggra7249.t1|Name=Ggra7249.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2278bp|location=Sequence derived from alignment at tig00000871_pilon:446661..448938- (Gracilaria gracilis GNS1m male)
ATGCCATCCCCACGCAGTTCTCAATCACGGGTTAGGCAAGTAGAAGCATT
TATCCCCAGCCCAGAGAAGCCAACCGATCAAGAAGCTATTGGCATTGTGA
ACAAAAACCCAACATCCGCCGTGGACCTTGATACGGACACACAATTCGAG
GATAATGATTCACAATCTTTGCTGCCAACTGTTCTTGATTTCAACGATGA
TGAAAATCTTGAGAGTTCCATACCCAATGCACAAAGCCCTACCGAAACGG
CCTAGAATCTGAATCAATATCTCCAACGTAGTCATGACCATTCAATTGAC
AATAGTGACGACGATCCAACATACCTCTACTCTCTATCTCAAACTACGGC
GACTACAAGTACACTCTCTGCCGATGCTCAGCAGGAAGAAGCCGTATCTG
ACTGTGAGGTTCGAGAGCTGCATCGAGAAAAAAACAAGTGTGCTGCTAAG
CACAGTTTGGATACCGTTACGTCAAACAGAATTGAGTCGCAGACTATGGC
AGTTGAGGACGTTTGGTCTTCGTTGTTTAGCAATGAAATGGATTGTACTC
TTGAGGACAGTTTGGATTCGTCTGGTGCTACTATGTCAATTGGGAGTGAT
ATTGATGCAGATAATGAAAGAGGTAAGTTGGGAGTAGGCCTTAGTACGTA
GAAATACAGTTCCCCGTTTGCGCCAATAGAACTGGATATTGATGGCATCA
ACGAAAACTTGGGAAAACACTTTGTGGAAGAAACGAATACTGTGCTAAGA
AATGTTGTCAAAAATATTCAGGAATCTCCCACTGGGGATCGGGCTCTCAA
CGAATCAAGCCTTCCCAGATTGGCTGCCTTCGATGTATTCTTACCTGCAT
ATATTCTTTCAAAGCTCTCCAGAAACATCAACCGCGTGTTAAAGGCTCGT
CGTCAGCCCCAAACAAATGAGTTAGAGTTCAAGGGGGTTATTATCCTACA
TGTACTTGCGGCCTCCTATTCTACGTGTGTTTCTACAATGACTGCACCAG
AGAACTCTCAGTTCTTCTATCAAATAGGAATCACTGGACAACGTTATAAG
GAAATTTGGTCTGCACTTAGCTGCACAGTACAACGGAGGCAAAGGGTTGA
AACCTGCGGTTTTGGTTGTTCTAATGTTCCCCTTAGAGCCAACGCGCTGG
TAACGGAGCTCGAAGATGAATTGGCTGCTATCAATCGTTTTTTTTTTGTT
AGTTCCAGGGCGGACCATCTTTTTTTTGGATGATGACCATCAAAGGTTCA
GGTAGAGAGCGGTTGCGCGGCTGACGCTAATGAGTCATATCAATAATCCT
AGGAAGGCCTTAGGCCCTGTCAATAATGCCGTCTGCTCGGCACTAAACCC
TGTTTCTATAGCCAGTCACTACACTCGAGCTGCTGAAAAATCACTGGACG
CTTGGGAAAGACTCGTGAGATTGATTCAAGGCGTCCCTACTGCTGGCCCA
ATTAGAGCTATGGTGGATTTCACATTTGCAGCGGACCGTGGATATAGTCA
TCATGAAGCTATTGACTTTTTAAATGATAGGCTGAGTGCAACTATTCTCG
GCACACACAAACGTTCACTTGATTATTTGTTTGTGTCTGGCGACGGGCCC
ATTCGCAAGCGCCATGAAGGCGTCCCTATCAGTGAGAAGGGTTGCCGGGG
GATCTATTGTGCACGACGGAAGCCAAAAACCTCTTCAGGTCGCCCAATTG
AGGCCGTCGTTTATCGGGAAAGCTACAGCGGCCGAGTGGCATCAGTTTAC
CACAAGAATGAAAAACTCTTCAAGGGCTCTAAGTTCACCTGGGTCCCCAA
GACGGGATACAAGCACATCGAAGGCCGCGACGAACTTGAGAAGTTCCACA
AAATCTATCACACCGAAGAGCAATCAGGTGGTGGTACAGATGGAGGAGTT
CTAGCTCGATTGAAGGTATCTCAAATTAATGCGGGAGTTAAGCAGATGAC
TCTGGTACAGTCTCAAGATCCTGGGTGGTTCTTGGCCAGAGCATTCCAGT
TTACCTACCGTACAACCAACAATTTTATTAAGGACGTTGCGGGCAACTTT
AAGGCTAATTGTGGGGCCCTTGTTGACTTAGTGCATGGAAAGTATACTGG
ATATGGCGGCGTACATTTCTCTGATAACTCTAGTGAAGTTGCCGCACATT
TGGAGCTGCGATTCAAAGCTATTTGTCATGTTCTGAACGGGCGCTTGTCC
TCCGTTTCTCCTCGAAATGATTTTGCCGAGGCCAAATCATTCCTACTGTC
TTCTACAGCAACCGTTTTGGAGTCCTAA
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Coding sequence (CDS) from alignment at tig00000871_pilon:446661..448938-

>Ggra7249.t1 ID=Ggra7249.t1|Name=Ggra7249.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2037bp|location=Sequence derived from alignment at tig00000871_pilon:446661..448938- (Gracilaria gracilis GNS1m male)
ATGCCATCCCCACGCAGTTCTCAATCACGGGTTAGGCAAGTAGAAGCATT
TATCCCCAGCCCAGAGAAGCCAACCGATCAAGAAGCTATTGGCATTGTGA
ACAAAAACCCAACATCCGCCGTGGACCTTGATACGGACACACAATTCGAG
GATAATGATTCACAATCTTTGCTGCCAACTAATCTGAATCAATATCTCCA
ACGTAGTCATGACCATTCAATTGACAATAGTGACGACGATCCAACATACC
TCTACTCTCTATCTCAAACTACGGCGACTACAAGTACACTCTCTGCCGAT
GCTCAGCAGGAAGAAGCCGTATCTGACTGTGAGGTTCGAGAGCTGCATCG
AGAAAAAAACAAGTGTGCTGCTAAGCACAGTTTGGATACCGTTACGTCAA
ACAGAATTGAGTCGCAGACTATGGCAGTTGAGGACGTTTGGTCTTCGTTG
TTTAGCAATGAAATGGATTGTACTCTTGAGGACAGTTTGGATTCGTCTGG
TGCTACTATGTCAATTGGGAGTGATATTGATGCAGATAATGAAAGAGAAC
TGGATATTGATGGCATCAACGAAAACTTGGGAAAACACTTTGTGGAAGAA
ACGAATACTGTGCTAAGAAATGTTGTCAAAAATATTCAGGAATCTCCCAC
TGGGGATCGGGCTCTCAACGAATCAAGCCTTCCCAGATTGGCTGCCTTCG
ATGTATTCTTACCTGCATATATTCTTTCAAAGCTCTCCAGAAACATCAAC
CGCGTGTTAAAGGCTCGTCGTCAGCCCCAAACAAATGAGTTAGAGTTCAA
GGGGGTTATTATCCTACATGTACTTGCGGCCTCCTATTCTACGTGTGTTT
CTACAATGACTGCACCAGAGAACTCTCAGTTCTTCTATCAAATAGGAATC
ACTGGACAACGTTATAAGGAAATTTGGTCTGCACTTAGCTGCACAGTACA
ACGGAGGCAAAGGGTTGAAACCTGCGGTTTTGGTTGTTCTAATGTTCCCC
TTAGAGCCAACGCGCTGGTAACGGAGCTCGAAGATGAATTGGCTGCTATC
AATCGTTTTTTTTTTGCCTTAGGCCCTGTCAATAATGCCGTCTGCTCGGC
ACTAAACCCTGTTTCTATAGCCAGTCACTACACTCGAGCTGCTGAAAAAT
CACTGGACGCTTGGGAAAGACTCGTGAGATTGATTCAAGGCGTCCCTACT
GCTGGCCCAATTAGAGCTATGGTGGATTTCACATTTGCAGCGGACCGTGG
ATATAGTCATCATGAAGCTATTGACTTTTTAAATGATAGGCTGAGTGCAA
CTATTCTCGGCACACACAAACGTTCACTTGATTATTTGTTTGTGTCTGGC
GACGGGCCCATTCGCAAGCGCCATGAAGGCGTCCCTATCAGTGAGAAGGG
TTGCCGGGGGATCTATTGTGCACGACGGAAGCCAAAAACCTCTTCAGGTC
GCCCAATTGAGGCCGTCGTTTATCGGGAAAGCTACAGCGGCCGAGTGGCA
TCAGTTTACCACAAGAATGAAAAACTCTTCAAGGGCTCTAAGTTCACCTG
GGTCCCCAAGACGGGATACAAGCACATCGAAGGCCGCGACGAACTTGAGA
AGTTCCACAAAATCTATCACACCGAAGAGCAATCAGGTGGTGGTACAGAT
GGAGGAGTTCTAGCTCGATTGAAGGTATCTCAAATTAATGCGGGAGTTAA
GCAGATGACTCTGGTACAGTCTCAAGATCCTGGGTGGTTCTTGGCCAGAG
CATTCCAGTTTACCTACCGTACAACCAACAATTTTATTAAGGACGTTGCG
GGCAACTTTAAGGCTAATTGTGGGGCCCTTGTTGACTTAGTGCATGGAAA
GTATACTGGATATGGCGGCGTACATTTCTCTGATAACTCTAGTGAAGTTG
CCGCACATTTGGAGCTGCGATTCAAAGCTATTTGTCATGTTCTGAACGGG
CGCTTGTCCTCCGTTTCTCCTCGAAATGATTTTGCCGAGGCCAAATCATT
CCTACTGTCTTCTACAGCAACCGTTTTGGAGTCCTAA
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