Ggra7248.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7248.t1
Unique Name	Ggra7248.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	646

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000871_pilon	contig	tig00000871_pilon:429390..431327 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708313.1
Preferred name	DNAJC11
PFAMs	DUF3395,DnaJ
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03575,ko:K09531
KEGG Pathway	ko03410,map03410
GOs	GO:0000003,GO:0001671,GO:0003006,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007275,GO:0008047,GO:0008104,GO:0008150,GO:0009314,GO:0009416,GO:0009536,GO:0009628,GO:0009642,GO:0009791,GO:0009987,GO:0010228,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0017038,GO:0019867,GO:0022414,GO:0030150,GO:0030234,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032501,GO:0032502,GO:0032781,GO:0033036,GO:0033365,GO:0034613,GO:0042407,GO:0042886,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043462,GO:0044093,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045184,GO:0046907,GO:0048608,GO:0048731,GO:0048856,GO:0050790,GO:0050896,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0055085,GO:0055122,GO:0060589,GO:0060590,GO:0061024,GO:0061458,GO:0065002,GO:0065007,GO:0065009,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0098588,GO:0098772,GO:0098805,GO:1990542
Evalue	7.48e-78
EggNOG OGs	COG0484@1\|root,KOG0718@2759\|Eukaryota
Description	response to very low light intensity stimulus
COG category	O
BRITE	ko00000,ko00001,ko01000,ko03110,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7248	Ggra7248	Gracilaria gracilis GNS1m male	gene	tig00000871_pilon 429390..431327 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7248.t1.start1	Ggra7248.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000871_pilon 429390..429392 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7248.t1.CDS1	Ggra7248.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000871_pilon 429390..431327 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7248.t1.exon1	Ggra7248.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000871_pilon 429390..431327 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7248.t1.stop1	Ggra7248.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000871_pilon 431325..431327 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7248.t1	Ggra7248.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000871_pilon 429390..431327 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000871_pilon:429390..431327+
coding sequence from alignment at tig00000871_pilon:429390..431327+

mRNA sequence

>Ggra7248.t1 ID=Ggra7248.t1|Name=Ggra7248.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=646bp
MTDPGEEIQQDLYTILKVSRDANETDLRSSFRRLSQQFHPDKHIGEQAKA
TATDHFTRVKEAYEILSNHKFRRIYNEFGLDAARAAAMPGMELVPYNDLA
ERFRNESMGGNGGPGINTPRDAYFTVTNSVEPRIDATGLSVALEDGDYSN
TKNLAVCTQVGIATVATAYVSQSNTVNVRYAAACQGSRYHSRASGGAGEV
AVSIRRQIDPHMQAEVTAHVPLEESQSITYGLKTFRSLSQNMTGAFDVSY
DPERKDLSTALTYTRSFNERCTASASWAYGAASGYAFSWRRNAYDEYVSD
SSVEKDAETELFGADSSDSEETAGSPWRERITMFLKKLKYFIEPMGLRWT
ARWSVMDASISCLLRRPIGLHAPLFEKCDPTGPGGGFVRARGSLSVMGWE
MELGGGRKYVLSDTAWTVSVAFGTLGVVWRLKMSRGGHRFSLPVVLHSAM
ADPKTATIAAITSSALVSAFQLLIVEPWQREKDQSEREEAKSRRADVLNQ
GRQDAEAALDMMKQTIERIRKEEEEVEIDGMKGSGLIIKKAVYGVTESVS
KMKFTDEDLENREIDAEAADVTDAVQCLVAKSAVQVVSATKSTLPGFWDP
SAYGDKEDIVLKIWYLFKTEKHECVIRDDEPIELPLSSHRVSGWS*

spliced messenger RNA

>Ggra7248.t1 ID=Ggra7248.t1|Name=Ggra7248.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1938bp|location=Sequence derived from alignment at tig00000871_pilon:429390..431327+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGATCCAGGAGAAGAAATTCAACAAGATCTGTATACCATACTCAA
AGTTTCAAGAGACGCTAATGAAACTGATCTGCGTTCTTCATTTCGAAGAT
TGTCGCAGCAGTTCCACCCAGACAAACATATCGGTGAGCAAGCAAAAGCA
ACTGCCACAGACCATTTCACTAGAGTCAAGGAAGCCTATGAGATTCTTTC
GAATCATAAGTTCAGACGCATTTATAATGAGTTTGGTCTGGACGCCGCTC
GAGCGGCTGCAATGCCTGGAATGGAACTCGTTCCTTATAATGATCTTGCG
GAACGTTTCAGAAATGAGTCTATGGGTGGCAATGGAGGCCCTGGAATTAA
CACCCCGAGAGATGCGTATTTCACTGTTACTAACTCGGTAGAACCAAGAA
TAGATGCCACCGGACTTTCTGTCGCATTGGAAGACGGAGATTATAGCAAC
ACAAAGAACCTGGCTGTGTGTACTCAAGTCGGAATAGCGACGGTTGCTAC
CGCATATGTGTCACAGAGCAATACTGTTAATGTCCGATATGCAGCCGCCT
GTCAAGGCTCTCGATACCACAGTCGTGCTTCCGGTGGAGCTGGCGAGGTA
GCAGTGTCAATCAGACGACAGATTGATCCTCACATGCAGGCAGAAGTCAC
AGCTCACGTTCCACTGGAAGAGAGTCAGTCCATAACGTACGGTCTTAAAA
CCTTCCGCTCTCTCTCTCAGAACATGACAGGTGCGTTTGACGTGTCTTAT
GACCCAGAGCGAAAGGACCTCTCTACCGCGCTTACGTACACCAGGTCGTT
CAATGAAAGATGCACTGCAAGCGCTTCTTGGGCATACGGCGCGGCCTCTG
GCTATGCGTTTTCATGGCGCAGGAATGCATACGACGAATATGTTTCTGAT
TCATCCGTAGAAAAAGATGCCGAGACCGAGTTATTTGGGGCTGACAGTTC
TGACTCCGAAGAAACTGCGGGAAGCCCCTGGCGCGAAAGGATAACTATGT
TCTTAAAGAAGCTAAAATACTTTATCGAGCCGATGGGACTACGTTGGACA
GCGAGATGGAGCGTGATGGACGCATCCATATCTTGCCTCCTAAGGAGACC
TATTGGTTTACACGCTCCTTTATTCGAGAAATGTGATCCCACAGGCCCAG
GAGGCGGATTCGTCCGAGCTCGCGGTTCGCTTAGCGTAATGGGTTGGGAG
ATGGAGCTGGGTGGCGGGCGAAAATATGTTCTCTCGGATACAGCGTGGAC
AGTGTCTGTGGCATTTGGAACTCTAGGGGTGGTCTGGAGACTCAAGATGA
GCAGAGGCGGACACCGATTCAGTTTGCCGGTGGTACTTCATTCAGCAATG
GCGGATCCAAAGACGGCCACAATCGCGGCGATTACATCTTCAGCTCTCGT
TAGTGCTTTTCAACTCTTAATCGTGGAACCATGGCAGCGAGAAAAGGACC
AGAGTGAAAGAGAAGAGGCTAAATCGCGCCGAGCTGATGTTCTGAATCAA
GGGCGCCAGGATGCGGAGGCGGCTCTGGATATGATGAAGCAAACAATCGA
ACGGATTagaaaagaagaagaagaagTCGAAATTGATGGGATGAAAGGTT
CGGGACTAATCATAAAGAAGGCCGTCTATGGCGTCACTGAAAGTGTATCG
AAAATGAAGTTCACAGATGAAGATCTCGAGAACAGGGAAATTGACGCCGA
AGCAGCAGATGTGACTGATGCTGTTCAATGTCTTGTTGCGAAGAGTGCCG
TGCAGGTTGTTTCAGCTACAAAATCCACCCTTCCTGGCTTTTGGGATCCA
AGCGCGTACGGCGATAAAGAAGACATTGTGCTGAAGATATGGTACTTATT
CAAGACAGAAAAACATGAATGTGTCATCCGAGATGATGAACCAATCGAAC
TACCGCTTTCTTCACACCGAGTGAGTGGATGGTCTTGA

protein sequence of Ggra7248.t1

>Ggra7248.t1 ID=Ggra7248.t1|Name=Ggra7248.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=646bp
MTDPGEEIQQDLYTILKVSRDANETDLRSSFRRLSQQFHPDKHIGEQAKA
TATDHFTRVKEAYEILSNHKFRRIYNEFGLDAARAAAMPGMELVPYNDLA
ERFRNESMGGNGGPGINTPRDAYFTVTNSVEPRIDATGLSVALEDGDYSN
TKNLAVCTQVGIATVATAYVSQSNTVNVRYAAACQGSRYHSRASGGAGEV
AVSIRRQIDPHMQAEVTAHVPLEESQSITYGLKTFRSLSQNMTGAFDVSY
DPERKDLSTALTYTRSFNERCTASASWAYGAASGYAFSWRRNAYDEYVSD
SSVEKDAETELFGADSSDSEETAGSPWRERITMFLKKLKYFIEPMGLRWT
ARWSVMDASISCLLRRPIGLHAPLFEKCDPTGPGGGFVRARGSLSVMGWE
MELGGGRKYVLSDTAWTVSVAFGTLGVVWRLKMSRGGHRFSLPVVLHSAM
ADPKTATIAAITSSALVSAFQLLIVEPWQREKDQSEREEAKSRRADVLNQ
GRQDAEAALDMMKQTIERIRKEEEEVEIDGMKGSGLIIKKAVYGVTESVS
KMKFTDEDLENREIDAEAADVTDAVQCLVAKSAVQVVSATKSTLPGFWDP
SAYGDKEDIVLKIWYLFKTEKHECVIRDDEPIELPLSSHRVSGWS*

mRNA from alignment at tig00000871_pilon:429390..431327+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7248.t1 ID=Ggra7248.t1|Name=Ggra7248.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1938bp|location=Sequence derived from alignment at tig00000871_pilon:429390..431327+ (Gracilaria gracilis GNS1m male)
ATGACCGATCCAGGAGAAGAAATTCAACAAGATCTGTATACCATACTCAA
AGTTTCAAGAGACGCTAATGAAACTGATCTGCGTTCTTCATTTCGAAGAT
TGTCGCAGCAGTTCCACCCAGACAAACATATCGGTGAGCAAGCAAAAGCA
ACTGCCACAGACCATTTCACTAGAGTCAAGGAAGCCTATGAGATTCTTTC
GAATCATAAGTTCAGACGCATTTATAATGAGTTTGGTCTGGACGCCGCTC
GAGCGGCTGCAATGCCTGGAATGGAACTCGTTCCTTATAATGATCTTGCG
GAACGTTTCAGAAATGAGTCTATGGGTGGCAATGGAGGCCCTGGAATTAA
CACCCCGAGAGATGCGTATTTCACTGTTACTAACTCGGTAGAACCAAGAA
TAGATGCCACCGGACTTTCTGTCGCATTGGAAGACGGAGATTATAGCAAC
ACAAAGAACCTGGCTGTGTGTACTCAAGTCGGAATAGCGACGGTTGCTAC
CGCATATGTGTCACAGAGCAATACTGTTAATGTCCGATATGCAGCCGCCT
GTCAAGGCTCTCGATACCACAGTCGTGCTTCCGGTGGAGCTGGCGAGGTA
GCAGTGTCAATCAGACGACAGATTGATCCTCACATGCAGGCAGAAGTCAC
AGCTCACGTTCCACTGGAAGAGAGTCAGTCCATAACGTACGGTCTTAAAA
CCTTCCGCTCTCTCTCTCAGAACATGACAGGTGCGTTTGACGTGTCTTAT
GACCCAGAGCGAAAGGACCTCTCTACCGCGCTTACGTACACCAGGTCGTT
CAATGAAAGATGCACTGCAAGCGCTTCTTGGGCATACGGCGCGGCCTCTG
GCTATGCGTTTTCATGGCGCAGGAATGCATACGACGAATATGTTTCTGAT
TCATCCGTAGAAAAAGATGCCGAGACCGAGTTATTTGGGGCTGACAGTTC
TGACTCCGAAGAAACTGCGGGAAGCCCCTGGCGCGAAAGGATAACTATGT
TCTTAAAGAAGCTAAAATACTTTATCGAGCCGATGGGACTACGTTGGACA
GCGAGATGGAGCGTGATGGACGCATCCATATCTTGCCTCCTAAGGAGACC
TATTGGTTTACACGCTCCTTTATTCGAGAAATGTGATCCCACAGGCCCAG
GAGGCGGATTCGTCCGAGCTCGCGGTTCGCTTAGCGTAATGGGTTGGGAG
ATGGAGCTGGGTGGCGGGCGAAAATATGTTCTCTCGGATACAGCGTGGAC
AGTGTCTGTGGCATTTGGAACTCTAGGGGTGGTCTGGAGACTCAAGATGA
GCAGAGGCGGACACCGATTCAGTTTGCCGGTGGTACTTCATTCAGCAATG
GCGGATCCAAAGACGGCCACAATCGCGGCGATTACATCTTCAGCTCTCGT
TAGTGCTTTTCAACTCTTAATCGTGGAACCATGGCAGCGAGAAAAGGACC
AGAGTGAAAGAGAAGAGGCTAAATCGCGCCGAGCTGATGTTCTGAATCAA
GGGCGCCAGGATGCGGAGGCGGCTCTGGATATGATGAAGCAAACAATCGA
ACGGATTagaaaagaagaagaagaagTCGAAATTGATGGGATGAAAGGTT
CGGGACTAATCATAAAGAAGGCCGTCTATGGCGTCACTGAAAGTGTATCG
AAAATGAAGTTCACAGATGAAGATCTCGAGAACAGGGAAATTGACGCCGA
AGCAGCAGATGTGACTGATGCTGTTCAATGTCTTGTTGCGAAGAGTGCCG
TGCAGGTTGTTTCAGCTACAAAATCCACCCTTCCTGGCTTTTGGGATCCA
AGCGCGTACGGCGATAAAGAAGACATTGTGCTGAAGATATGGTACTTATT
CAAGACAGAAAAACATGAATGTGTCATCCGAGATGATGAACCAATCGAAC
TACCGCTTTCTTCACACCGAGTGAGTGGATGGTCTTGA

Coding sequence (CDS) from alignment at tig00000871_pilon:429390..431327+

>Ggra7248.t1 ID=Ggra7248.t1|Name=Ggra7248.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1938bp|location=Sequence derived from alignment at tig00000871_pilon:429390..431327+ (Gracilaria gracilis GNS1m male)
ATGACCGATCCAGGAGAAGAAATTCAACAAGATCTGTATACCATACTCAA
AGTTTCAAGAGACGCTAATGAAACTGATCTGCGTTCTTCATTTCGAAGAT
TGTCGCAGCAGTTCCACCCAGACAAACATATCGGTGAGCAAGCAAAAGCA
ACTGCCACAGACCATTTCACTAGAGTCAAGGAAGCCTATGAGATTCTTTC
GAATCATAAGTTCAGACGCATTTATAATGAGTTTGGTCTGGACGCCGCTC
GAGCGGCTGCAATGCCTGGAATGGAACTCGTTCCTTATAATGATCTTGCG
GAACGTTTCAGAAATGAGTCTATGGGTGGCAATGGAGGCCCTGGAATTAA
CACCCCGAGAGATGCGTATTTCACTGTTACTAACTCGGTAGAACCAAGAA
TAGATGCCACCGGACTTTCTGTCGCATTGGAAGACGGAGATTATAGCAAC
ACAAAGAACCTGGCTGTGTGTACTCAAGTCGGAATAGCGACGGTTGCTAC
CGCATATGTGTCACAGAGCAATACTGTTAATGTCCGATATGCAGCCGCCT
GTCAAGGCTCTCGATACCACAGTCGTGCTTCCGGTGGAGCTGGCGAGGTA
GCAGTGTCAATCAGACGACAGATTGATCCTCACATGCAGGCAGAAGTCAC
AGCTCACGTTCCACTGGAAGAGAGTCAGTCCATAACGTACGGTCTTAAAA
CCTTCCGCTCTCTCTCTCAGAACATGACAGGTGCGTTTGACGTGTCTTAT
GACCCAGAGCGAAAGGACCTCTCTACCGCGCTTACGTACACCAGGTCGTT
CAATGAAAGATGCACTGCAAGCGCTTCTTGGGCATACGGCGCGGCCTCTG
GCTATGCGTTTTCATGGCGCAGGAATGCATACGACGAATATGTTTCTGAT
TCATCCGTAGAAAAAGATGCCGAGACCGAGTTATTTGGGGCTGACAGTTC
TGACTCCGAAGAAACTGCGGGAAGCCCCTGGCGCGAAAGGATAACTATGT
TCTTAAAGAAGCTAAAATACTTTATCGAGCCGATGGGACTACGTTGGACA
GCGAGATGGAGCGTGATGGACGCATCCATATCTTGCCTCCTAAGGAGACC
TATTGGTTTACACGCTCCTTTATTCGAGAAATGTGATCCCACAGGCCCAG
GAGGCGGATTCGTCCGAGCTCGCGGTTCGCTTAGCGTAATGGGTTGGGAG
ATGGAGCTGGGTGGCGGGCGAAAATATGTTCTCTCGGATACAGCGTGGAC
AGTGTCTGTGGCATTTGGAACTCTAGGGGTGGTCTGGAGACTCAAGATGA
GCAGAGGCGGACACCGATTCAGTTTGCCGGTGGTACTTCATTCAGCAATG
GCGGATCCAAAGACGGCCACAATCGCGGCGATTACATCTTCAGCTCTCGT
TAGTGCTTTTCAACTCTTAATCGTGGAACCATGGCAGCGAGAAAAGGACC
AGAGTGAAAGAGAAGAGGCTAAATCGCGCCGAGCTGATGTTCTGAATCAA
GGGCGCCAGGATGCGGAGGCGGCTCTGGATATGATGAAGCAAACAATCGA
ACGGATTagaaaagaagaagaagaagTCGAAATTGATGGGATGAAAGGTT
CGGGACTAATCATAAAGAAGGCCGTCTATGGCGTCACTGAAAGTGTATCG
AAAATGAAGTTCACAGATGAAGATCTCGAGAACAGGGAAATTGACGCCGA
AGCAGCAGATGTGACTGATGCTGTTCAATGTCTTGTTGCGAAGAGTGCCG
TGCAGGTTGTTTCAGCTACAAAATCCACCCTTCCTGGCTTTTGGGATCCA
AGCGCGTACGGCGATAAAGAAGACATTGTGCTGAAGATATGGTACTTATT
CAAGACAGAAAAACATGAATGTGTCATCCGAGATGATGAACCAATCGAAC
TACCGCTTTCTTCACACCGAGTGAGTGGATGGTCTTGA