Ggra7242.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7242.t1
Unique Name	Ggra7242.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	589

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000871_pilon	contig	tig00000871_pilon:375964..377730 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	67593.Physo128229
PFAMs	EF-hand_7,Na_Ca_ex
Max annot lvl	4776\|Peronosporales
Evalue	3.03e-130
EggNOG OGs	28NP9@1\|root,2QV8Y@2759\|Eukaryota,3QEIZ@4776\|Peronosporales
Description	Sodium/calcium exchanger protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7242	Ggra7242	Gracilaria gracilis GNS1m male	gene	tig00000871_pilon 375964..377730 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7242.t1.stop1	Ggra7242.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000871_pilon 375964..375966 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7242.t1.CDS1	Ggra7242.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000871_pilon 375964..377730 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7242.t1.exon1	Ggra7242.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000871_pilon 375964..377730 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7242.t1.start1	Ggra7242.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000871_pilon 377728..377730 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7242.t1	Ggra7242.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000871_pilon 375964..377730 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000871_pilon:375964..377730-
coding sequence from alignment at tig00000871_pilon:375964..377730-

mRNA sequence

>Ggra7242.t1 ID=Ggra7242.t1|Name=Ggra7242.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=589bp
MESLFIEPSSLPGGELWYKACGITSRVAENVTATVSPAISEAVHCDVSPA
SGFVQVLMLLSVYGFVLFNASKLIADGSELLLMVPSLKGIVGSVVLPILG
AVPDGAIVLFSGLGENAQEELSVGVGALAGSTSMLLTIPWFLSILAGRVN
IRPDGVPHYFGRPKLNPSNNMHLDRTGIETRAMVQTAGRTMLITAVSYIV
IQAAALSTGVFFKRDEVGHAVSDAAARERIPAFFCLVICLSFFVWYLHSQ
FTSSPERDSFLEARSDEVTKKLISKGELTLTDAFKGFWDTAASHVDESSP
LHEDSRLSRVLKSFFHGYDQNDSSSIDKLELQYLMNDLGEPCSPEEITQM
YEAMDYNDDGHIQLKEFLDYMPGFLAGRAKKRLDAAADAAANAPPAANEA
AKENGETLDEEEHEEVPQDLYHKDPAQRSINIMKRAFSRMAIGTLLVLIF
SDPMVGVMSEVGRRVGIPPFYISFVLAPLASNASELIAAYSYAAKKTRKT
ITISLSTLLGAAIMNNTFVLAIFMILITMKQLAWQFTAETISILVVEIVL
FFISQKRVMTLRDGWIALSMFPVSLILVAFLENVVGLD*

spliced messenger RNA

>Ggra7242.t1 ID=Ggra7242.t1|Name=Ggra7242.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1767bp|location=Sequence derived from alignment at tig00000871_pilon:375964..377730- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTCCTTATTCATCGAACCGTCCTCTCTTCCAGGAGGTGAACTGTG
GTACAAAGCTTGTGGCATAACTAGCAGGGTTGCCGAAAATGTAACTGCAA
CAGTGTCTCCGGCCATTTCTGAAGCCGTTCATTGCGATGTATCACCCGCA
AGTGGTTTTGTTCAAGTTCTTATGCTTCTTTCTGTTTATGGATTTGTTCT
ATTCAATGCCTCCAAGTTAATTGCGGACGGTAGCGAGTTGCTATTGATGG
TGCCGTCGCTCAAAGGAATTGTCGGTTCAGTTGTCCTTCCAATTTTAGGC
GCTGTGCCAGATGGTGCTATCGTACTGTTTTCAGGATTGGGAGAAAATGC
ACAGGAAGAGCTTTCCGTCGGGGTTGGAGCTCTTGCCGGCTCCACAAGCA
TGCTGCTCACAATTCCGTGGTTCCTATCGATTCTTGCTGGTCGTGTGAAC
ATACGACCTGACGGCGTTCCACATTATTTTGGTCGACCGAAGCTCAACCC
GTCAAACAATATGCATCTAGATCGAACTGGGATTGAGACTAGAGCGATGG
TTCAGACAGCAGGGCGTACCATGCTGATTACGGCCGTGTCGTACATTGTC
ATTCAAGCGGCAGCATTGAGCACAGGAGTGTTCTTTAAAAGGGATGAGGT
GGGACACGCTGTAAGTGATGCCGCTGCTAGGGAGCGTATCCCCGCTTTTT
TCTGCCTTGTCATATGCTTAAGCTTTTTTGTCTGGTATTTGCACTCTCAA
TTTACGTCTTCACCGGAGCGAGACAGCTTTCTTGAGGCCCGCAGTGACGA
AGTAACGAAGAAGCTCATCAGCAAAGGTGAACTCACTCTTACAGACGCAT
TCAAGGGTTTCTGGGACACCGCTGCGAGCCATGTGGACGAATCCAGCCCT
CTGCATGAAGATAGCAGATTGAGTAGGGTTCTAAAGTCCTTCTTCCATGG
ATACGATCAGAACGACAGCAGTTCAATAGACAAGCTGGAACTTCAGTATC
TTATGAACGATCTGGGTGAGCCCTGTTCTCCGGAAGAAATCACCCAAATG
TATGAAGCAATGGATTATAATGATGATGGTCACATTCAGTTAAAGGAGTT
TCTGGACTACATGCCAGGTTTCCTGGCCGGAAGAGCAAAGAAAAGACTCG
ATGCAGCTGCCGATGCAGCGGCCAATGCACCACCTGCCGCTAATGAGGCA
GCTAAGGAGAACGGAGAAACATTAGACGAAGAAGAACATGAAGAAGTGCC
ACAAGATTTATACCACAAAGACCCTGCACAAAGAAGCATCAACATTATGA
AGAGAGCTTTTTCAAGGATGGCGATAGGCACTCTTCTCGTCTTGATCTTT
TCGGATCCTATGGTCGGTGTAATGAGTGAGGTTGGACGAAGGGTTGGCAT
CCCACCGTTCTACATTTCATTCGTTCTAGCACCGCTGGCAAGTAATGCAT
CAGAGCTAATCGCTGCATACAGTTACGCTGCGAAGAAGACTCGCAAGACG
ATTACAATCTCCCTGTCAACACTATTGGGAGCAGCAATTATGAATAACAC
CTTTGTGTTGGCCATTTTTATGATCCTAATCACAATGAAGCAACTTGCAT
GGCAGTTCACAGCAGAAACAATTTCAATTCTCGTCGTCGAAATCGTACTC
TTCTTTATCAGCCAAAAACGTGTGATGACTTTGCGGGACGGGTGGATTGC
ACTATCCATGTTTCCAGTTTCGTTGATACTTGTTGCGTTCTTGGAAAACG
TTGTTGGTTTGGACTGA

protein sequence of Ggra7242.t1

>Ggra7242.t1 ID=Ggra7242.t1|Name=Ggra7242.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=589bp
MESLFIEPSSLPGGELWYKACGITSRVAENVTATVSPAISEAVHCDVSPA
SGFVQVLMLLSVYGFVLFNASKLIADGSELLLMVPSLKGIVGSVVLPILG
AVPDGAIVLFSGLGENAQEELSVGVGALAGSTSMLLTIPWFLSILAGRVN
IRPDGVPHYFGRPKLNPSNNMHLDRTGIETRAMVQTAGRTMLITAVSYIV
IQAAALSTGVFFKRDEVGHAVSDAAARERIPAFFCLVICLSFFVWYLHSQ
FTSSPERDSFLEARSDEVTKKLISKGELTLTDAFKGFWDTAASHVDESSP
LHEDSRLSRVLKSFFHGYDQNDSSSIDKLELQYLMNDLGEPCSPEEITQM
YEAMDYNDDGHIQLKEFLDYMPGFLAGRAKKRLDAAADAAANAPPAANEA
AKENGETLDEEEHEEVPQDLYHKDPAQRSINIMKRAFSRMAIGTLLVLIF
SDPMVGVMSEVGRRVGIPPFYISFVLAPLASNASELIAAYSYAAKKTRKT
ITISLSTLLGAAIMNNTFVLAIFMILITMKQLAWQFTAETISILVVEIVL
FFISQKRVMTLRDGWIALSMFPVSLILVAFLENVVGLD*

mRNA from alignment at tig00000871_pilon:375964..377730-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7242.t1 ID=Ggra7242.t1|Name=Ggra7242.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1767bp|location=Sequence derived from alignment at tig00000871_pilon:375964..377730- (Gracilaria gracilis GNS1m male)
ATGGAGTCCTTATTCATCGAACCGTCCTCTCTTCCAGGAGGTGAACTGTG
GTACAAAGCTTGTGGCATAACTAGCAGGGTTGCCGAAAATGTAACTGCAA
CAGTGTCTCCGGCCATTTCTGAAGCCGTTCATTGCGATGTATCACCCGCA
AGTGGTTTTGTTCAAGTTCTTATGCTTCTTTCTGTTTATGGATTTGTTCT
ATTCAATGCCTCCAAGTTAATTGCGGACGGTAGCGAGTTGCTATTGATGG
TGCCGTCGCTCAAAGGAATTGTCGGTTCAGTTGTCCTTCCAATTTTAGGC
GCTGTGCCAGATGGTGCTATCGTACTGTTTTCAGGATTGGGAGAAAATGC
ACAGGAAGAGCTTTCCGTCGGGGTTGGAGCTCTTGCCGGCTCCACAAGCA
TGCTGCTCACAATTCCGTGGTTCCTATCGATTCTTGCTGGTCGTGTGAAC
ATACGACCTGACGGCGTTCCACATTATTTTGGTCGACCGAAGCTCAACCC
GTCAAACAATATGCATCTAGATCGAACTGGGATTGAGACTAGAGCGATGG
TTCAGACAGCAGGGCGTACCATGCTGATTACGGCCGTGTCGTACATTGTC
ATTCAAGCGGCAGCATTGAGCACAGGAGTGTTCTTTAAAAGGGATGAGGT
GGGACACGCTGTAAGTGATGCCGCTGCTAGGGAGCGTATCCCCGCTTTTT
TCTGCCTTGTCATATGCTTAAGCTTTTTTGTCTGGTATTTGCACTCTCAA
TTTACGTCTTCACCGGAGCGAGACAGCTTTCTTGAGGCCCGCAGTGACGA
AGTAACGAAGAAGCTCATCAGCAAAGGTGAACTCACTCTTACAGACGCAT
TCAAGGGTTTCTGGGACACCGCTGCGAGCCATGTGGACGAATCCAGCCCT
CTGCATGAAGATAGCAGATTGAGTAGGGTTCTAAAGTCCTTCTTCCATGG
ATACGATCAGAACGACAGCAGTTCAATAGACAAGCTGGAACTTCAGTATC
TTATGAACGATCTGGGTGAGCCCTGTTCTCCGGAAGAAATCACCCAAATG
TATGAAGCAATGGATTATAATGATGATGGTCACATTCAGTTAAAGGAGTT
TCTGGACTACATGCCAGGTTTCCTGGCCGGAAGAGCAAAGAAAAGACTCG
ATGCAGCTGCCGATGCAGCGGCCAATGCACCACCTGCCGCTAATGAGGCA
GCTAAGGAGAACGGAGAAACATTAGACGAAGAAGAACATGAAGAAGTGCC
ACAAGATTTATACCACAAAGACCCTGCACAAAGAAGCATCAACATTATGA
AGAGAGCTTTTTCAAGGATGGCGATAGGCACTCTTCTCGTCTTGATCTTT
TCGGATCCTATGGTCGGTGTAATGAGTGAGGTTGGACGAAGGGTTGGCAT
CCCACCGTTCTACATTTCATTCGTTCTAGCACCGCTGGCAAGTAATGCAT
CAGAGCTAATCGCTGCATACAGTTACGCTGCGAAGAAGACTCGCAAGACG
ATTACAATCTCCCTGTCAACACTATTGGGAGCAGCAATTATGAATAACAC
CTTTGTGTTGGCCATTTTTATGATCCTAATCACAATGAAGCAACTTGCAT
GGCAGTTCACAGCAGAAACAATTTCAATTCTCGTCGTCGAAATCGTACTC
TTCTTTATCAGCCAAAAACGTGTGATGACTTTGCGGGACGGGTGGATTGC
ACTATCCATGTTTCCAGTTTCGTTGATACTTGTTGCGTTCTTGGAAAACG
TTGTTGGTTTGGACTGA

Coding sequence (CDS) from alignment at tig00000871_pilon:375964..377730-

>Ggra7242.t1 ID=Ggra7242.t1|Name=Ggra7242.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1767bp|location=Sequence derived from alignment at tig00000871_pilon:375964..377730- (Gracilaria gracilis GNS1m male)
ATGGAGTCCTTATTCATCGAACCGTCCTCTCTTCCAGGAGGTGAACTGTG
GTACAAAGCTTGTGGCATAACTAGCAGGGTTGCCGAAAATGTAACTGCAA
CAGTGTCTCCGGCCATTTCTGAAGCCGTTCATTGCGATGTATCACCCGCA
AGTGGTTTTGTTCAAGTTCTTATGCTTCTTTCTGTTTATGGATTTGTTCT
ATTCAATGCCTCCAAGTTAATTGCGGACGGTAGCGAGTTGCTATTGATGG
TGCCGTCGCTCAAAGGAATTGTCGGTTCAGTTGTCCTTCCAATTTTAGGC
GCTGTGCCAGATGGTGCTATCGTACTGTTTTCAGGATTGGGAGAAAATGC
ACAGGAAGAGCTTTCCGTCGGGGTTGGAGCTCTTGCCGGCTCCACAAGCA
TGCTGCTCACAATTCCGTGGTTCCTATCGATTCTTGCTGGTCGTGTGAAC
ATACGACCTGACGGCGTTCCACATTATTTTGGTCGACCGAAGCTCAACCC
GTCAAACAATATGCATCTAGATCGAACTGGGATTGAGACTAGAGCGATGG
TTCAGACAGCAGGGCGTACCATGCTGATTACGGCCGTGTCGTACATTGTC
ATTCAAGCGGCAGCATTGAGCACAGGAGTGTTCTTTAAAAGGGATGAGGT
GGGACACGCTGTAAGTGATGCCGCTGCTAGGGAGCGTATCCCCGCTTTTT
TCTGCCTTGTCATATGCTTAAGCTTTTTTGTCTGGTATTTGCACTCTCAA
TTTACGTCTTCACCGGAGCGAGACAGCTTTCTTGAGGCCCGCAGTGACGA
AGTAACGAAGAAGCTCATCAGCAAAGGTGAACTCACTCTTACAGACGCAT
TCAAGGGTTTCTGGGACACCGCTGCGAGCCATGTGGACGAATCCAGCCCT
CTGCATGAAGATAGCAGATTGAGTAGGGTTCTAAAGTCCTTCTTCCATGG
ATACGATCAGAACGACAGCAGTTCAATAGACAAGCTGGAACTTCAGTATC
TTATGAACGATCTGGGTGAGCCCTGTTCTCCGGAAGAAATCACCCAAATG
TATGAAGCAATGGATTATAATGATGATGGTCACATTCAGTTAAAGGAGTT
TCTGGACTACATGCCAGGTTTCCTGGCCGGAAGAGCAAAGAAAAGACTCG
ATGCAGCTGCCGATGCAGCGGCCAATGCACCACCTGCCGCTAATGAGGCA
GCTAAGGAGAACGGAGAAACATTAGACGAAGAAGAACATGAAGAAGTGCC
ACAAGATTTATACCACAAAGACCCTGCACAAAGAAGCATCAACATTATGA
AGAGAGCTTTTTCAAGGATGGCGATAGGCACTCTTCTCGTCTTGATCTTT
TCGGATCCTATGGTCGGTGTAATGAGTGAGGTTGGACGAAGGGTTGGCAT
CCCACCGTTCTACATTTCATTCGTTCTAGCACCGCTGGCAAGTAATGCAT
CAGAGCTAATCGCTGCATACAGTTACGCTGCGAAGAAGACTCGCAAGACG
ATTACAATCTCCCTGTCAACACTATTGGGAGCAGCAATTATGAATAACAC
CTTTGTGTTGGCCATTTTTATGATCCTAATCACAATGAAGCAACTTGCAT
GGCAGTTCACAGCAGAAACAATTTCAATTCTCGTCGTCGAAATCGTACTC
TTCTTTATCAGCCAAAAACGTGTGATGACTTTGCGGGACGGGTGGATTGC
ACTATCCATGTTTCCAGTTTCGTTGATACTTGTTGCGTTCTTGGAAAACG
TTGTTGGTTTGGACTGA