Ggra7233.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7233.t1
Unique NameGgra7233.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length294
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:345511..346609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ06864
PFAMsExo_endo_phos,zf-GRF
Max annot lvl35493|Streptophyta
KEGG koko:K10772
KEGG Pathwayko03410,map03410
KEGG ModuleM00296
GOsGO:0001650,GO:0003674,GO:0003824,GO:0003906,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008296,GO:0008309,GO:0008311,GO:0008408,GO:0009987,GO:0016020,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360
Evalue5.48e-46
EggNOG OGsCOG0708@1|root,KOG1294@2759|Eukaryota,37R7N@33090|Viridiplantae,3GG7Y@35493|Streptophyta
EC4.2.99.18
DescriptionDNA-(Apurinic or apyrimidinic site) lyase
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7233Ggra7233Gracilaria gracilis GNS1m malegenetig00000871_pilon 345511..346609 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7233.t1Ggra7233.t1Gracilaria gracilis GNS1m malepolypeptidetig00000871_pilon 345511..346609 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7233.t1.stop1Ggra7233.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000871_pilon 345511..345513 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7233.t1.CDS1Ggra7233.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000871_pilon 345511..345591 -
Ggra7233.t1.CDS2Ggra7233.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000871_pilon 345809..346609 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7233.t1.exon1Ggra7233.t1.exon1Gracilaria gracilis GNS1m maleexontig00000871_pilon 345511..345591 -
Ggra7233.t1.exon2Ggra7233.t1.exon2Gracilaria gracilis GNS1m maleexontig00000871_pilon 345809..346609 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7233.t1.intron1Ggra7233.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000871_pilon 345592..345808 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7233.t1.start1Ggra7233.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000871_pilon 346607..346609 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7233.t1 ID=Ggra7233.t1|Name=Ggra7233.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=294bp
MRITSWNVNGLKSIRPLAPLFETLDSDIICLQETKISGQGDPELESVAFV
EGYDSFFSICKQKRGYSGVATFCRKGVATPSDAGEGFCNNIGGAAIEMRH
SGSASCSKTDHAPVDEERTTPVFNSETLEIVKSEGRCVITDHGGFVLINI
YAPAVTVTERVVFKIQFLHALQAKVEALRRIGRNVLVVGDFNICPSLRDR
AEPVLPSETKEWNQSPTRSWLRTLLETNNMVDSFRELNPNTNSAYTCWSE
ATKSRENNHGVRIDLIVAQLLPCHPFSQLARFVSFPKRLQHRW*
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spliced messenger RNA

>Ggra7233.t1 ID=Ggra7233.t1|Name=Ggra7233.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00000871_pilon:345511..346609- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAATAACTTCTTGGAACGTTAACGGTCTAAAGAGCATTCGTCCTCT
GGCGCCACTCTTCGAAACTCTTGATTCGGACATAATCTGCTTGCAGGAAA
CAAAGATTTCAGGTCAAGGGGATCCAGAGCTCGAGAGCGTGGCGTTTGTA
GAAGGTTATGACTCGTTTTTCAGTATCTGTAAACAGAAGCGAGGATATAG
TGGAGTAGCAACATTCTGTCGAAAGGGGGTTGCAACACCTTCTGATGCCG
GTGAAGGGTTTTGTAACAATATAGGTGGCGCAGCTATTGAGATGCGACAT
TCAGGAAGTGCTTCCTGCTCAAAAACAGACCATGCTCCTGTCGATGAAGA
AAGAACGACACCAGTTTTCAACTCCGAAACCCTAGAGATTGTGAAGAGCG
AAGGTCGTTGCGTCATCACGGACCATGGGGGCTTCGTTCTCATCAATATT
TATGCCCCAGCTGTCACAGTGACAGAGCGTGTCGTCTTTAAGATACAATT
CCTACATGCCTTACAAGCAAAGGTGGAAGCTTTACGAAGGATTGGGCGAA
ATGTACTTGTCGTGGGTGACTTCAACATCTGTCCTTCCCTCAGAGATCGA
GCAGAGCCAGTACTTCCCAGTGAAACTAAAGAATGGAATCAAAGTCCAAC
TAGATCGTGGTTAAGAACTTTGTTAGAAACAAACAACATGGTTGACTCTT
TTCGAGAACTGAATCCCAATACAAACTCTGCCTACACTTGTTGGTCGGAA
GCCACAAAGAGCAGAGAGAACAACCATGGGGTGCGAATAGACCTTATCGT
AGCTCAGCTTCTGCCGTGCCATCCATTTTCTCAGCTGGCAAGATTCGTAA
GCTTTCCAAAGCGCCTGCAGCACCGTTGGTAG
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protein sequence of Ggra7233.t1

>Ggra7233.t1 ID=Ggra7233.t1|Name=Ggra7233.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=294bp
MRITSWNVNGLKSIRPLAPLFETLDSDIICLQETKISGQGDPELESVAFV
EGYDSFFSICKQKRGYSGVATFCRKGVATPSDAGEGFCNNIGGAAIEMRH
SGSASCSKTDHAPVDEERTTPVFNSETLEIVKSEGRCVITDHGGFVLINI
YAPAVTVTERVVFKIQFLHALQAKVEALRRIGRNVLVVGDFNICPSLRDR
AEPVLPSETKEWNQSPTRSWLRTLLETNNMVDSFRELNPNTNSAYTCWSE
ATKSRENNHGVRIDLIVAQLLPCHPFSQLARFVSFPKRLQHRW*
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mRNA from alignment at tig00000871_pilon:345511..346609-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7233.t1 ID=Ggra7233.t1|Name=Ggra7233.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1099bp|location=Sequence derived from alignment at tig00000871_pilon:345511..346609- (Gracilaria gracilis GNS1m male)
ATGAGAATAACTTCTTGGAACGTTAACGGTCTAAAGAGCATTCGTCCTCT
GGCGCCACTCTTCGAAACTCTTGATTCGGACATAATCTGCTTGCAGGAAA
CAAAGATTTCAGGTCAAGGGGATCCAGAGCTCGAGAGCGTGGCGTTTGTA
GAAGGTTATGACTCGTTTTTCAGTATCTGTAAACAGAAGCGAGGATATAG
TGGAGTAGCAACATTCTGTCGAAAGGGGGTTGCAACACCTTCTGATGCCG
GTGAAGGGTTTTGTAACAATATAGGTGGCGCAGCTATTGAGATGCGACAT
TCAGGAAGTGCTTCCTGCTCAAAAACAGACCATGCTCCTGTCGATGAAGA
AAGAACGACACCAGTTTTCAACTCCGAAACCCTAGAGATTGTGAAGAGCG
AAGGTCGTTGCGTCATCACGGACCATGGGGGCTTCGTTCTCATCAATATT
TATGCCCCAGCTGTCACAGTGACAGAGCGTGTCGTCTTTAAGATACAATT
CCTACATGCCTTACAAGCAAAGGTGGAAGCTTTACGAAGGATTGGGCGAA
ATGTACTTGTCGTGGGTGACTTCAACATCTGTCCTTCCCTCAGAGATCGA
GCAGAGCCAGTACTTCCCAGTGAAACTAAAGAATGGAATCAAAGTCCAAC
TAGATCGTGGTTAAGAACTTTGTTAGAAACAAACAACATGGTTGACTCTT
TTCGAGAACTGAATCCCAATACAAACTCTGCCTACACTTGTTGGTCGGAA
GCCACAAAGAGCAGAGAGAACAACCATGGGGTGCGAATAGACCTTATCGT
AGTAAGTCGTGAATTCTTCAAGTCAAATGTAACAGAGGCGGCCATTTGGT
CTCATATCAAAGGATCAGATCACTGTCCGGTCACAGTTCGATTGCGGAAG
TCGAGCGATATGGTGATCTGTTCTAAACGTGTGCCCCCATTCTGCTCACA
AAACATGCCCAGATTTGGGTTCAGGCAACAGTCACTAACTACCCTGCTCA
TGAAACGAGACAAACCAGGCTCAGCTTCTGCCGTGCCATCCATTTTCTCA
GCTGGCAAGATTCGTAAGCTTTCCAAAGCGCCTGCAGCACCGTTGGTAG
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Coding sequence (CDS) from alignment at tig00000871_pilon:345511..346609-

>Ggra7233.t1 ID=Ggra7233.t1|Name=Ggra7233.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=882bp|location=Sequence derived from alignment at tig00000871_pilon:345511..346609- (Gracilaria gracilis GNS1m male)
ATGAGAATAACTTCTTGGAACGTTAACGGTCTAAAGAGCATTCGTCCTCT
GGCGCCACTCTTCGAAACTCTTGATTCGGACATAATCTGCTTGCAGGAAA
CAAAGATTTCAGGTCAAGGGGATCCAGAGCTCGAGAGCGTGGCGTTTGTA
GAAGGTTATGACTCGTTTTTCAGTATCTGTAAACAGAAGCGAGGATATAG
TGGAGTAGCAACATTCTGTCGAAAGGGGGTTGCAACACCTTCTGATGCCG
GTGAAGGGTTTTGTAACAATATAGGTGGCGCAGCTATTGAGATGCGACAT
TCAGGAAGTGCTTCCTGCTCAAAAACAGACCATGCTCCTGTCGATGAAGA
AAGAACGACACCAGTTTTCAACTCCGAAACCCTAGAGATTGTGAAGAGCG
AAGGTCGTTGCGTCATCACGGACCATGGGGGCTTCGTTCTCATCAATATT
TATGCCCCAGCTGTCACAGTGACAGAGCGTGTCGTCTTTAAGATACAATT
CCTACATGCCTTACAAGCAAAGGTGGAAGCTTTACGAAGGATTGGGCGAA
ATGTACTTGTCGTGGGTGACTTCAACATCTGTCCTTCCCTCAGAGATCGA
GCAGAGCCAGTACTTCCCAGTGAAACTAAAGAATGGAATCAAAGTCCAAC
TAGATCGTGGTTAAGAACTTTGTTAGAAACAAACAACATGGTTGACTCTT
TTCGAGAACTGAATCCCAATACAAACTCTGCCTACACTTGTTGGTCGGAA
GCCACAAAGAGCAGAGAGAACAACCATGGGGTGCGAATAGACCTTATCGT
AGCTCAGCTTCTGCCGTGCCATCCATTTTCTCAGCTGGCAAGATTCGTAA
GCTTTCCAAAGCGCCTGCAGCACCGTTGGTAG
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