Ggra7231.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7231.t1
Unique NameGgra7231.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length231
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:340993..342817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7231Ggra7231Gracilaria gracilis GNS1m malegenetig00000871_pilon 340993..342817 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7231.t1.stop1Ggra7231.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000871_pilon 340993..340995 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7231.t1.CDS1Ggra7231.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000871_pilon 340993..341421 -
Ggra7231.t1.CDS2Ggra7231.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000871_pilon 341915..341921 -
Ggra7231.t1.CDS3Ggra7231.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000871_pilon 342064..342119 -
Ggra7231.t1.CDS4Ggra7231.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000871_pilon 342200..342266 -
Ggra7231.t1.CDS5Ggra7231.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000871_pilon 342368..342384 -
Ggra7231.t1.CDS6Ggra7231.t1.CDS6Gracilaria gracilis GNS1m maleCDStig00000871_pilon 342600..342676 -
Ggra7231.t1.CDS7Ggra7231.t1.CDS7Gracilaria gracilis GNS1m maleCDStig00000871_pilon 342778..342817 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7231.t1.exon1Ggra7231.t1.exon1Gracilaria gracilis GNS1m maleexontig00000871_pilon 340993..341421 -
Ggra7231.t1.exon2Ggra7231.t1.exon2Gracilaria gracilis GNS1m maleexontig00000871_pilon 341915..341921 -
Ggra7231.t1.exon3Ggra7231.t1.exon3Gracilaria gracilis GNS1m maleexontig00000871_pilon 342064..342119 -
Ggra7231.t1.exon4Ggra7231.t1.exon4Gracilaria gracilis GNS1m maleexontig00000871_pilon 342200..342266 -
Ggra7231.t1.exon5Ggra7231.t1.exon5Gracilaria gracilis GNS1m maleexontig00000871_pilon 342368..342384 -
Ggra7231.t1.exon6Ggra7231.t1.exon6Gracilaria gracilis GNS1m maleexontig00000871_pilon 342600..342676 -
Ggra7231.t1.exon7Ggra7231.t1.exon7Gracilaria gracilis GNS1m maleexontig00000871_pilon 342778..342817 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7231.t1.intron1Ggra7231.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000871_pilon 341422..341914 -
Ggra7231.t1.intron2Ggra7231.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000871_pilon 341922..342063 -
Ggra7231.t1.intron3Ggra7231.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000871_pilon 342120..342199 -
Ggra7231.t1.intron4Ggra7231.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000871_pilon 342267..342367 -
Ggra7231.t1.intron5Ggra7231.t1.intron5Gracilaria gracilis GNS1m maleintrontig00000871_pilon 342385..342599 -
Ggra7231.t1.intron6Ggra7231.t1.intron6Gracilaria gracilis GNS1m maleintrontig00000871_pilon 342677..342777 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7231.t1.start1Ggra7231.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000871_pilon 342815..342817 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7231.t1Ggra7231.t1Gracilaria gracilis GNS1m malepolypeptidetig00000871_pilon 340993..342817 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7231.t1 ID=Ggra7231.t1|Name=Ggra7231.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=231bp
MAASNGDEETENEDVSIPEKGAACSAFSTAVNLWDPQFGGVTLRSHEAIA
FRSTTTTQARQKADPTRLITIAEYSTCISGIKLEERGILLVMELEYVTPD
TPRFHQVKEEPELLPLAEDNAAWDAGRFSRILNLEEEAHSDSGELEVRHS
GRKRNREDNERPSKRRRLDPFKPEDEVDSPFSIPISLEFSFNFASTVESI
TYKMAAVTIGSPPPPPEVNTLLAFNTPFYM*
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spliced messenger RNA

>Ggra7231.t1 ID=Ggra7231.t1|Name=Ggra7231.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=693bp|location=Sequence derived from alignment at tig00000871_pilon:340993..342817- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCAGTAATGGCGATGAGGAGACTGAGAACGAGGACGTATCTAT
ACCGGAAAAGGGTGCTGCCTGCAGTGCGTTTTCTACTGCTGTCAACCTGT
GGGACCCACAATTTGGTGGGGTAACGCTACGAAGCCACGAAGCGATAGCC
TTTAGATCCACAACGACTACGCAAGCAAGGCAGAAGGCTGATCCTACTAG
GTTGATTACAATTGCTGAATACTCCACATGCATAAGTGGAATCAAGCTTG
AAGAGAGGGGCATCCTACTTGTGATGGAACTTGAATACGTAACCCCGGAT
ACTCCCCGCTTCCATCAAGTAAAGGAAGAGCCAGAACTTCTTCCTCTGGC
TGAAGACAATGCAGCATGGGATGCTGGTCGGTTTTCGCGAATACTAAATC
TGGAAGAAGAGGCACACTCCGACTCGGGTGAATTGGAGGTACGTCATTCT
GGACGGAAACGGAACAGGGAGGACAACGAAAGGCCAAGCAAGAGACGACG
TCTTGACCCGTTCAAGCCGGAAGACGAAGTAGACTCTCCGTTTTCCATTC
CAATCTCTCTCGAATTTTCGTTCAACTTTGCTTCCACGGTTGAGTCCATC
ACCTATAAGATGGCAGCAGTGACCATAGGTTCTCCACCTCCACCACCTGA
GGTAAATACCTTGCTTGCTTTTAATACTCCGTTTTACATGTAA
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protein sequence of Ggra7231.t1

>Ggra7231.t1 ID=Ggra7231.t1|Name=Ggra7231.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=231bp
MAASNGDEETENEDVSIPEKGAACSAFSTAVNLWDPQFGGVTLRSHEAIA
FRSTTTTQARQKADPTRLITIAEYSTCISGIKLEERGILLVMELEYVTPD
TPRFHQVKEEPELLPLAEDNAAWDAGRFSRILNLEEEAHSDSGELEVRHS
GRKRNREDNERPSKRRRLDPFKPEDEVDSPFSIPISLEFSFNFASTVESI
TYKMAAVTIGSPPPPPEVNTLLAFNTPFYM*
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mRNA from alignment at tig00000871_pilon:340993..342817-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7231.t1 ID=Ggra7231.t1|Name=Ggra7231.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1825bp|location=Sequence derived from alignment at tig00000871_pilon:340993..342817- (Gracilaria gracilis GNS1m male)
ATGGCCGCCAGTAATGGCGATGAGGAGACTGAGAACGAGGGTGCGGAAAC
CGCTGGGCTCCTAGAAAACGAACGTTGGAGCTAAAAGTGTGGATAGACGT
GATCGGAGACTGTGAGCTGACTCAAACTTGGAGGCACACAGACGTATCTA
TACCGGAAAAGGGTGCTGCCTGCAGTGCGTTTTCTACTGCTGTCAACCTG
TGGGACCCACAATTTGGTGTTGGAAACCTGTGAAAAGAACCTGCAGTTCC
GTTTAATTTCCCCCGATTTTAATTACCAAGTGGCTGGCTTCCTACCACGA
AATTACCTTTGTCGGTAATATGTAAAGTTTAGTGCATTGCATCTACGAGG
ATTAGCCCTCTCTCTGAACTAACTTTGCTAACTTTACAAGGGTAGAGTTA
ATTCACCTTCACTATATCTGAGTTCTGATTCAGGGGGTAACGCTACGAAG
GTAAGAGCTCTTATTCGCACGAATGCCCTCCTATGAATCATCGCAATGAA
ACGTCACTCCCTCGGCGACCGAGACGGAGCTGCTAACAGAGGTTTTGATA
GCCACGAAGCGATAGCCTTTAGATCCACAACGACTACGCAAGCAAGGCAG
AAGGCTGATCCTACTAGGGTATTGTTTATAAATGTGTATCCATTCTTGTT
CGTGGGTTGTTGAGGATTCCAATCAGATATTACGATGCGCCGGTTCAGTT
GATTACAATTGCTGAATACTCCACATGCATAAGTGGAATCAAGCTTGAAG
AGAGGTAAGTGCAACATGATGTTCACCAAACCTCTGCGTTACAAGCATTG
TTAAATGGACGTACGTGCCAATAAAGAAAGAGAGGAGAGAGAGAGAGAGA
GAAAGAAGAAAATGTATGAAATGAATAACATCGTTCTCCGTTACAGGGGC
ATCGTGACAAATACGCACATACAGTACTACCCTTGGTACTTACAACCATG
GTCCTCCACTCTTGGCGCAGAAACCGATGGATTTTGCTCATTCGAATGGG
TCACGGAAACAGAAACTCTTGGGATACGTAGCTATTTCTTGTGACATGTA
GGTCAATCACGATGCCAGATTGCTTTGTAATGAAGGAGATTCGGACATAC
TCATGCACCACGATTGCATTTCGATGCGCCGTGAGGCGATCACTCACTGC
AACTCGTCGTGAAAAGAAGAAGTAATGTAATGTCTCCACTGCGAATTGGG
TGGCAGTGAATCTCAGCCAGGAATAAAAGAGGAGCCAGACGCCCTGCAGT
GTGAAGACAGCCAAAGCGCATCTCATTGTCCAACCTGGTGCCCAAAGACG
ATTGTCTTCCATAACATTTCCGCCTTATATATCTTGCTTCTGTTTGCTTT
CAATTCCTCTTTTGCTCAACTCTTCTTGGAACTTGTTCTTTGAAAGCTAC
TTGTGATGGAACTTGAATACGTAACCCCGGATACTCCCCGCTTCCATCAA
GTAAAGGAAGAGCCAGAACTTCTTCCTCTGGCTGAAGACAATGCAGCATG
GGATGCTGGTCGGTTTTCGCGAATACTAAATCTGGAAGAAGAGGCACACT
CCGACTCGGGTGAATTGGAGGTACGTCATTCTGGACGGAAACGGAACAGG
GAGGACAACGAAAGGCCAAGCAAGAGACGACGTCTTGACCCGTTCAAGCC
GGAAGACGAAGTAGACTCTCCGTTTTCCATTCCAATCTCTCTCGAATTTT
CGTTCAACTTTGCTTCCACGGTTGAGTCCATCACCTATAAGATGGCAGCA
GTGACCATAGGTTCTCCACCTCCACCACCTGAGGTAAATACCTTGCTTGC
TTTTAATACTCCGTTTTACATGTAA
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Coding sequence (CDS) from alignment at tig00000871_pilon:340993..342817-

>Ggra7231.t1 ID=Ggra7231.t1|Name=Ggra7231.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=693bp|location=Sequence derived from alignment at tig00000871_pilon:340993..342817- (Gracilaria gracilis GNS1m male)
ATGGCCGCCAGTAATGGCGATGAGGAGACTGAGAACGAGGACGTATCTAT
ACCGGAAAAGGGTGCTGCCTGCAGTGCGTTTTCTACTGCTGTCAACCTGT
GGGACCCACAATTTGGTGGGGTAACGCTACGAAGCCACGAAGCGATAGCC
TTTAGATCCACAACGACTACGCAAGCAAGGCAGAAGGCTGATCCTACTAG
GTTGATTACAATTGCTGAATACTCCACATGCATAAGTGGAATCAAGCTTG
AAGAGAGGGGCATCCTACTTGTGATGGAACTTGAATACGTAACCCCGGAT
ACTCCCCGCTTCCATCAAGTAAAGGAAGAGCCAGAACTTCTTCCTCTGGC
TGAAGACAATGCAGCATGGGATGCTGGTCGGTTTTCGCGAATACTAAATC
TGGAAGAAGAGGCACACTCCGACTCGGGTGAATTGGAGGTACGTCATTCT
GGACGGAAACGGAACAGGGAGGACAACGAAAGGCCAAGCAAGAGACGACG
TCTTGACCCGTTCAAGCCGGAAGACGAAGTAGACTCTCCGTTTTCCATTC
CAATCTCTCTCGAATTTTCGTTCAACTTTGCTTCCACGGTTGAGTCCATC
ACCTATAAGATGGCAGCAGTGACCATAGGTTCTCCACCTCCACCACCTGA
GGTAAATACCTTGCTTGCTTTTAATACTCCGTTTTACATGTAA
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