Ggra7206.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7206.t1
Unique NameGgra7206.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length293
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:197114..198218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7206Ggra7206Gracilaria gracilis GNS1m malegenetig00000871_pilon 197114..198218 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7206.t1Ggra7206.t1Gracilaria gracilis GNS1m malepolypeptidetig00000871_pilon 197114..198218 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7206.t1.stop1Ggra7206.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000871_pilon 197114..197116 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7206.t1.CDS1Ggra7206.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000871_pilon 197114..197207 -
Ggra7206.t1.CDS2Ggra7206.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000871_pilon 197301..197956 -
Ggra7206.t1.CDS3Ggra7206.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000871_pilon 198016..198129 -
Ggra7206.t1.CDS4Ggra7206.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000871_pilon 198204..198218 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7206.t1.exon1Ggra7206.t1.exon1Gracilaria gracilis GNS1m maleexontig00000871_pilon 197114..197207 -
Ggra7206.t1.exon2Ggra7206.t1.exon2Gracilaria gracilis GNS1m maleexontig00000871_pilon 197301..197956 -
Ggra7206.t1.exon3Ggra7206.t1.exon3Gracilaria gracilis GNS1m maleexontig00000871_pilon 198016..198129 -
Ggra7206.t1.exon4Ggra7206.t1.exon4Gracilaria gracilis GNS1m maleexontig00000871_pilon 198204..198218 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7206.t1.intron1Ggra7206.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000871_pilon 197208..197300 -
Ggra7206.t1.intron2Ggra7206.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000871_pilon 197957..198015 -
Ggra7206.t1.intron3Ggra7206.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000871_pilon 198130..198203 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7206.t1.start1Ggra7206.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000871_pilon 198216..198218 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7206.t1 ID=Ggra7206.t1|Name=Ggra7206.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=293bp
MQVARSYEIAAWNGDDYRNAHQWAVWVQENIEDFSNPQYLRQMLNASGLP
MSRLLNAERAFFDSVLGFEGVNADILSHLVASAVSKKDEADDRLRCLRDA
LADAIERKNLLKSLDGILQQVGGNSDTVAVEAKALALLQIHERTEDLANL
DLEEQGVVELLCWEAAFAFRRSSKVRNTLIELIKGCIARGHYGDIRVMSE
LCEWDVSIFDGYLSSLLENLRRINREGQEGNSLRRENDEEAENDLDCIEL
RKRIQSLVDTSGVVGTISASVSHEFCVRAGMPPFFRLHVNVS*
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spliced messenger RNA

>Ggra7206.t1 ID=Ggra7206.t1|Name=Ggra7206.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=879bp|location=Sequence derived from alignment at tig00000871_pilon:197114..198218- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGTTGCTCGAAGCTATGAGATTGCTGCTTGGAATGGAGACGACTA
TCGGAATGCACATCAATGGGCGGTATGGGTTCAAGAAAACATTGAAGACT
TCTCCAACCCACAGTATCTTAGACAAATGTTGAATGCGAGTGGGTTGCCG
ATGAGTAGATTGCTAAACGCGGAGCGAGCGTTTTTTGATTCCGTACTGGG
TTTCGAAGGCGTGAATGCTGATATATTGTCTCACTTGGTTGCATCAGCCG
TGTCCAAGAAGGACGAAGCGGACGACAGGCTACGCTGTTTACGCGATGCA
CTCGCAGATGCAATTGAAAGAAAGAACTTGTTGAAATCTCTCGATGGCAT
TCTTCAGCAAGTTGGTGGGAATAGTGACACCGTCGCGGTTGAAGCAAAAG
CACTGGCGCTATTGCAAATTCATGAACGAACTGAAGACTTGGCCAATTTA
GATCTTGAAGAACAGGGGGTGGTGGAGCTCTTGTGTTGGGAAGCTGCATT
CGCATTTAGGCGGTCGTCGAAAGTGCGCAATACCCTAATAGAACTTATCA
AAGGGTGCATCGCAAGAGGACATTACGGTGATATACGCGTCATGAGTGAA
CTATGTGAATGGGATGTATCTATTTTCGATGGCTACCTGAGCAGTCTTCT
CGAAAATCTCCGTCGCATAAACCGTGAAGGACAGGAAGGGAACAGTCTAA
GAAGGGAGAACGACGAAGAAGCCGAGAATGACCTGGACTGTATTGAGTTG
AGAAAGAGAATTCAAAGCCTAGTTGATACGAGTGGGGTCGTTGGAACTAT
TTCTGCAAGCGTATCGCATGAGTTTTGTGTGAGGGCAGGTATGCCGCCGT
TTTTTCGTCTGCATGTTAATGTATCATGA
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protein sequence of Ggra7206.t1

>Ggra7206.t1 ID=Ggra7206.t1|Name=Ggra7206.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=293bp
MQVARSYEIAAWNGDDYRNAHQWAVWVQENIEDFSNPQYLRQMLNASGLP
MSRLLNAERAFFDSVLGFEGVNADILSHLVASAVSKKDEADDRLRCLRDA
LADAIERKNLLKSLDGILQQVGGNSDTVAVEAKALALLQIHERTEDLANL
DLEEQGVVELLCWEAAFAFRRSSKVRNTLIELIKGCIARGHYGDIRVMSE
LCEWDVSIFDGYLSSLLENLRRINREGQEGNSLRRENDEEAENDLDCIEL
RKRIQSLVDTSGVVGTISASVSHEFCVRAGMPPFFRLHVNVS*
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mRNA from alignment at tig00000871_pilon:197114..198218-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7206.t1 ID=Ggra7206.t1|Name=Ggra7206.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1105bp|location=Sequence derived from alignment at tig00000871_pilon:197114..198218- (Gracilaria gracilis GNS1m male)
ATGCAGGTTGCTCGAGTACGTTAGAATTATGCGTTCTCCCTTGCGCGTTT
GAAGAAACGATTAGGAAAGCTAATATTGATTTCTTGTAGAGCTATGAGAT
TGCTGCTTGGAATGGAGACGACTATCGGAATGCACATCAATGGGCGGTAT
GGGTTCAAGAAAACATTGAAGACTTCTCCAACCCACAGTATCTTAGACAA
ATGGTACGTCAATTGCAAGTTCTCACATCCATACGAATTCTTGCCTCTAA
CTGAAACAACAGTTGAATGCGAGTGGGTTGCCGATGAGTAGATTGCTAAA
CGCGGAGCGAGCGTTTTTTGATTCCGTACTGGGTTTCGAAGGCGTGAATG
CTGATATATTGTCTCACTTGGTTGCATCAGCCGTGTCCAAGAAGGACGAA
GCGGACGACAGGCTACGCTGTTTACGCGATGCACTCGCAGATGCAATTGA
AAGAAAGAACTTGTTGAAATCTCTCGATGGCATTCTTCAGCAAGTTGGTG
GGAATAGTGACACCGTCGCGGTTGAAGCAAAAGCACTGGCGCTATTGCAA
ATTCATGAACGAACTGAAGACTTGGCCAATTTAGATCTTGAAGAACAGGG
GGTGGTGGAGCTCTTGTGTTGGGAAGCTGCATTCGCATTTAGGCGGTCGT
CGAAAGTGCGCAATACCCTAATAGAACTTATCAAAGGGTGCATCGCAAGA
GGACATTACGGTGATATACGCGTCATGAGTGAACTATGTGAATGGGATGT
ATCTATTTTCGATGGCTACCTGAGCAGTCTTCTCGAAAATCTCCGTCGCA
TAAACCGTGAAGGACAGGAAGGGAACAGTCTAAGAAGGGAGAACGACGAA
GAAGCCGAGAATGACCTGGACTGTATTGAGTTGAGAAAGAGAATTCAAAG
CCTAGTTGATACGAGTGGGTGCGTCTGATTACTTACATCTATTCTGGGTT
AATACAAGTCTCAAACACAGAGTGACTCAACTAACCAAGTTCGTTTCTTA
CATTTCGACAGGGTCGTTGGAACTATTTCTGCAAGCGTATCGCATGAGTT
TTGTGTGAGGGCAGGTATGCCGCCGTTTTTTCGTCTGCATGTTAATGTAT
CATGA
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Coding sequence (CDS) from alignment at tig00000871_pilon:197114..198218-

>Ggra7206.t1 ID=Ggra7206.t1|Name=Ggra7206.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=879bp|location=Sequence derived from alignment at tig00000871_pilon:197114..198218- (Gracilaria gracilis GNS1m male)
ATGCAGGTTGCTCGAAGCTATGAGATTGCTGCTTGGAATGGAGACGACTA
TCGGAATGCACATCAATGGGCGGTATGGGTTCAAGAAAACATTGAAGACT
TCTCCAACCCACAGTATCTTAGACAAATGTTGAATGCGAGTGGGTTGCCG
ATGAGTAGATTGCTAAACGCGGAGCGAGCGTTTTTTGATTCCGTACTGGG
TTTCGAAGGCGTGAATGCTGATATATTGTCTCACTTGGTTGCATCAGCCG
TGTCCAAGAAGGACGAAGCGGACGACAGGCTACGCTGTTTACGCGATGCA
CTCGCAGATGCAATTGAAAGAAAGAACTTGTTGAAATCTCTCGATGGCAT
TCTTCAGCAAGTTGGTGGGAATAGTGACACCGTCGCGGTTGAAGCAAAAG
CACTGGCGCTATTGCAAATTCATGAACGAACTGAAGACTTGGCCAATTTA
GATCTTGAAGAACAGGGGGTGGTGGAGCTCTTGTGTTGGGAAGCTGCATT
CGCATTTAGGCGGTCGTCGAAAGTGCGCAATACCCTAATAGAACTTATCA
AAGGGTGCATCGCAAGAGGACATTACGGTGATATACGCGTCATGAGTGAA
CTATGTGAATGGGATGTATCTATTTTCGATGGCTACCTGAGCAGTCTTCT
CGAAAATCTCCGTCGCATAAACCGTGAAGGACAGGAAGGGAACAGTCTAA
GAAGGGAGAACGACGAAGAAGCCGAGAATGACCTGGACTGTATTGAGTTG
AGAAAGAGAATTCAAAGCCTAGTTGATACGAGTGGGGTCGTTGGAACTAT
TTCTGCAAGCGTATCGCATGAGTTTTGTGTGAGGGCAGGTATGCCGCCGT
TTTTTCGTCTGCATGTTAATGTATCATGA
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