Ggra7193.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7193.t1
Unique NameGgra7193.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length141
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:166669..168001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7193Ggra7193Gracilaria gracilis GNS1m malegenetig00000871_pilon 166669..168001 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7193.t1Ggra7193.t1Gracilaria gracilis GNS1m malepolypeptidetig00000871_pilon 166669..168001 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7193.t1.start1Ggra7193.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000871_pilon 166669..166671 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7193.t1.CDS1Ggra7193.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000871_pilon 166669..166777 +
Ggra7193.t1.CDS2Ggra7193.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000871_pilon 167584..167618 +
Ggra7193.t1.CDS3Ggra7193.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000871_pilon 167723..168001 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7193.t1.exon1Ggra7193.t1.exon1Gracilaria gracilis GNS1m maleexontig00000871_pilon 166669..166777 +
Ggra7193.t1.exon2Ggra7193.t1.exon2Gracilaria gracilis GNS1m maleexontig00000871_pilon 167584..167618 +
Ggra7193.t1.exon3Ggra7193.t1.exon3Gracilaria gracilis GNS1m maleexontig00000871_pilon 167723..168001 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7193.t1.intron1Ggra7193.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000871_pilon 166778..167583 +
Ggra7193.t1.intron2Ggra7193.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000871_pilon 167619..167722 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7193.t1.stop1Ggra7193.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000871_pilon 167999..168001 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7193.t1 ID=Ggra7193.t1|Name=Ggra7193.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=141bp
MSEGALSRLLPFSGIGIGFGFGFGCGGVVGCGIGGKGIKGVNIPGFGWGV
GCGVGFGFGWGLFLLGIGTPVYSTTKLLGIEDRKMDKRAVEIDGDLAAGK
RPYGALPESLSTKDELMDRFIRSLIIKREKMRRNRGQFMQ*
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spliced messenger RNA

>Ggra7193.t1 ID=Ggra7193.t1|Name=Ggra7193.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=423bp|location=Sequence derived from alignment at tig00000871_pilon:166669..168001+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGAAGGGGCTCTTAGCCGTCTCTTACCGTTTAGTggaatcggcat
cggattcggttttggcttcggCTGTGGTGGCGTTGTTGGATGCGGCATAG
GCGGCAAAGGGATAAAGGGCGTAAACATTCCTGGCTTCGGATGGGGAGTG
GGATGTGGAGTGGGGTTTGGGTTCGGTTGGGGGTTATTCCTACTTGGCAT
CGGCACACCAGTATACTCCACCACAAAACTGTTAGGGATCGAGGATCGTA
AAATGGACAAGAGAGCCGTCGAGATCGATGGCGATCTCGCAGCCGGAAAA
CGTCCATACGGGGCCCTTCCAGAAAGTCTTTCGACCAAAGACGAGTTGAT
GGACCGTTTCATCCGTTCTTTGATCATCAAACGAGAGAAGATGCGCAGGA
ATCGCGGTCAGTTCATGCAATGA
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protein sequence of Ggra7193.t1

>Ggra7193.t1 ID=Ggra7193.t1|Name=Ggra7193.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=141bp
MSEGALSRLLPFSGIGIGFGFGFGCGGVVGCGIGGKGIKGVNIPGFGWGV
GCGVGFGFGWGLFLLGIGTPVYSTTKLLGIEDRKMDKRAVEIDGDLAAGK
RPYGALPESLSTKDELMDRFIRSLIIKREKMRRNRGQFMQ*
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mRNA from alignment at tig00000871_pilon:166669..168001+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7193.t1 ID=Ggra7193.t1|Name=Ggra7193.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1333bp|location=Sequence derived from alignment at tig00000871_pilon:166669..168001+ (Gracilaria gracilis GNS1m male)
ATGAGTGAAGGGGCTCTTAGCCGTCTCTTACCGTTTAGTggaatcggcat
cggattcggttttggcttcggCTGTGGTGGCGTTGTTGGATGCGGCATAG
GCGGCAAAGGTAAAGTGAATCCCTCCCTCTCATTGCGTCTTCATGAGGCG
AGTTTATCTCACGCGCAGCAACCTGCCCTCGGTTCCGCCTGCATCTCCGC
AGATAGCGCCCAATTTCTCTAAGAGATTGAAACCTCTGTTGCTTTCGACT
CACTCGCTCGACATGCTCACGCCCCGGCTTGAACCGTCGCATTCCTTTCC
GTACCCTGATAGGCAACCCGGCCCCATTCCACCACACGGAACCGATCGAT
TGGATGCGCCACAGAAACCAAACGCATACGATCACTTTCTAACAAAGGCG
AGACTATTGCTGGAAAGCGAGTTTCCTAGCCAGCCTTCGTCTCGAATAAG
AGAGTTGGAAGAGTCTTTGGAGAACGATCTGTACACTGTGAGGTTCACAT
GGAGTGAAGGTGCTCAGGAATCAGTTTTCCTAACTGGTTCATTCAATGGC
TGGGGCGCACCCATCGCTATGCACAAGAGAAGTACACCAGAGCAGGGAGA
AGCGATATGGGAGTGTGTGGTACGCCTCTCAGCCGGTGAATATCGCTACA
AATACGTGGTGGACGGAGAATTGCGAGTTGACAGAGAGCGACTGTGTGAA
TATGTTGGTTTTGTTCCATTTGCGAACAAACTGATCATTGAGGACGCTGA
GAAAGCATGACGAAATGAAATCAGCAGCAAATGAATTAACTTCAGAAGAA
CTGTTTACTATAGACAAAATTGGTACTAACTACGCTTTTTCCGTATCCGT
GTGGCTCTACAAACCAATGGTCTTCGTCCTTGTTATCAAATATACACTCT
TACATATTCCCACAGGGATAAAGGGCGTAAACATTCCTGGCTTCGGATGG
GTAAGTCGTTACGAACCGTCGAAAGAGCAAGGGAAGTTGCTCTCAATGAA
AAGCATAAAACTGACAAGAAGACTCTCTCACCTGCGCGCGGTGTACAAAA
ATAGGGAGTGGGATGTGGAGTGGGGTTTGGGTTCGGTTGGGGGTTATTCC
TACTTGGCATCGGCACACCAGTATACTCCACCACAAAACTGTTAGGGATC
GAGGATCGTAAAATGGACAAGAGAGCCGTCGAGATCGATGGCGATCTCGC
AGCCGGAAAACGTCCATACGGGGCCCTTCCAGAAAGTCTTTCGACCAAAG
ACGAGTTGATGGACCGTTTCATCCGTTCTTTGATCATCAAACGAGAGAAG
ATGCGCAGGAATCGCGGTCAGTTCATGCAATGA
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Coding sequence (CDS) from alignment at tig00000871_pilon:166669..168001+

>Ggra7193.t1 ID=Ggra7193.t1|Name=Ggra7193.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=423bp|location=Sequence derived from alignment at tig00000871_pilon:166669..168001+ (Gracilaria gracilis GNS1m male)
ATGAGTGAAGGGGCTCTTAGCCGTCTCTTACCGTTTAGTggaatcggcat
cggattcggttttggcttcggCTGTGGTGGCGTTGTTGGATGCGGCATAG
GCGGCAAAGGGATAAAGGGCGTAAACATTCCTGGCTTCGGATGGGGAGTG
GGATGTGGAGTGGGGTTTGGGTTCGGTTGGGGGTTATTCCTACTTGGCAT
CGGCACACCAGTATACTCCACCACAAAACTGTTAGGGATCGAGGATCGTA
AAATGGACAAGAGAGCCGTCGAGATCGATGGCGATCTCGCAGCCGGAAAA
CGTCCATACGGGGCCCTTCCAGAAAGTCTTTCGACCAAAGACGAGTTGAT
GGACCGTTTCATCCGTTCTTTGATCATCAAACGAGAGAAGATGCGCAGGA
ATCGCGGTCAGTTCATGCAATGA
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