Ggra7190.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7190.t1
Unique NameGgra7190.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length242
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:156494..157219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10224.XP_002742246.1
Preferred nameDPM1
PFAMsGlycos_transf_2
Max annot lvl33208|Metazoa
KEGG rclassRC00005
KEGG koko:K00721
KEGG ReactionR01009
KEGG Pathwayko00510,ko01100,map00510,map01100
GOsGO:0000030,GO:0003674,GO:0003824,GO:0004169,GO:0004582,GO:0005488,GO:0005537,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006066,GO:0006139,GO:0006464,GO:0006486,GO:0006493,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006720,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016093,GO:0016740,GO:0016757,GO:0016758,GO:0019348,GO:0019538,GO:0019637,GO:0019673,GO:0030246,GO:0031501,GO:0031984,GO:0032991,GO:0033185,GO:0034641,GO:0034645,GO:0035268,GO:0035269,GO:0036094,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0043170,GO:0043178,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046483,GO:0046486,GO:0046488,GO:0048029,GO:0055086,GO:0070085,GO:0071704,GO:0090407,GO:0097502,GO:0098827,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1902494,GO:1903509,GO:1990234
Evalue2.26e-108
EggNOG OGsCOG0463@1|root,KOG2978@2759|Eukaryota,38E12@33154|Opisthokonta,3BESW@33208|Metazoa,3CW06@33213|Bilateria
EC2.4.1.83
Descriptiondolichyl-phosphate beta-D-mannosyltransferase activity
COG categoryM
CAZyGT2
BRITEko00000,ko00001,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7190Ggra7190Gracilaria gracilis GNS1m malegenetig00000871_pilon 156494..157219 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7190.t1.start1Ggra7190.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000871_pilon 156494..156496 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7190.t1.CDS1Ggra7190.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000871_pilon 156494..157219 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7190.t1.exon1Ggra7190.t1.exon1Gracilaria gracilis GNS1m maleexontig00000871_pilon 156494..157219 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7190.t1.stop1Ggra7190.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000871_pilon 157217..157219 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7190.t1Ggra7190.t1Gracilaria gracilis GNS1m malepolypeptidetig00000871_pilon 156494..157219 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7190.t1 ID=Ggra7190.t1|Name=Ggra7190.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=242bp
MTNTTADKYSVLLPTFNERENLPYVIFFLDEAFNQAQVDYEIIIVDDSSP
DGTLQVAKALQQSYGADKIVLRPRQCRAGLGSAYMHGAKHATGNYIIILD
ADLSHHPKFIPTFIDKQKQTSCDVVTGTRYVPDGGVYGWTLRRKLVSRVA
NYLAHIILRPGVSDLTGSFRLYRRKCFDSIMNQMEARGYVFQMEIIVRAK
RMGLDVREVPITFVDRLFGESKMGADEIIQYLIQLWRLAWV*
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spliced messenger RNA

>Ggra7190.t1 ID=Ggra7190.t1|Name=Ggra7190.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=726bp|location=Sequence derived from alignment at tig00000871_pilon:156494..157219+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCAACACCACTGCCGATAAGTACTCCGTGTTGCTGCCCACCTTCAA
CGAGCGCGAGAATCTGCCCTACGTCATTTTCTTCCTGGACGAGGCGTTCA
ACCAAGCTCAAGTCGACTACGAAATCATCATTGTGGATGACTCTTCGCCT
GATGGAACGCTGCAAGTCGCAAAGGCGCTCCAGCAGTCATATGGCGCTGA
CAAGATCGTCCTGCGTCCGCGCCAGTGTCGAGCGGGCTTGGGGAGTGCAT
ATATGCACGGTGCCAAGCATGCCACTGGTAATTATATCATCATACTGGAT
GCAGACCTCTCGCACCACCCCAAATTCATCCCGACCTTCATCGACAAGCA
GAAGCAAACTTCCTGCGACGTCGTCACTGGAACGCGTTACGTCCCCGACG
GCGGCGTGTATGGATGGACTCTGAGAAGAAAGCTCGTGTCACGCGTCGCC
AACTATCTCGCCCATATCATTTTGCGCCCAGGCGTCTCAGATCTTACGGG
CAGCTTTCGCTTGTACAGGAGAAAGTGTTTTGACTCCATTATGAATCAGA
TGGAAGCCAGGGGCTACGTTTTCCAAATGGAAATTATTGTCAGGGCGAAG
CGAATGGGTTTGGATGTACGCGAGGTTCCCATTACGTTTGTGGACAGACT
TTTTGGCGAGAGCAAGATGGGTGCGGATGAAATCATTCAATATCTAATTC
AGCTATGGCGCTTGGCCTGGGTCTAG
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protein sequence of Ggra7190.t1

>Ggra7190.t1 ID=Ggra7190.t1|Name=Ggra7190.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=242bp
MTNTTADKYSVLLPTFNERENLPYVIFFLDEAFNQAQVDYEIIIVDDSSP
DGTLQVAKALQQSYGADKIVLRPRQCRAGLGSAYMHGAKHATGNYIIILD
ADLSHHPKFIPTFIDKQKQTSCDVVTGTRYVPDGGVYGWTLRRKLVSRVA
NYLAHIILRPGVSDLTGSFRLYRRKCFDSIMNQMEARGYVFQMEIIVRAK
RMGLDVREVPITFVDRLFGESKMGADEIIQYLIQLWRLAWV*
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mRNA from alignment at tig00000871_pilon:156494..157219+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7190.t1 ID=Ggra7190.t1|Name=Ggra7190.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=726bp|location=Sequence derived from alignment at tig00000871_pilon:156494..157219+ (Gracilaria gracilis GNS1m male)
ATGACCAACACCACTGCCGATAAGTACTCCGTGTTGCTGCCCACCTTCAA
CGAGCGCGAGAATCTGCCCTACGTCATTTTCTTCCTGGACGAGGCGTTCA
ACCAAGCTCAAGTCGACTACGAAATCATCATTGTGGATGACTCTTCGCCT
GATGGAACGCTGCAAGTCGCAAAGGCGCTCCAGCAGTCATATGGCGCTGA
CAAGATCGTCCTGCGTCCGCGCCAGTGTCGAGCGGGCTTGGGGAGTGCAT
ATATGCACGGTGCCAAGCATGCCACTGGTAATTATATCATCATACTGGAT
GCAGACCTCTCGCACCACCCCAAATTCATCCCGACCTTCATCGACAAGCA
GAAGCAAACTTCCTGCGACGTCGTCACTGGAACGCGTTACGTCCCCGACG
GCGGCGTGTATGGATGGACTCTGAGAAGAAAGCTCGTGTCACGCGTCGCC
AACTATCTCGCCCATATCATTTTGCGCCCAGGCGTCTCAGATCTTACGGG
CAGCTTTCGCTTGTACAGGAGAAAGTGTTTTGACTCCATTATGAATCAGA
TGGAAGCCAGGGGCTACGTTTTCCAAATGGAAATTATTGTCAGGGCGAAG
CGAATGGGTTTGGATGTACGCGAGGTTCCCATTACGTTTGTGGACAGACT
TTTTGGCGAGAGCAAGATGGGTGCGGATGAAATCATTCAATATCTAATTC
AGCTATGGCGCTTGGCCTGGGTCTAG
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Coding sequence (CDS) from alignment at tig00000871_pilon:156494..157219+

>Ggra7190.t1 ID=Ggra7190.t1|Name=Ggra7190.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=726bp|location=Sequence derived from alignment at tig00000871_pilon:156494..157219+ (Gracilaria gracilis GNS1m male)
ATGACCAACACCACTGCCGATAAGTACTCCGTGTTGCTGCCCACCTTCAA
CGAGCGCGAGAATCTGCCCTACGTCATTTTCTTCCTGGACGAGGCGTTCA
ACCAAGCTCAAGTCGACTACGAAATCATCATTGTGGATGACTCTTCGCCT
GATGGAACGCTGCAAGTCGCAAAGGCGCTCCAGCAGTCATATGGCGCTGA
CAAGATCGTCCTGCGTCCGCGCCAGTGTCGAGCGGGCTTGGGGAGTGCAT
ATATGCACGGTGCCAAGCATGCCACTGGTAATTATATCATCATACTGGAT
GCAGACCTCTCGCACCACCCCAAATTCATCCCGACCTTCATCGACAAGCA
GAAGCAAACTTCCTGCGACGTCGTCACTGGAACGCGTTACGTCCCCGACG
GCGGCGTGTATGGATGGACTCTGAGAAGAAAGCTCGTGTCACGCGTCGCC
AACTATCTCGCCCATATCATTTTGCGCCCAGGCGTCTCAGATCTTACGGG
CAGCTTTCGCTTGTACAGGAGAAAGTGTTTTGACTCCATTATGAATCAGA
TGGAAGCCAGGGGCTACGTTTTCCAAATGGAAATTATTGTCAGGGCGAAG
CGAATGGGTTTGGATGTACGCGAGGTTCCCATTACGTTTGTGGACAGACT
TTTTGGCGAGAGCAAGATGGGTGCGGATGAAATCATTCAATATCTAATTC
AGCTATGGCGCTTGGCCTGGGTCTAG
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