Ggra7130.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7130.t1
Unique NameGgra7130.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length260
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000062_piloncontigtig00000062_pilon:601160..601939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5762.XP_002679357.1
PFAMs2OG-FeII_Oxy_2
Max annot lvl2759|Eukaryota
KEGG koko:K10766,ko:K10770
Evalue4.63e-12
EggNOG OGsCOG3145@1|root,KOG4176@2759|Eukaryota
EC2.1.1.229
Descriptiondioxygenase activity
COG categoryL
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7130Ggra7130Gracilaria gracilis GNS1m malegenetig00000062_pilon 601160..601939 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7130.t1.stop1Ggra7130.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000062_pilon 601160..601162 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7130.t1.CDS1Ggra7130.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000062_pilon 601160..601939 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7130.t1.exon1Ggra7130.t1.exon1Gracilaria gracilis GNS1m maleexontig00000062_pilon 601160..601939 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7130.t1.start1Ggra7130.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000062_pilon 601937..601939 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7130.t1Ggra7130.t1Gracilaria gracilis GNS1m malepolypeptidetig00000062_pilon 601160..601939 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7130.t1 ID=Ggra7130.t1|Name=Ggra7130.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=260bp
MSSDRFCLPSFFSTPKSRPNAVPGFILREDAFTTEEEAALIHAVDTSSAQ
WTRRRTRITKNYGPYYFYHERNTAEGRFRYTDGKIMHTPLPDFLETLVMP
ILTREVPQLSDFKPNQLHVALYKKEEDAKIHMHNDNKMGELGPYIVGMCL
LSDCYMTFLRPKDSKKRVLHLPRRCVYVMTGESHYEWRHGILKGQTSSDR
VSFTLREVGKLAVEDGARVRKSSHAPSAQSIREQAAKDEKAHRRVAGQLH
INLAESLDT*
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spliced messenger RNA

>Ggra7130.t1 ID=Ggra7130.t1|Name=Ggra7130.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=780bp|location=Sequence derived from alignment at tig00000062_pilon:601160..601939- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTCCGATCGCTTTTGTCTACCTTCGTTCTTTTCAACGCCCAAGTC
GCGCCCGAACGCGGTTCCAGGCTTCATTCTTCGAGAGGACGCATTCACCA
CGGAGGAGGAGGCGGCACTCATTCACGCAGTGGATACATCATCTGCACAG
TGGACCAGGCGTCGTACCAGGATTACCAAGAACTACGGGCCATACTATTT
TTACCATGAACGTAACACAGCTGAGGGTCGCTTTCGATACACGGATGGAA
AAATCATGCATACGCCCCTTCCGGACTTTCTTGAAACGCTCGTGATGCCC
ATTCTCACTAGAGAAGTACCGCAGCTTTCCGATTTTAAACCGAATCAGTT
GCATGTGGCATTGTACAAAAAGGAGGAGGATGCGAAGATCCACATGCACA
ACGACAACAAGATGGGTGAGCTAGGGCCATATATCGTTGGAATGTGTCTT
CTATCGGATTGCTACATGACGTTTCTGAGGCCAAAGGATAGCAAGAAACG
CGTCTTGCATCTACCAAGAAGATGTGTATACGTCATGACTGGGGAGAGCC
ATTACGAGTGGAGGCATGGAATTCTTAAAGGCCAAACATCTAGTGATAGA
GTGAGCTTTACGTTGCGAGAAGTGGGAAAGCTTGCAGTTGAAGACGGGGC
GCGAGTTAGAAAGAGTAGTCACGCACCAAGTGCGCAGAGCATCCGCGAGC
AGGCTGCGAAAGACGAAAAAGCGCATCGAAGAGTTGCTGGGCAGCTGCAT
ATTAACCTTGCGGAATCACTCGACACCTGA
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protein sequence of Ggra7130.t1

>Ggra7130.t1 ID=Ggra7130.t1|Name=Ggra7130.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=260bp
MSSDRFCLPSFFSTPKSRPNAVPGFILREDAFTTEEEAALIHAVDTSSAQ
WTRRRTRITKNYGPYYFYHERNTAEGRFRYTDGKIMHTPLPDFLETLVMP
ILTREVPQLSDFKPNQLHVALYKKEEDAKIHMHNDNKMGELGPYIVGMCL
LSDCYMTFLRPKDSKKRVLHLPRRCVYVMTGESHYEWRHGILKGQTSSDR
VSFTLREVGKLAVEDGARVRKSSHAPSAQSIREQAAKDEKAHRRVAGQLH
INLAESLDT*
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mRNA from alignment at tig00000062_pilon:601160..601939-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7130.t1 ID=Ggra7130.t1|Name=Ggra7130.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=780bp|location=Sequence derived from alignment at tig00000062_pilon:601160..601939- (Gracilaria gracilis GNS1m male)
ATGTCCTCCGATCGCTTTTGTCTACCTTCGTTCTTTTCAACGCCCAAGTC
GCGCCCGAACGCGGTTCCAGGCTTCATTCTTCGAGAGGACGCATTCACCA
CGGAGGAGGAGGCGGCACTCATTCACGCAGTGGATACATCATCTGCACAG
TGGACCAGGCGTCGTACCAGGATTACCAAGAACTACGGGCCATACTATTT
TTACCATGAACGTAACACAGCTGAGGGTCGCTTTCGATACACGGATGGAA
AAATCATGCATACGCCCCTTCCGGACTTTCTTGAAACGCTCGTGATGCCC
ATTCTCACTAGAGAAGTACCGCAGCTTTCCGATTTTAAACCGAATCAGTT
GCATGTGGCATTGTACAAAAAGGAGGAGGATGCGAAGATCCACATGCACA
ACGACAACAAGATGGGTGAGCTAGGGCCATATATCGTTGGAATGTGTCTT
CTATCGGATTGCTACATGACGTTTCTGAGGCCAAAGGATAGCAAGAAACG
CGTCTTGCATCTACCAAGAAGATGTGTATACGTCATGACTGGGGAGAGCC
ATTACGAGTGGAGGCATGGAATTCTTAAAGGCCAAACATCTAGTGATAGA
GTGAGCTTTACGTTGCGAGAAGTGGGAAAGCTTGCAGTTGAAGACGGGGC
GCGAGTTAGAAAGAGTAGTCACGCACCAAGTGCGCAGAGCATCCGCGAGC
AGGCTGCGAAAGACGAAAAAGCGCATCGAAGAGTTGCTGGGCAGCTGCAT
ATTAACCTTGCGGAATCACTCGACACCTGA
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Coding sequence (CDS) from alignment at tig00000062_pilon:601160..601939-

>Ggra7130.t1 ID=Ggra7130.t1|Name=Ggra7130.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=780bp|location=Sequence derived from alignment at tig00000062_pilon:601160..601939- (Gracilaria gracilis GNS1m male)
ATGTCCTCCGATCGCTTTTGTCTACCTTCGTTCTTTTCAACGCCCAAGTC
GCGCCCGAACGCGGTTCCAGGCTTCATTCTTCGAGAGGACGCATTCACCA
CGGAGGAGGAGGCGGCACTCATTCACGCAGTGGATACATCATCTGCACAG
TGGACCAGGCGTCGTACCAGGATTACCAAGAACTACGGGCCATACTATTT
TTACCATGAACGTAACACAGCTGAGGGTCGCTTTCGATACACGGATGGAA
AAATCATGCATACGCCCCTTCCGGACTTTCTTGAAACGCTCGTGATGCCC
ATTCTCACTAGAGAAGTACCGCAGCTTTCCGATTTTAAACCGAATCAGTT
GCATGTGGCATTGTACAAAAAGGAGGAGGATGCGAAGATCCACATGCACA
ACGACAACAAGATGGGTGAGCTAGGGCCATATATCGTTGGAATGTGTCTT
CTATCGGATTGCTACATGACGTTTCTGAGGCCAAAGGATAGCAAGAAACG
CGTCTTGCATCTACCAAGAAGATGTGTATACGTCATGACTGGGGAGAGCC
ATTACGAGTGGAGGCATGGAATTCTTAAAGGCCAAACATCTAGTGATAGA
GTGAGCTTTACGTTGCGAGAAGTGGGAAAGCTTGCAGTTGAAGACGGGGC
GCGAGTTAGAAAGAGTAGTCACGCACCAAGTGCGCAGAGCATCCGCGAGC
AGGCTGCGAAAGACGAAAAAGCGCATCGAAGAGTTGCTGGGCAGCTGCAT
ATTAACCTTGCGGAATCACTCGACACCTGA
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