Ggra7096.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7096.t1
Unique NameGgra7096.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length361
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000062_piloncontigtig00000062_pilon:468202..470918 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7096Ggra7096Gracilaria gracilis GNS1m malegenetig00000062_pilon 468202..470918 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7096.t1Ggra7096.t1Gracilaria gracilis GNS1m malepolypeptidetig00000062_pilon 468202..470918 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7096.t1.stop1Ggra7096.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000062_pilon 468202..468204 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7096.t1.CDS1Ggra7096.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000062_pilon 468202..468727 -
Ggra7096.t1.CDS2Ggra7096.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000062_pilon 468929..469268 -
Ggra7096.t1.CDS3Ggra7096.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000062_pilon 470702..470918 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7096.t1.exon1Ggra7096.t1.exon1Gracilaria gracilis GNS1m maleexontig00000062_pilon 468202..468727 -
Ggra7096.t1.exon2Ggra7096.t1.exon2Gracilaria gracilis GNS1m maleexontig00000062_pilon 468929..469268 -
Ggra7096.t1.exon3Ggra7096.t1.exon3Gracilaria gracilis GNS1m maleexontig00000062_pilon 470702..470918 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7096.t1.intron1Ggra7096.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000062_pilon 468728..468928 -
Ggra7096.t1.intron2Ggra7096.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000062_pilon 469269..470701 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7096.t1.start1Ggra7096.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000062_pilon 470916..470918 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7096.t1 ID=Ggra7096.t1|Name=Ggra7096.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=361bp
MPISVVSEIVRGNRQNQDRWKTTLKMAETIFGIRSNSTASYVSLSIYCKN
STFESIADFLSPKSYNLDYRINRAVPYEPSDMHGKENPPTMFDKKVWKLA
VLPLHELGERERDCALDALRWHMSVVDESNAWLMQALERLASSEPSKTAA
ACGYAHAINLILELLRTRPYPRLRPNTKSASMFDWPPVVTPRIIPHNKAN
WKLLKDFSRQYPHRFSNNGEMLPDIDKRTFYVDMELSSAEHLYADDTTKL
SGDTDAELLQEYGGAFDVYPKSPLIAESIPDPLLFMIGCGQLVDGNWQHK
FFLTDTLEKQGQPQVIIEWLQHVHAVTRTMKAPSLVQVRGPEKQLLSKAF
VACLSWWFMK*
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spliced messenger RNA

>Ggra7096.t1 ID=Ggra7096.t1|Name=Ggra7096.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1083bp|location=Sequence derived from alignment at tig00000062_pilon:468202..470918- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGATCAGTGTCGTTTCCGAGATTGTCCGCGGCAACCGTCAGAACCA
AGACCGATGGAAAACGACACTGAAAATGGCCGAGACTATTTTCGGCATTC
GTTCAAATTCAACCGCCTCATATGTGTCTCTATCCATTTATTGCAAGAAC
TCCACCTTTGAGTCAATTGCTGACTTTCTAAGCCCTAAATCATACAATCT
TGACTATCGAATAAACCGTGCCGTGCCGTATGAACCATCTGATATGCACG
GCAAGGAAAACCCGCCCACTATGTTTGACAAGAAGGTGTGGAAACTGGCG
GTGCTCCCGCTGCATGAGTTGGGCGAGCGCGAAAGAGACTGCGCGTTGGA
TGCATTGAGATGGCACATGTCCGTGGTGGATGAAAGCAACGCGTGGTTGA
TGCAGGCTCTCGAACGTTTGGCTTCAAGTGAGCCATCGAAGACGGCTGCT
GCCTGTGGATACGCGCATGCGATCAACCTGATTTTGGAGTTGCTTCGCAC
CAGGCCTTACCCACGTTTGAGACCTAATACGAAGAGCGCTTCCATGTTCG
ACTGGCCACCGGTTGTCACTCCAAGAATCATACCGCACAACAAGGCAAAC
TGGAAGCTTTTGAAAGACTTTAGTCGACAATATCCTCATCGTTTCAGTAA
TAATGGTGAGATGCTACCTGATATCGATAAAAGAACGTTTTACGTCGACA
TGGAGCTCTCCTCGGCAGAGCACTTGTACGCTGATGATACTACAAAACTA
TCGGGTGATACCGACGCGGAGCTGTTGCAAGAGTACGGCGGGGCGTTCGA
TGTTTATCCGAAGTCGCCTTTAATTGCTGAGAGCATCCCAGACCCGCTGT
TGTTTATGATAGGCTGCGGCCAGTTGGTAGATGGAAACTGGCAGCACAAA
TTTTTTCTGACTGACACCCTTGAGAAACAGGGTCAACCACAAGTAATCAT
AGAATGGTTGCAGCATGTACATGCAGTGACTCGTACTATGAAAGCACCTT
CTCTCGTGCAAGTGCGTGGTCCGGAGAAACAGTTGTTGAGCAAGGCTTTC
GTCGCATGCCTCAGCTGGTGGTTCATGAAATAG
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protein sequence of Ggra7096.t1

>Ggra7096.t1 ID=Ggra7096.t1|Name=Ggra7096.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=361bp
MPISVVSEIVRGNRQNQDRWKTTLKMAETIFGIRSNSTASYVSLSIYCKN
STFESIADFLSPKSYNLDYRINRAVPYEPSDMHGKENPPTMFDKKVWKLA
VLPLHELGERERDCALDALRWHMSVVDESNAWLMQALERLASSEPSKTAA
ACGYAHAINLILELLRTRPYPRLRPNTKSASMFDWPPVVTPRIIPHNKAN
WKLLKDFSRQYPHRFSNNGEMLPDIDKRTFYVDMELSSAEHLYADDTTKL
SGDTDAELLQEYGGAFDVYPKSPLIAESIPDPLLFMIGCGQLVDGNWQHK
FFLTDTLEKQGQPQVIIEWLQHVHAVTRTMKAPSLVQVRGPEKQLLSKAF
VACLSWWFMK*
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mRNA from alignment at tig00000062_pilon:468202..470918-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7096.t1 ID=Ggra7096.t1|Name=Ggra7096.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2717bp|location=Sequence derived from alignment at tig00000062_pilon:468202..470918- (Gracilaria gracilis GNS1m male)
ATGCCGATCAGTGTCGTTTCCGAGATTGTCCGCGGCAACCGTCAGAACCA
AGACCGATGGAAAACGACACTGAAAATGGCCGAGACTATTTTCGGCATTC
GTTCAAATTCAACCGCCTCATATGTGTCTCTATCCATTTATTGCAAGAAC
TCCACCTTTGAGTCAATTGCTGACTTTCTAAGCCCTAAATCATACAATCT
TGACTATCGAATAAACCGTAAGTATTTCTATAAACTTGAAAAACGCCTCG
ATCCACTTACACGAAGTGTTAAACTCTTTCAGTTTCTTTTTGTCTCGGAA
TAGCATTAAGTATGCTTGCCGGTAAAACTGTAGATACCATCCTTGAAATC
TTTTGTACGCAGGTATCTACGGTGTATCGAGTCTTTGACGAGAATGGTCA
AGCTCTTTCCGCAATTTTGCGCCTCCGTGGTGTACAGATGACGTTTCCGG
AACTAGAAAAGCTTTCGAACGGGTTTAAAATATCTATAACAAAGGCCAGT
CTATTCAGAGATGAATTGCAGCTATTCACGGCATCGCAATCCGTATAAAA
GCTCCAAAAATAAATGCAGTCAAATACTGGTGCCGCAAAAGGTTTGTATG
CACTGCCTGTGCAAGGCCTAGTAGATGCGACCGGAAGAATTCTTTTGTCT
CGGCCAAATGCGTTGGCTCTACGCACGATTCGGAAGCCTACGCGTCCTCT
AAACTTTCACTATTTCTAAGCAATAAGAACCTGCCAGTGGAATTTTCGAT
CGTCGGGGACGAAGCGTGTGTTTGCAATGGCAATCTAATTACTCCAATTG
CTGCTTCGCAGGTACGTCTCGACTTCGAGATGTCTTTCAACTACTTCATT
TCATCCTTTCGTGTGCATGTGGAGCAGGCATTTGGCCGTTTGGTTTCTCG
CTGGCGAATACTACAGAATCGCCTTAAATTTGGTGTCAATAAGAACGCCA
GCATTGTGCTGCTTTGTACGGAGCTGCAAAATTTTTGTATCGACGAAGGG
GAGGAGAAAATTCGTGAGTTTTCACTGTCTGAAGTTTTGGACATATACCG
TGTCGTGGACAAGTGATATCCAACCTGCAAAGAAACGCTTCGCATGATGT
ATACTACGGATGAAGAGTAACCGTCTCTGTTTTATGTGCGACGCTCTACA
CGCAAGCGCGACAAGCTGATGGAGCTCATACGTGTAAAAAAAACTACGCC
GTCCTGAAATCACAGGAGTACCGGTACCCTTCTAAGTCGTCAATTGATTG
CTTTCATGGGGGGACAGTGTCGACGATGAAGTGAAGATTTGAACTGCAGA
AACTGACAAGGCTTTTGATGTACTTCATGGTCAACGGTTTTTCTATTGTG
TTGCTGTCGGTGGTGGGGGTGGTGGTTGTGGTTATGGTGTCTGAATTCGG
AATGGGTATTGTAAGGTTGTGAGGTTTGATTACGATGTTGAGATATGGCG
ATACGGTTCTTCCGAGACGCAATTAAGGGCTTTGAAGCCACCTTCCGTCA
ATTTTAAGGGCAAAACATACGGAGAGAATATATATATATTGATCTCGTGC
ATATCCGCTATAATAAATGGTGCCATACAGCCGGTGTCCACTATTCTTTT
TGTTAGCACTATCGATGAATTCCAGATGGCTACAAGCGTGTTTGCCACAG
GTGCCGTGCCGTATGAACCATCTGATATGCACGGCAAGGAAAACCCGCCC
ACTATGTTTGACAAGAAGGTGTGGAAACTGGCGGTGCTCCCGCTGCATGA
GTTGGGCGAGCGCGAAAGAGACTGCGCGTTGGATGCATTGAGATGGCACA
TGTCCGTGGTGGATGAAAGCAACGCGTGGTTGATGCAGGCTCTCGAACGT
TTGGCTTCAAGTGAGCCATCGAAGACGGCTGCTGCCTGTGGATACGCGCA
TGCGATCAACCTGATTTTGGAGTTGCTTCGCACCAGGCCTTACCCACGTT
TGAGACCTAATACGAAGAGCGCTTCCATGTTCGACTGGCCGTAGGAGAAC
GCGAAGCAGCACGCACATAATTTGCGCGAGCTTAAGTTGGTGTCCGGCGT
CAGTAGAAGCGCCACTGAACAAGTGATGACAAAAGGCATTCCGAAGAATT
ATTCGCATTATCAGGTCACGGCGGAAGCGCTGGGTTAAAAATTGTTGTTT
ACGACGCAAAATCTGTCGAAGAGCAAGCCGATTTACAACAGACCGGTTGT
CACTCCAAGAATCATACCGCACAACAAGGCAAACTGGAAGCTTTTGAAAG
ACTTTAGTCGACAATATCCTCATCGTTTCAGTAATAATGGTGAGATGCTA
CCTGATATCGATAAAAGAACGTTTTACGTCGACATGGAGCTCTCCTCGGC
AGAGCACTTGTACGCTGATGATACTACAAAACTATCGGGTGATACCGACG
CGGAGCTGTTGCAAGAGTACGGCGGGGCGTTCGATGTTTATCCGAAGTCG
CCTTTAATTGCTGAGAGCATCCCAGACCCGCTGTTGTTTATGATAGGCTG
CGGCCAGTTGGTAGATGGAAACTGGCAGCACAAATTTTTTCTGACTGACA
CCCTTGAGAAACAGGGTCAACCACAAGTAATCATAGAATGGTTGCAGCAT
GTACATGCAGTGACTCGTACTATGAAAGCACCTTCTCTCGTGCAAGTGCG
TGGTCCGGAGAAACAGTTGTTGAGCAAGGCTTTCGTCGCATGCCTCAGCT
GGTGGTTCATGAAATAG
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Coding sequence (CDS) from alignment at tig00000062_pilon:468202..470918-

>Ggra7096.t1 ID=Ggra7096.t1|Name=Ggra7096.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1083bp|location=Sequence derived from alignment at tig00000062_pilon:468202..470918- (Gracilaria gracilis GNS1m male)
ATGCCGATCAGTGTCGTTTCCGAGATTGTCCGCGGCAACCGTCAGAACCA
AGACCGATGGAAAACGACACTGAAAATGGCCGAGACTATTTTCGGCATTC
GTTCAAATTCAACCGCCTCATATGTGTCTCTATCCATTTATTGCAAGAAC
TCCACCTTTGAGTCAATTGCTGACTTTCTAAGCCCTAAATCATACAATCT
TGACTATCGAATAAACCGTGCCGTGCCGTATGAACCATCTGATATGCACG
GCAAGGAAAACCCGCCCACTATGTTTGACAAGAAGGTGTGGAAACTGGCG
GTGCTCCCGCTGCATGAGTTGGGCGAGCGCGAAAGAGACTGCGCGTTGGA
TGCATTGAGATGGCACATGTCCGTGGTGGATGAAAGCAACGCGTGGTTGA
TGCAGGCTCTCGAACGTTTGGCTTCAAGTGAGCCATCGAAGACGGCTGCT
GCCTGTGGATACGCGCATGCGATCAACCTGATTTTGGAGTTGCTTCGCAC
CAGGCCTTACCCACGTTTGAGACCTAATACGAAGAGCGCTTCCATGTTCG
ACTGGCCACCGGTTGTCACTCCAAGAATCATACCGCACAACAAGGCAAAC
TGGAAGCTTTTGAAAGACTTTAGTCGACAATATCCTCATCGTTTCAGTAA
TAATGGTGAGATGCTACCTGATATCGATAAAAGAACGTTTTACGTCGACA
TGGAGCTCTCCTCGGCAGAGCACTTGTACGCTGATGATACTACAAAACTA
TCGGGTGATACCGACGCGGAGCTGTTGCAAGAGTACGGCGGGGCGTTCGA
TGTTTATCCGAAGTCGCCTTTAATTGCTGAGAGCATCCCAGACCCGCTGT
TGTTTATGATAGGCTGCGGCCAGTTGGTAGATGGAAACTGGCAGCACAAA
TTTTTTCTGACTGACACCCTTGAGAAACAGGGTCAACCACAAGTAATCAT
AGAATGGTTGCAGCATGTACATGCAGTGACTCGTACTATGAAAGCACCTT
CTCTCGTGCAAGTGCGTGGTCCGGAGAAACAGTTGTTGAGCAAGGCTTTC
GTCGCATGCCTCAGCTGGTGGTTCATGAAATAG
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