Ggra7041.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7041.t1
Unique Name	Ggra7041.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	728

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000062_pilon	contig	tig00000062_pilon:141005..143261 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708260.1
PFAMs	Methyltr_RsmB-F,zf-CCHC_2
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15334,ko:K15335
Evalue	4.96e-106
EggNOG OGs	COG0144@1\|root,KOG2198@2759\|Eukaryota
EC	2.1.1.202,2.1.1.203
Description	tRNA (cytosine-5-)-methyltransferase activity
COG category	J
BRITE	ko00000,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7041	Ggra7041	Gracilaria gracilis GNS1m male	gene	tig00000062_pilon 141005..143261 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7041.t1	Ggra7041.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000062_pilon 141005..143261 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7041.t1.start1	Ggra7041.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000062_pilon 141005..141007 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7041.t1.CDS1	Ggra7041.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000062_pilon 141005..141684 +
Ggra7041.t1.CDS2	Ggra7041.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000062_pilon 141758..143261 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7041.t1.exon1	Ggra7041.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000062_pilon 141005..141684 +
Ggra7041.t1.exon2	Ggra7041.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000062_pilon 141758..143261 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7041.t1.intron1	Ggra7041.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000062_pilon 141685..141757 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7041.t1.stop1	Ggra7041.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000062_pilon 143259..143261 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000062_pilon:141005..143261+
coding sequence from alignment at tig00000062_pilon:141005..143261+

mRNA sequence

>Ggra7041.t1 ID=Ggra7041.t1|Name=Ggra7041.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=728bp
MPSPEDQKTKPLELKKSLSRAPAMIDLPTKRRRKHWNPKTPRRDNRKSRY
DSDYTPDDGRNNEAFSEYYKMQNIVDQKEFESMLTTFAQPLPTSFRITAQ
GAFNKDIHAALVGDISALFRNAKSEDDSNQIKPPKPLLWYPEELAWTVSA
PRQLLRRDNALAPFHRFLVRMHALGAVNRQEAVSMIPPLLLDAQPGHAVL
DMCAAPGSKTAQTRTSFTKRHSPLRSRPHLVVTHHEAQHFPKFMAFDRVL
CDVPCTGDGTLRKAPDIWRRWSPEMGIGIHRLQRQILNRGVELLKPGGTL
VYSTCSMNPLENEAVVAHALRTFGPDLQLINCSQKLPELIRRPGLTTWLV
KDTAYAMKPEREDQKPTEESETKVDKERNADSTDMHPNPQRGWFTSFEEV
PPRRQKKVVSSLFPPSAEEVSSGRFPLQRCMRLVPHDQDTGAFFVAVLFK
SELARLTRRQLRNEENREQREQASAKDTSDVNHNETNGSEHTRDDIKVPL
PKRSGRGGTRLITDDPLVNVSDLCRKSLFNICSFFGLDIDIMDHCLMTRG
TDGTTFKRVVAVSRTVRTVLRHSLGTRDKEVMENRRELRVVNAGVRVLER
TDRKDTTCHFRLIQEGSHIMRAIMKNRCINADVSDVLRLLNENGIRRNSA
EILQDLFSLGSGSAMLCCGEREEAIIWIGKQIITVVMPKEIVTAMQSQLR
RILGEKPDLLSLERKHDEADAEKSVEE*

spliced messenger RNA

>Ggra7041.t1 ID=Ggra7041.t1|Name=Ggra7041.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2184bp|location=Sequence derived from alignment at tig00000062_pilon:141005..143261+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTCACCAGAGGACCAGAAGACCAAACCTCTGGAACTCAAGAAATC
ACTCTCACGGGCTCCTGCGATGATTGATCTACCAACGAAGAGACGGCGAA
AGCATTGGAACCCAAAGACACCGCGAAGAGATAACCGCAAATCCCGTTAT
GATTCCGATTACACCCCTGACGATGGCCGAAACAATGAGGCTTTTAGTGA
GTACTATAAAATGCAAAACATAGTTGACCAGAAGGAATTCGAATCTATGC
TCACAACCTTTGCTCAGCCACTTCCAACAAGCTTTCGTATAACAGCCCAA
GGAGCCTTTAACAAGGACATTCATGCCGCGCTCGTCGGAGATATCTCTGC
TCTGTTTAGAAATGCCAAATCTGAAGATGATTCGAATCAGATCAAACCAC
CAAAGCCGCTCCTCTGGTATCCAGAAGAACTGGCATGGACCGTTTCCGCC
CCTCGCCAGCTTCTACGACGAGACAATGCTTTGGCTCCCTTCCACCGCTT
CCTCGTCCGAATGCACGCCCTCGGGGCTGTAAACCGACAAGAGGCAGTGA
GTATGATCCCCCCGCTTTTGTTGGATGCTCAACCTGGACATGCTGTTTTG
GACATGTGCGCTGCTCCGGGCTCAAAAACTGCTCAAACTCGAACATCTTT
CACAAAGAGGCATTCCCCTCTCCGATCCCGCCCTCACCTTGTCGTTACAC
ATCATGAAGCTCAGCATTTTCCAAAGTTTATGGCCTTTGATCGAGTGCTC
TGTGACGTGCCTTGCACTGGAGACGGAACGTTGCGCAAGGCCCCAGATAT
TTGGAGAAGATGGAGCCCTGAGATGGGCATTGGCATCCACCGACTTCAGC
GACAAATTTTGAACAGAGGTGTGGAATTGTTGAAACCAGGCGGAACACTG
GTGTATTCGACGTGTAGTATGAATCCGCTTGAGAATGAAGCCGTAGTTGC
CCATGCGCTGCGAACGTTTGGCCCAGACCTCCAGCTTATTAATTGTTCTC
AGAAGTTGCCTGAGCTAATTCGTCGTCCAGGTCTTACGACATGGCTTGTG
AAAGACACAGCATACGCAATGAAGCCTGAGCGAGAGGATCAAAAGCCTAC
TGAAGAAAGCGAAACAAAGGTTGACAAAGAGAGAAATGCAGATAGTACTG
ATATGCATCCTAATCCTCAAAGAGGGTGGTTTACCTCATTTGAAGAAGTT
CCACCACGTCGACAAAAGAAAGTTGTGAGCTCATTGTTCCCGCCATCCGC
TGAGGAAGTGTCAAGTGGGCGATTTCCTTTGCAAAGATGTATGCGACTAG
TTCCTCATGATCAAGACACAGGGGCGTTTTTTGTAGCGGTACTCTTTAAG
AGTGAGTTGGCACGCCTTACCCGGCGCCAACTCCGTAATGAAGAAAACCG
TGAGCAGAGAGAACAGGCAAGCGCCAAAGACACAAGCGATGTGAACCACA
ACGAAACCAATGGATCAGAACATACAAGAGATGATATCAAAGTTCCCCTG
CCAAAGAGAAGTGGCCGCGGTGGTACCAGGCTTATAACTGATGACCCACT
TGTGAACGTCTCCGATTTGTGTCGTAAAAGTCTCTTCAACATTTGCTCAT
TCTTTGGCTTGGATATCGACATCATGGATCATTGTCTCATGACGAGGGGT
ACTGACGGTACAACATTCAAGAGAGTTGTGGCCGTTTCTCGTACCGTTCG
AACGGTCCTCAGACATTCACTTGGCACTAGAGACAAAGAAGTGATGGAAA
ATAGACGAGAACTAAGAGTGGTGAACGCAGGTGTGCGCGTTTTGGAGCGA
ACTGATAGAAAGGACACTACGTGCCATTTCAGACTTATCCAGGAAGGTTC
TCATATTATGAGAGCTATAATGAAGAATAGATGCATCAATGCCGATGTTT
CTGACGTCCTAAGGCTACTGAATGAAAACGGCATTCGTCGCAACTCTGCT
GAAATCCTTCAAGACTTGTTCTCCCTTGGAAGCGGAAGTGCGATGCTCTG
TTGTGGGGAAAGGGAGGAAGCTATTATTTGGATTGGAAAGCAAATTATAA
CCGTCGTGATGCCGAAAGAAATTGTTACTGCCATGCAGTCGCAACTTCGA
CGGATACTCGGAGAAAAGCCCGATTTACTGTCATTAGAAAGAAAACATGA
TGAAGCGGATGCCGAGAAGAGTGTCGAAGAATGA

protein sequence of Ggra7041.t1

>Ggra7041.t1 ID=Ggra7041.t1|Name=Ggra7041.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=728bp
MPSPEDQKTKPLELKKSLSRAPAMIDLPTKRRRKHWNPKTPRRDNRKSRY
DSDYTPDDGRNNEAFSEYYKMQNIVDQKEFESMLTTFAQPLPTSFRITAQ
GAFNKDIHAALVGDISALFRNAKSEDDSNQIKPPKPLLWYPEELAWTVSA
PRQLLRRDNALAPFHRFLVRMHALGAVNRQEAVSMIPPLLLDAQPGHAVL
DMCAAPGSKTAQTRTSFTKRHSPLRSRPHLVVTHHEAQHFPKFMAFDRVL
CDVPCTGDGTLRKAPDIWRRWSPEMGIGIHRLQRQILNRGVELLKPGGTL
VYSTCSMNPLENEAVVAHALRTFGPDLQLINCSQKLPELIRRPGLTTWLV
KDTAYAMKPEREDQKPTEESETKVDKERNADSTDMHPNPQRGWFTSFEEV
PPRRQKKVVSSLFPPSAEEVSSGRFPLQRCMRLVPHDQDTGAFFVAVLFK
SELARLTRRQLRNEENREQREQASAKDTSDVNHNETNGSEHTRDDIKVPL
PKRSGRGGTRLITDDPLVNVSDLCRKSLFNICSFFGLDIDIMDHCLMTRG
TDGTTFKRVVAVSRTVRTVLRHSLGTRDKEVMENRRELRVVNAGVRVLER
TDRKDTTCHFRLIQEGSHIMRAIMKNRCINADVSDVLRLLNENGIRRNSA
EILQDLFSLGSGSAMLCCGEREEAIIWIGKQIITVVMPKEIVTAMQSQLR
RILGEKPDLLSLERKHDEADAEKSVEE*

mRNA from alignment at tig00000062_pilon:141005..143261+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7041.t1 ID=Ggra7041.t1|Name=Ggra7041.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2257bp|location=Sequence derived from alignment at tig00000062_pilon:141005..143261+ (Gracilaria gracilis GNS1m male)
ATGCCTTCACCAGAGGACCAGAAGACCAAACCTCTGGAACTCAAGAAATC
ACTCTCACGGGCTCCTGCGATGATTGATCTACCAACGAAGAGACGGCGAA
AGCATTGGAACCCAAAGACACCGCGAAGAGATAACCGCAAATCCCGTTAT
GATTCCGATTACACCCCTGACGATGGCCGAAACAATGAGGCTTTTAGTGA
GTACTATAAAATGCAAAACATAGTTGACCAGAAGGAATTCGAATCTATGC
TCACAACCTTTGCTCAGCCACTTCCAACAAGCTTTCGTATAACAGCCCAA
GGAGCCTTTAACAAGGACATTCATGCCGCGCTCGTCGGAGATATCTCTGC
TCTGTTTAGAAATGCCAAATCTGAAGATGATTCGAATCAGATCAAACCAC
CAAAGCCGCTCCTCTGGTATCCAGAAGAACTGGCATGGACCGTTTCCGCC
CCTCGCCAGCTTCTACGACGAGACAATGCTTTGGCTCCCTTCCACCGCTT
CCTCGTCCGAATGCACGCCCTCGGGGCTGTAAACCGACAAGAGGCAGTGA
GTATGATCCCCCCGCTTTTGTTGGATGCTCAACCTGGACATGCTGTTTTG
GACATGTGCGCTGCTCCGGGCTCAAAAACTGCTCAAACTCGAACATCTTT
CACAAAGAGGCATTCCCCTCTCCGATCCCGGTTTGGTGATAGCTAACGAC
GCCGACATCAAAAGGTGTTGGATGCTAGTTCATCAATTGAAACGATTTGC
CAGCCCTCACCTTGTCGTTACACATCATGAAGCTCAGCATTTTCCAAAGT
TTATGGCCTTTGATCGAGTGCTCTGTGACGTGCCTTGCACTGGAGACGGA
ACGTTGCGCAAGGCCCCAGATATTTGGAGAAGATGGAGCCCTGAGATGGG
CATTGGCATCCACCGACTTCAGCGACAAATTTTGAACAGAGGTGTGGAAT
TGTTGAAACCAGGCGGAACACTGGTGTATTCGACGTGTAGTATGAATCCG
CTTGAGAATGAAGCCGTAGTTGCCCATGCGCTGCGAACGTTTGGCCCAGA
CCTCCAGCTTATTAATTGTTCTCAGAAGTTGCCTGAGCTAATTCGTCGTC
CAGGTCTTACGACATGGCTTGTGAAAGACACAGCATACGCAATGAAGCCT
GAGCGAGAGGATCAAAAGCCTACTGAAGAAAGCGAAACAAAGGTTGACAA
AGAGAGAAATGCAGATAGTACTGATATGCATCCTAATCCTCAAAGAGGGT
GGTTTACCTCATTTGAAGAAGTTCCACCACGTCGACAAAAGAAAGTTGTG
AGCTCATTGTTCCCGCCATCCGCTGAGGAAGTGTCAAGTGGGCGATTTCC
TTTGCAAAGATGTATGCGACTAGTTCCTCATGATCAAGACACAGGGGCGT
TTTTTGTAGCGGTACTCTTTAAGAGTGAGTTGGCACGCCTTACCCGGCGC
CAACTCCGTAATGAAGAAAACCGTGAGCAGAGAGAACAGGCAAGCGCCAA
AGACACAAGCGATGTGAACCACAACGAAACCAATGGATCAGAACATACAA
GAGATGATATCAAAGTTCCCCTGCCAAAGAGAAGTGGCCGCGGTGGTACC
AGGCTTATAACTGATGACCCACTTGTGAACGTCTCCGATTTGTGTCGTAA
AAGTCTCTTCAACATTTGCTCATTCTTTGGCTTGGATATCGACATCATGG
ATCATTGTCTCATGACGAGGGGTACTGACGGTACAACATTCAAGAGAGTT
GTGGCCGTTTCTCGTACCGTTCGAACGGTCCTCAGACATTCACTTGGCAC
TAGAGACAAAGAAGTGATGGAAAATAGACGAGAACTAAGAGTGGTGAACG
CAGGTGTGCGCGTTTTGGAGCGAACTGATAGAAAGGACACTACGTGCCAT
TTCAGACTTATCCAGGAAGGTTCTCATATTATGAGAGCTATAATGAAGAA
TAGATGCATCAATGCCGATGTTTCTGACGTCCTAAGGCTACTGAATGAAA
ACGGCATTCGTCGCAACTCTGCTGAAATCCTTCAAGACTTGTTCTCCCTT
GGAAGCGGAAGTGCGATGCTCTGTTGTGGGGAAAGGGAGGAAGCTATTAT
TTGGATTGGAAAGCAAATTATAACCGTCGTGATGCCGAAAGAAATTGTTA
CTGCCATGCAGTCGCAACTTCGACGGATACTCGGAGAAAAGCCCGATTTA
CTGTCATTAGAAAGAAAACATGATGAAGCGGATGCCGAGAAGAGTGTCGA
AGAATGA

Coding sequence (CDS) from alignment at tig00000062_pilon:141005..143261+

>Ggra7041.t1 ID=Ggra7041.t1|Name=Ggra7041.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2184bp|location=Sequence derived from alignment at tig00000062_pilon:141005..143261+ (Gracilaria gracilis GNS1m male)
ATGCCTTCACCAGAGGACCAGAAGACCAAACCTCTGGAACTCAAGAAATC
ACTCTCACGGGCTCCTGCGATGATTGATCTACCAACGAAGAGACGGCGAA
AGCATTGGAACCCAAAGACACCGCGAAGAGATAACCGCAAATCCCGTTAT
GATTCCGATTACACCCCTGACGATGGCCGAAACAATGAGGCTTTTAGTGA
GTACTATAAAATGCAAAACATAGTTGACCAGAAGGAATTCGAATCTATGC
TCACAACCTTTGCTCAGCCACTTCCAACAAGCTTTCGTATAACAGCCCAA
GGAGCCTTTAACAAGGACATTCATGCCGCGCTCGTCGGAGATATCTCTGC
TCTGTTTAGAAATGCCAAATCTGAAGATGATTCGAATCAGATCAAACCAC
CAAAGCCGCTCCTCTGGTATCCAGAAGAACTGGCATGGACCGTTTCCGCC
CCTCGCCAGCTTCTACGACGAGACAATGCTTTGGCTCCCTTCCACCGCTT
CCTCGTCCGAATGCACGCCCTCGGGGCTGTAAACCGACAAGAGGCAGTGA
GTATGATCCCCCCGCTTTTGTTGGATGCTCAACCTGGACATGCTGTTTTG
GACATGTGCGCTGCTCCGGGCTCAAAAACTGCTCAAACTCGAACATCTTT
CACAAAGAGGCATTCCCCTCTCCGATCCCGCCCTCACCTTGTCGTTACAC
ATCATGAAGCTCAGCATTTTCCAAAGTTTATGGCCTTTGATCGAGTGCTC
TGTGACGTGCCTTGCACTGGAGACGGAACGTTGCGCAAGGCCCCAGATAT
TTGGAGAAGATGGAGCCCTGAGATGGGCATTGGCATCCACCGACTTCAGC
GACAAATTTTGAACAGAGGTGTGGAATTGTTGAAACCAGGCGGAACACTG
GTGTATTCGACGTGTAGTATGAATCCGCTTGAGAATGAAGCCGTAGTTGC
CCATGCGCTGCGAACGTTTGGCCCAGACCTCCAGCTTATTAATTGTTCTC
AGAAGTTGCCTGAGCTAATTCGTCGTCCAGGTCTTACGACATGGCTTGTG
AAAGACACAGCATACGCAATGAAGCCTGAGCGAGAGGATCAAAAGCCTAC
TGAAGAAAGCGAAACAAAGGTTGACAAAGAGAGAAATGCAGATAGTACTG
ATATGCATCCTAATCCTCAAAGAGGGTGGTTTACCTCATTTGAAGAAGTT
CCACCACGTCGACAAAAGAAAGTTGTGAGCTCATTGTTCCCGCCATCCGC
TGAGGAAGTGTCAAGTGGGCGATTTCCTTTGCAAAGATGTATGCGACTAG
TTCCTCATGATCAAGACACAGGGGCGTTTTTTGTAGCGGTACTCTTTAAG
AGTGAGTTGGCACGCCTTACCCGGCGCCAACTCCGTAATGAAGAAAACCG
TGAGCAGAGAGAACAGGCAAGCGCCAAAGACACAAGCGATGTGAACCACA
ACGAAACCAATGGATCAGAACATACAAGAGATGATATCAAAGTTCCCCTG
CCAAAGAGAAGTGGCCGCGGTGGTACCAGGCTTATAACTGATGACCCACT
TGTGAACGTCTCCGATTTGTGTCGTAAAAGTCTCTTCAACATTTGCTCAT
TCTTTGGCTTGGATATCGACATCATGGATCATTGTCTCATGACGAGGGGT
ACTGACGGTACAACATTCAAGAGAGTTGTGGCCGTTTCTCGTACCGTTCG
AACGGTCCTCAGACATTCACTTGGCACTAGAGACAAAGAAGTGATGGAAA
ATAGACGAGAACTAAGAGTGGTGAACGCAGGTGTGCGCGTTTTGGAGCGA
ACTGATAGAAAGGACACTACGTGCCATTTCAGACTTATCCAGGAAGGTTC
TCATATTATGAGAGCTATAATGAAGAATAGATGCATCAATGCCGATGTTT
CTGACGTCCTAAGGCTACTGAATGAAAACGGCATTCGTCGCAACTCTGCT
GAAATCCTTCAAGACTTGTTCTCCCTTGGAAGCGGAAGTGCGATGCTCTG
TTGTGGGGAAAGGGAGGAAGCTATTATTTGGATTGGAAAGCAAATTATAA
CCGTCGTGATGCCGAAAGAAATTGTTACTGCCATGCAGTCGCAACTTCGA
CGGATACTCGGAGAAAAGCCCGATTTACTGTCATTAGAAAGAAAACATGA
TGAAGCGGATGCCGAGAAGAGTGTCGAAGAATGA