Ggra7018.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7018.t1
Unique NameGgra7018.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length286
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000062_piloncontigtig00000062_pilon:71179..72036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1040989.AWZU01000001_gene5922
PFAMsCreatininase
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00615
KEGG koko:K01470
KEGG ReactionR01884
KEGG Pathwayko00330,map00330
Evalue4.19e-43
EggNOG OGsCOG1402@1|root,COG1402@2|Bacteria,1MXR9@1224|Proteobacteria,2TUFR@28211|Alphaproteobacteria,3JS6R@41294|Bradyrhizobiaceae
EC3.5.2.10
DescriptionCreatinine amidohydrolase
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7018Ggra7018Gracilaria gracilis GNS1m malegenetig00000062_pilon 71179..72036 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7018.t1.start1Ggra7018.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000062_pilon 71179..71181 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7018.t1.CDS1Ggra7018.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000062_pilon 71179..72036 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7018.t1.exon1Ggra7018.t1.exon1Gracilaria gracilis GNS1m maleexontig00000062_pilon 71179..72036 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7018.t1.stop1Ggra7018.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000062_pilon 72034..72036 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7018.t1Ggra7018.t1Gracilaria gracilis GNS1m malepolypeptidetig00000062_pilon 71179..72036 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7018.t1 ID=Ggra7018.t1|Name=Ggra7018.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=286bp
MFLPILFLLGVYGVRDAGECTRKTNQWEYMSSSDISRLQMAILPLGSTES
HGPHLPLGTDAILARELATKAAEGLPGVAILPLSSFGASFEHAGFPGTIA
IRDDILNSFWGDLTRSIVRSGVTKVLLVNGHGGQTNNVELVIRNARFEYS
VLAVSFNVQAMLAKAYGELVDANLSSDEILKGIHGGLIETSVLLHLHPEL
VRVDEMRDFRPKPNPYAYLEPHGTIVSYGWCMEDLSIDGAVGNAQASSPE
LGAQIFRRSVMELRGVIEDMTKSDLKELLVMKARS*
back to top

spliced messenger RNA

>Ggra7018.t1 ID=Ggra7018.t1|Name=Ggra7018.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00000062_pilon:71179..72036+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCTTCCTATTTTGTTTCTTTTGGGCGTGTATGGTGTACGTGATGC
TGGAGAATGTACGAGAAAAACGAATCAATGGGAATATATGTCAAGTTCCG
ATATCTCCAGATTACAAATGGCAATACTTCCCCTTGGCTCAACAGAATCA
CACGGTCCTCATCTCCCGCTTGGCACAGATGCCATTCTCGCTAGAGAATT
AGCGACTAAAGCCGCTGAGGGATTGCCGGGTGTTGCCATTTTACCGCTGA
GCTCCTTCGGGGCGAGCTTCGAGCATGCTGGGTTTCCTGGAACGATAGCC
ATTCGGGATGACATCCTCAACAGCTTTTGGGGTGATTTAACGAGGAGTAT
AGTTCGGTCAGGGGTGACGAAAGTGCTGCTTGTGAACGGTCACGGGGGAC
AGACTAACAACGTCGAGCTTGTTATTCGCAATGCTAGATTCGAGTACAGT
GTTCTTGCGGTCAGTTTCAATGTTCAAGCAATGCTAGCAAAGGCTTACGG
TGAGCTTGTTGACGCGAATCTGAGTTCGGATGAGATACTAAAGGGGATTC
ATGGAGGCTTGATTGAAACGTCTGTTCTGCTTCATCTCCATCCTGAATTA
GTTCGAGTTGATGAAATGCGTGACTTCAGACCCAAGCCAAACCCGTACGC
TTATCTTGAGCCACATGGGACCATCGTCTCGTACGGGTGGTGTATGGAAG
ATCTCAGTATCGATGGAGCGGTAGGAAATGCTCAGGCCTCGAGCCCCGAA
CTTGGTGCACAGATCTTCAGACGAAGCGTCATGGAATTGAGAGGAGTTAT
CGAAGACATGACCAAGAGTGATCTGAAGGAACTCTTAGTGATGAAAGCTC
GCAGTTAA
back to top

protein sequence of Ggra7018.t1

>Ggra7018.t1 ID=Ggra7018.t1|Name=Ggra7018.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=286bp
MFLPILFLLGVYGVRDAGECTRKTNQWEYMSSSDISRLQMAILPLGSTES
HGPHLPLGTDAILARELATKAAEGLPGVAILPLSSFGASFEHAGFPGTIA
IRDDILNSFWGDLTRSIVRSGVTKVLLVNGHGGQTNNVELVIRNARFEYS
VLAVSFNVQAMLAKAYGELVDANLSSDEILKGIHGGLIETSVLLHLHPEL
VRVDEMRDFRPKPNPYAYLEPHGTIVSYGWCMEDLSIDGAVGNAQASSPE
LGAQIFRRSVMELRGVIEDMTKSDLKELLVMKARS*
back to top

mRNA from alignment at tig00000062_pilon:71179..72036+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7018.t1 ID=Ggra7018.t1|Name=Ggra7018.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00000062_pilon:71179..72036+ (Gracilaria gracilis GNS1m male)
ATGTTCCTTCCTATTTTGTTTCTTTTGGGCGTGTATGGTGTACGTGATGC
TGGAGAATGTACGAGAAAAACGAATCAATGGGAATATATGTCAAGTTCCG
ATATCTCCAGATTACAAATGGCAATACTTCCCCTTGGCTCAACAGAATCA
CACGGTCCTCATCTCCCGCTTGGCACAGATGCCATTCTCGCTAGAGAATT
AGCGACTAAAGCCGCTGAGGGATTGCCGGGTGTTGCCATTTTACCGCTGA
GCTCCTTCGGGGCGAGCTTCGAGCATGCTGGGTTTCCTGGAACGATAGCC
ATTCGGGATGACATCCTCAACAGCTTTTGGGGTGATTTAACGAGGAGTAT
AGTTCGGTCAGGGGTGACGAAAGTGCTGCTTGTGAACGGTCACGGGGGAC
AGACTAACAACGTCGAGCTTGTTATTCGCAATGCTAGATTCGAGTACAGT
GTTCTTGCGGTCAGTTTCAATGTTCAAGCAATGCTAGCAAAGGCTTACGG
TGAGCTTGTTGACGCGAATCTGAGTTCGGATGAGATACTAAAGGGGATTC
ATGGAGGCTTGATTGAAACGTCTGTTCTGCTTCATCTCCATCCTGAATTA
GTTCGAGTTGATGAAATGCGTGACTTCAGACCCAAGCCAAACCCGTACGC
TTATCTTGAGCCACATGGGACCATCGTCTCGTACGGGTGGTGTATGGAAG
ATCTCAGTATCGATGGAGCGGTAGGAAATGCTCAGGCCTCGAGCCCCGAA
CTTGGTGCACAGATCTTCAGACGAAGCGTCATGGAATTGAGAGGAGTTAT
CGAAGACATGACCAAGAGTGATCTGAAGGAACTCTTAGTGATGAAAGCTC
GCAGTTAA
back to top

Coding sequence (CDS) from alignment at tig00000062_pilon:71179..72036+

>Ggra7018.t1 ID=Ggra7018.t1|Name=Ggra7018.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=858bp|location=Sequence derived from alignment at tig00000062_pilon:71179..72036+ (Gracilaria gracilis GNS1m male)
ATGTTCCTTCCTATTTTGTTTCTTTTGGGCGTGTATGGTGTACGTGATGC
TGGAGAATGTACGAGAAAAACGAATCAATGGGAATATATGTCAAGTTCCG
ATATCTCCAGATTACAAATGGCAATACTTCCCCTTGGCTCAACAGAATCA
CACGGTCCTCATCTCCCGCTTGGCACAGATGCCATTCTCGCTAGAGAATT
AGCGACTAAAGCCGCTGAGGGATTGCCGGGTGTTGCCATTTTACCGCTGA
GCTCCTTCGGGGCGAGCTTCGAGCATGCTGGGTTTCCTGGAACGATAGCC
ATTCGGGATGACATCCTCAACAGCTTTTGGGGTGATTTAACGAGGAGTAT
AGTTCGGTCAGGGGTGACGAAAGTGCTGCTTGTGAACGGTCACGGGGGAC
AGACTAACAACGTCGAGCTTGTTATTCGCAATGCTAGATTCGAGTACAGT
GTTCTTGCGGTCAGTTTCAATGTTCAAGCAATGCTAGCAAAGGCTTACGG
TGAGCTTGTTGACGCGAATCTGAGTTCGGATGAGATACTAAAGGGGATTC
ATGGAGGCTTGATTGAAACGTCTGTTCTGCTTCATCTCCATCCTGAATTA
GTTCGAGTTGATGAAATGCGTGACTTCAGACCCAAGCCAAACCCGTACGC
TTATCTTGAGCCACATGGGACCATCGTCTCGTACGGGTGGTGTATGGAAG
ATCTCAGTATCGATGGAGCGGTAGGAAATGCTCAGGCCTCGAGCCCCGAA
CTTGGTGCACAGATCTTCAGACGAAGCGTCATGGAATTGAGAGGAGTTAT
CGAAGACATGACCAAGAGTGATCTGAAGGAACTCTTAGTGATGAAAGCTC
GCAGTTAA
back to top