Ggra7017.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7017.t1
Unique NameGgra7017.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length302
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000062_piloncontigtig00000062_pilon:69459..70803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog197221.22294302
PFAMsABC_tran
Max annot lvl1117|Cyanobacteria
KEGG koko:K16786
KEGG TC3.A.1.25,3.A.1.28,3.A.1.29,3.A.1.30,3.A.1.31,3.A.1.32,3.A.1.33,3.A.1.35
KEGG Pathwayko02010,map02010
KEGG ModuleM00582
Evalue4.03e-43
EggNOG OGsCOG1122@1|root,COG1122@2|Bacteria,1G0FZ@1117|Cyanobacteria
DescriptionABC-type cobalt transport system ATPase component
COG categoryP
BRITEko00000,ko00001,ko00002,ko01000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7017Ggra7017Gracilaria gracilis GNS1m malegenetig00000062_pilon 69459..70803 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7017.t1Ggra7017.t1Gracilaria gracilis GNS1m malepolypeptidetig00000062_pilon 69459..70803 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7017.t1.start1Ggra7017.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000062_pilon 69459..69461 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7017.t1.CDS1Ggra7017.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000062_pilon 69459..69910 +
Ggra7017.t1.CDS2Ggra7017.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000062_pilon 70162..70209 +
Ggra7017.t1.CDS3Ggra7017.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000062_pilon 70287..70373 +
Ggra7017.t1.CDS4Ggra7017.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000062_pilon 70485..70803 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7017.t1.exon1Ggra7017.t1.exon1Gracilaria gracilis GNS1m maleexontig00000062_pilon 69459..69910 +
Ggra7017.t1.exon2Ggra7017.t1.exon2Gracilaria gracilis GNS1m maleexontig00000062_pilon 70162..70209 +
Ggra7017.t1.exon3Ggra7017.t1.exon3Gracilaria gracilis GNS1m maleexontig00000062_pilon 70287..70373 +
Ggra7017.t1.exon4Ggra7017.t1.exon4Gracilaria gracilis GNS1m maleexontig00000062_pilon 70485..70803 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7017.t1.intron1Ggra7017.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000062_pilon 69911..70161 +
Ggra7017.t1.intron2Ggra7017.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000062_pilon 70210..70286 +
Ggra7017.t1.intron3Ggra7017.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000062_pilon 70374..70484 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7017.t1.stop1Ggra7017.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000062_pilon 70801..70803 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7017.t1 ID=Ggra7017.t1|Name=Ggra7017.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=302bp
MILGHNGSGKSTLLRILRGLLNPSTGDVFLGKPCAYVQQDPNLQILLPTI
GTDIASSVPRNSETQPLEVRNAVMSALTAVGLTPPEEFFPKSSYRLSGGQ
RQRAAIAAALAMEPRTILFDEVTASMDPFNKAELVSRIRQIVTERHMAAI
WVTHLLDELEFADNIVIMTNGSVVAQGPRVAMMPLVFDLQDEIETSKAFN
FAAVANKVLSVSELGLRMKLKRSRILFMRTGTVPGYSLPSIAADAIKLRD
CVESGPMIGYQTMHTPLHVHMVEAINANLCFKEKKGFRIDSFDLIPRHGV
M*
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spliced messenger RNA

>Ggra7017.t1 ID=Ggra7017.t1|Name=Ggra7017.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=906bp|location=Sequence derived from alignment at tig00000062_pilon:69459..70803+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCCTTGGGCACAATGGCAGTGGAAAGAGTACTCTTCTTCGAATTCT
TCGCGGCCTTCTGAATCCGTCCACTGGAGATGTTTTTCTGGGAAAACCGT
GTGCCTATGTTCAACAGGACCCCAATTTGCAAATTCTACTACCCACTATC
GGAACCGATATTGCATCCTCCGTTCCGAGAAACTCGGAAACACAACCGTT
GGAGGTTCGCAACGCTGTGATGAGTGCCCTGACTGCAGTTGGTTTGACCC
CTCCAGAAGAGTTCTTCCCGAAGTCGTCTTATAGGTTAAGCGGTGGCCAA
CGCCAGCGCGCTGCCATCGCCGCTGCTCTTGCCATGGAGCCAAGAACTAT
TCTATTTGACGAAGTTACGGCAAGTATGGATCCTTTCAATAAGGCAGAGC
TGGTTTCAAGGATCCGACAAATCGTTACTGAACGCCATATGGCTGCAATA
TGGGTTACTCATTTGCTGGATGAGCTAGAGTTTGCTGATAACATAGTAAT
AATGACCAACGGCAGCGTAGTTGCGCAAGGACCGAGAGTCGCCATGATGC
CACTCGTCTTTGACTTGCAAGATGAAATAGAAACCTCAAAAGCATTCAAT
TTTGCTGCCGTGGCCAACAAGGTACTATCGGTAAGTGAACTTGGTCTGAG
AATGAAGTTGAAACGTAGCCGTATACTTTTCATGAGAACCGGGACTGTAC
CAGGGTATTCGCTTCCGAGCATCGCTGCTGATGCTATAAAGCTACGGGAT
TGTGTGGAGAGCGGACCCATGATTGGATACCAAACCATGCACACTCCATT
GCATGTGCACATGGTCGAAGCAATCAACGCAAATCTGTGCTTCAAAGAGA
AGAAAGGTTTTCGTATTGACAGTTTTGACCTTATCCCCAGGCACGGTGTG
ATGTAG
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protein sequence of Ggra7017.t1

>Ggra7017.t1 ID=Ggra7017.t1|Name=Ggra7017.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=302bp
MILGHNGSGKSTLLRILRGLLNPSTGDVFLGKPCAYVQQDPNLQILLPTI
GTDIASSVPRNSETQPLEVRNAVMSALTAVGLTPPEEFFPKSSYRLSGGQ
RQRAAIAAALAMEPRTILFDEVTASMDPFNKAELVSRIRQIVTERHMAAI
WVTHLLDELEFADNIVIMTNGSVVAQGPRVAMMPLVFDLQDEIETSKAFN
FAAVANKVLSVSELGLRMKLKRSRILFMRTGTVPGYSLPSIAADAIKLRD
CVESGPMIGYQTMHTPLHVHMVEAINANLCFKEKKGFRIDSFDLIPRHGV
M*
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mRNA from alignment at tig00000062_pilon:69459..70803+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7017.t1 ID=Ggra7017.t1|Name=Ggra7017.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1345bp|location=Sequence derived from alignment at tig00000062_pilon:69459..70803+ (Gracilaria gracilis GNS1m male)
ATGATCCTTGGGCACAATGGCAGTGGAAAGAGTACTCTTCTTCGAATTCT
TCGCGGCCTTCTGAATCCGTCCACTGGAGATGTTTTTCTGGGAAAACCGT
GTGCCTATGTTCAACAGGACCCCAATTTGCAAATTCTACTACCCACTATC
GGAACCGATATTGCATCCTCCGTTCCGAGAAACTCGGAAACACAACCGTT
GGAGGTTCGCAACGCTGTGATGAGTGCCCTGACTGCAGTTGGTTTGACCC
CTCCAGAAGAGTTCTTCCCGAAGTCGTCTTATAGGTTAAGCGGTGGCCAA
CGCCAGCGCGCTGCCATCGCCGCTGCTCTTGCCATGGAGCCAAGAACTAT
TCTATTTGACGAAGTTACGGCAAGTATGGATCCTTTCAATAAGGCAGAGC
TGGTTTCAAGGATCCGACAAATCGTTACTGAACGCCATATGGCTGCAATA
TGGTAAGTTTTGCGCTTATCATTGACACAAAGAAAGCATTCTTCGAAGGC
CGCCTAGGGAAACTCTGCGGATGCATTGGACACCTCTGGTTGTCGGCTCA
AAAGGAATGCGAAATCAATTTGTGACAGCTTTCGTGTTGCTGATCTTGTT
TACTCATAGCGGTTCAGTGTCAATTCACGCTTCACACATTACGTTTATCT
GACCAAAGCGATATACTGACGACAGAAAACTCACGCCTTTCTTTAAACTC
CAGGGTTACTCATTTGCTGGATGAGCTAGAGTTTGCTGATAACATAGTAA
TGTGGGTAACCTCGAACATTATTTGTCCCAAAACTGCATTGCTGACTTCC
ACACTCTTTCTTTCTTTTCCCCTTTCAGAATGACCAACGGCAGCGTAGTT
GCGCAAGGACCGAGAGTCGCCATGATGCCACTCGTCTTTGACTTGCAAGA
TGAAATAGAAACCTCGTCACTGTGATCAACTTGTTCGAATGTCATCCTAC
AATGACCTGCTGTTGAACTATTCTTTGATATCGAACCATTTCACATCTCA
CAAGTAATCTATTATGTCACAGTCAGAAAAGCATTCAATTTTGCTGCCGT
GGCCAACAAGGTACTATCGGTAAGTGAACTTGGTCTGAGAATGAAGTTGA
AACGTAGCCGTATACTTTTCATGAGAACCGGGACTGTACCAGGGTATTCG
CTTCCGAGCATCGCTGCTGATGCTATAAAGCTACGGGATTGTGTGGAGAG
CGGACCCATGATTGGATACCAAACCATGCACACTCCATTGCATGTGCACA
TGGTCGAAGCAATCAACGCAAATCTGTGCTTCAAAGAGAAGAAAGGTTTT
CGTATTGACAGTTTTGACCTTATCCCCAGGCACGGTGTGATGTAG
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Coding sequence (CDS) from alignment at tig00000062_pilon:69459..70803+

>Ggra7017.t1 ID=Ggra7017.t1|Name=Ggra7017.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=906bp|location=Sequence derived from alignment at tig00000062_pilon:69459..70803+ (Gracilaria gracilis GNS1m male)
ATGATCCTTGGGCACAATGGCAGTGGAAAGAGTACTCTTCTTCGAATTCT
TCGCGGCCTTCTGAATCCGTCCACTGGAGATGTTTTTCTGGGAAAACCGT
GTGCCTATGTTCAACAGGACCCCAATTTGCAAATTCTACTACCCACTATC
GGAACCGATATTGCATCCTCCGTTCCGAGAAACTCGGAAACACAACCGTT
GGAGGTTCGCAACGCTGTGATGAGTGCCCTGACTGCAGTTGGTTTGACCC
CTCCAGAAGAGTTCTTCCCGAAGTCGTCTTATAGGTTAAGCGGTGGCCAA
CGCCAGCGCGCTGCCATCGCCGCTGCTCTTGCCATGGAGCCAAGAACTAT
TCTATTTGACGAAGTTACGGCAAGTATGGATCCTTTCAATAAGGCAGAGC
TGGTTTCAAGGATCCGACAAATCGTTACTGAACGCCATATGGCTGCAATA
TGGGTTACTCATTTGCTGGATGAGCTAGAGTTTGCTGATAACATAGTAAT
AATGACCAACGGCAGCGTAGTTGCGCAAGGACCGAGAGTCGCCATGATGC
CACTCGTCTTTGACTTGCAAGATGAAATAGAAACCTCAAAAGCATTCAAT
TTTGCTGCCGTGGCCAACAAGGTACTATCGGTAAGTGAACTTGGTCTGAG
AATGAAGTTGAAACGTAGCCGTATACTTTTCATGAGAACCGGGACTGTAC
CAGGGTATTCGCTTCCGAGCATCGCTGCTGATGCTATAAAGCTACGGGAT
TGTGTGGAGAGCGGACCCATGATTGGATACCAAACCATGCACACTCCATT
GCATGTGCACATGGTCGAAGCAATCAACGCAAATCTGTGCTTCAAAGAGA
AGAAAGGTTTTCGTATTGACAGTTTTGACCTTATCCCCAGGCACGGTGTG
ATGTAG
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