Ggra7016.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7016.t1
Unique NameGgra7016.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length698
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000062_piloncontigtig00000062_pilon:62378..64680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7016Ggra7016Gracilaria gracilis GNS1m malegenetig00000062_pilon 62378..64680 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7016.t1Ggra7016.t1Gracilaria gracilis GNS1m malepolypeptidetig00000062_pilon 62378..64680 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7016.t1.stop1Ggra7016.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000062_pilon 62378..62380 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7016.t1.CDS1Ggra7016.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000062_pilon 62378..63685 -
Ggra7016.t1.CDS2Ggra7016.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000062_pilon 63895..64680 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7016.t1.exon1Ggra7016.t1.exon1Gracilaria gracilis GNS1m maleexontig00000062_pilon 62378..63685 -
Ggra7016.t1.exon2Ggra7016.t1.exon2Gracilaria gracilis GNS1m maleexontig00000062_pilon 63895..64680 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7016.t1.intron1Ggra7016.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000062_pilon 63686..63894 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7016.t1.start1Ggra7016.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000062_pilon 64678..64680 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7016.t1 ID=Ggra7016.t1|Name=Ggra7016.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=698bp
MLKNSADRCLVECILFALDESPFDGAYSRSQELLQMAVSLRSRVICPLAM
LPKSRFLPMSEVYALRKKLKLISSHPLKDDVTSKTGESRIGLVLAAKDVH
LYSLTRKLRCYATGAALCSTVQGVIYIASEDETRLFLNEKRRLLHDVCER
FFSKREDYRRGTGRLSEEIAAVPRVLWASLILDMASNRQLAFFKVAASER
RVSFSKLFPVCNEASELPSEELDNYSQRFRNNESAPKLHKTEFLLCLRAL
KVLEQIVFSRSRIDNFDIMPFHAVRAAAKASPMISGTATQSNVQTKRGRL
TSPNTAASQTESGKGNGDFRWKKLWEAPIRSSREGFISSFTSKKDDSVLK
DFSDLAFGVVYENKKQLMGTSSATARYKRGKFDHDYKHQGCNFRSLMLSC
FKPHGRLNSENPSLYNQDVLFVDVSRMRASDILTIYQKLALIFEVLKPVQ
PGHPHFIIVCGDQPTYRMLVKIWRQSYMEAKRGQQCIGEMFLEAKLHEWL
IPFPGFFHVEKQCLYPLCKKMLHGFGLEELAKCSGLSQSQVDNILQHSHA
RNNRAVLFNIGAALMIYTIDLVGAECPDLKDAIHKIQSESGSSDPSSKRK
LSSTLLRCASDRVTNKTIKIGRLCRERMSSFFDHSPNGKHIVGTVLHLCL
LPTLNFHVLSRTGHTDVLDSFWLRMNNVLHASGHLKYQELYIFYAYF*
back to top

spliced messenger RNA

>Ggra7016.t1 ID=Ggra7016.t1|Name=Ggra7016.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2094bp|location=Sequence derived from alignment at tig00000062_pilon:62378..64680- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAAGAACTCGGCGGATCGATGCCTCGTTGAATGCATACTATTCGC
TCTTGATGAGAGTCCATTTGATGGAGCATATAGTCGTTCTCAAGAGCTAC
TTCAAATGGCGGTTTCATTGAGAAGCAGGGTTATTTGCCCATTGGCAATG
CTACCGAAGTCACGATTTCTGCCTATGTCCGAGGTGTACGCGCTGCGAAA
AAAGCTGAAGCTAATAAGTTCGCATCCTTTGAAAGACGACGTTACCAGCA
AGACAGGTGAGTCCCGTATCGGCCTTGTATTGGCAGCTAAGGATGTGCAT
TTATACTCTCTGACACGTAAATTACGTTGTTACGCGACCGGAGCTGCGCT
TTGTTCCACTGTACAAGGTGTCATCTACATTGCGTCAGAAGATGAGACGC
GGCTCTTCCTGAACGAAAAGAGAAGGTTACTGCATGACGTTTGTGAGAGA
TTCTTCTCTAAGCGAGAGGATTATCGACGGGGAACGGGGAGGTTGTCGGA
AGAAATTGCTGCTGTTCCTCGAGTACTGTGGGCATCACTAATTCTCGACA
TGGCATCTAACCGTCAGCTTGCTTTCTTTAAGGTGGCTGCTTCAGAACGA
AGGGTTTCTTTCTCAAAACTGTTCCCAGTTTGCAATGAAGCGTCAGAGCT
TCCTTCTGAGGAGCTGGACAACTATTCTCAGAGGTTTCGCAATAACGAAT
CAGCCCCAAAGCTGCACAAAACGGAATTCTTACTTTGCCTGCGTGCTCTG
AAGGTGCTTGAGCAAATAGTGTTCTCCCGTTCTCGAATAGACAACTTTGA
CATCATGCCATTCCATGCAGTGAGGGCAGCAGCAAAGGCATCCCCAATGA
TCAGTGGTACTGCAACGCAGTCAAATGTGCAAACGAAAAGAGGACGACTT
ACATCACCAAATACAGCAGCATCTCAGACGGAAAGTGGGAAGGGAAACGG
GGACTTTCGCTGGAAGAAACTCTGGGAGGCGCCGATTCGGTCCAGCCGTG
AGGGGTTTATATCTTCATTCACTTCAAAGAAGGATGACAGCGTTTTAAAA
GACTTCAGCGACTTGGCTTTTGGTGTGGTTTATGAAAACAAAAAGCAGTT
GATGGGAACATCATCCGCAACAGCACGTTACAAGCGAGGGAAGTTTGATC
ACGACTACAAACACCAAGGATGTAACTTTCGCTCTCTGATGCTGTCATGT
TTCAAGCCTCATGGAAGACTCAATAGCGAGAATCCATCTTTGTACAATCA
GGATGTGTTGTTCGTTGACGTCAGCAGAATGAGAGCTTCTGATATCCTCA
CAATTTATCAGAAGCTGGCGCTGATATTCGAGGTGTTGAAACCGGTTCAA
CCAGGACATCCACATTTTATCATTGTATGCGGTGACCAACCGACATACCG
GATGCTGGTGAAGATATGGAGACAGTCTTATATGGAGGCCAAGAGAGGGC
AGCAATGTATTGGAGAGATGTTTCTTGAGGCGAAACTTCACGAGTGGCTA
ATTCCGTTCCCCGGCTTTTTTCATGTCGAAAAACAGTGCCTGTACCCTCT
TTGCAAGAAGATGCTGCATGGATTTGGCCTCGAAGAGCTGGCTAAGTGCT
CGGGACTCTCTCAGAGTCAGGTTGACAACATTCTTCAGCACAGCCACGCC
AGGAACAACCGGGCTGTACTCTTCAACATTGGTGCTGCTCTCATGATCTA
CACTATAGACCTTGTAGGAGCTGAATGCCCCGATTTGAAAGATGCCATCC
ATAAGATTCAGTCAGAATCTGGTTCGAGTGATCCATCCTCAAAGCGAAAG
CTCTCTTCTACACTACTCCGCTGCGCTTCTGACAGAGTGACGAACAAAAC
GATTAAGATTGGAAGACTGTGCCGTGAGCGTATGAGCTCGTTCTTTGACC
ACAGCCCGAACGGGAAGCATATTGTTGGGACTGTTCTTCATTTATGTTTG
TTGCCCACCTTGAACTTTCACGTCCTGTCACGTACTGGTCATACCGATGT
TCTCGACAGCTTTTGGTTGCGCATGAACAACGTGCTGCATGCTTCAGGTC
ACCTTAAATACCAGGAGTTGTATATCTTTTATGCCTACTTCTGA
back to top

protein sequence of Ggra7016.t1

>Ggra7016.t1 ID=Ggra7016.t1|Name=Ggra7016.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=698bp
MLKNSADRCLVECILFALDESPFDGAYSRSQELLQMAVSLRSRVICPLAM
LPKSRFLPMSEVYALRKKLKLISSHPLKDDVTSKTGESRIGLVLAAKDVH
LYSLTRKLRCYATGAALCSTVQGVIYIASEDETRLFLNEKRRLLHDVCER
FFSKREDYRRGTGRLSEEIAAVPRVLWASLILDMASNRQLAFFKVAASER
RVSFSKLFPVCNEASELPSEELDNYSQRFRNNESAPKLHKTEFLLCLRAL
KVLEQIVFSRSRIDNFDIMPFHAVRAAAKASPMISGTATQSNVQTKRGRL
TSPNTAASQTESGKGNGDFRWKKLWEAPIRSSREGFISSFTSKKDDSVLK
DFSDLAFGVVYENKKQLMGTSSATARYKRGKFDHDYKHQGCNFRSLMLSC
FKPHGRLNSENPSLYNQDVLFVDVSRMRASDILTIYQKLALIFEVLKPVQ
PGHPHFIIVCGDQPTYRMLVKIWRQSYMEAKRGQQCIGEMFLEAKLHEWL
IPFPGFFHVEKQCLYPLCKKMLHGFGLEELAKCSGLSQSQVDNILQHSHA
RNNRAVLFNIGAALMIYTIDLVGAECPDLKDAIHKIQSESGSSDPSSKRK
LSSTLLRCASDRVTNKTIKIGRLCRERMSSFFDHSPNGKHIVGTVLHLCL
LPTLNFHVLSRTGHTDVLDSFWLRMNNVLHASGHLKYQELYIFYAYF*
back to top

mRNA from alignment at tig00000062_pilon:62378..64680-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7016.t1 ID=Ggra7016.t1|Name=Ggra7016.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2303bp|location=Sequence derived from alignment at tig00000062_pilon:62378..64680- (Gracilaria gracilis GNS1m male)
ATGCTCAAGAACTCGGCGGATCGATGCCTCGTTGAATGCATACTATTCGC
TCTTGATGAGAGTCCATTTGATGGAGCATATAGTCGTTCTCAAGAGCTAC
TTCAAATGGCGGTTTCATTGAGAAGCAGGGTTATTTGCCCATTGGCAATG
CTACCGAAGTCACGATTTCTGCCTATGTCCGAGGTGTACGCGCTGCGAAA
AAAGCTGAAGCTAATAAGTTCGCATCCTTTGAAAGACGACGTTACCAGCA
AGACAGGTGAGTCCCGTATCGGCCTTGTATTGGCAGCTAAGGATGTGCAT
TTATACTCTCTGACACGTAAATTACGTTGTTACGCGACCGGAGCTGCGCT
TTGTTCCACTGTACAAGGTGTCATCTACATTGCGTCAGAAGATGAGACGC
GGCTCTTCCTGAACGAAAAGAGAAGGTTACTGCATGACGTTTGTGAGAGA
TTCTTCTCTAAGCGAGAGGATTATCGACGGGGAACGGGGAGGTTGTCGGA
AGAAATTGCTGCTGTTCCTCGAGTACTGTGGGCATCACTAATTCTCGACA
TGGCATCTAACCGTCAGCTTGCTTTCTTTAAGGTGGCTGCTTCAGAACGA
AGGGTTTCTTTCTCAAAACTGTTCCCAGTTTGCAATGAAGCGTCAGAGCT
TCCTTCTGAGGAGCTGGACAACTATTCTCAGAGGTTTCGCAATAACGAAT
CAGCCCCAAAGCTGCACAAAACGGAATTCTTACTTTGCCTGCGTGCTCTG
AAGGTGCTTGAGCAAATAGTGTTCTCCCGTTCTCGAGTAAGTTGTGGCCA
TTGCAGATGACTTTGTCAATTGCAGGCATCATGGAGTGTTCAGCATCGTG
GACAAGCGTACTTCATGCTTTGGGATTAGTGGCATCTTACGACACGACTG
AGAGTTATAGAACAGAGTTAATTGCTAAGCGGGAAAATGACAGTGAAGGG
CCTTTCAAAGATGTGGTCACAACTGACAGAGTTGTCACTTTTCAGATAGA
CAACTTTGACATCATGCCATTCCATGCAGTGAGGGCAGCAGCAAAGGCAT
CCCCAATGATCAGTGGTACTGCAACGCAGTCAAATGTGCAAACGAAAAGA
GGACGACTTACATCACCAAATACAGCAGCATCTCAGACGGAAAGTGGGAA
GGGAAACGGGGACTTTCGCTGGAAGAAACTCTGGGAGGCGCCGATTCGGT
CCAGCCGTGAGGGGTTTATATCTTCATTCACTTCAAAGAAGGATGACAGC
GTTTTAAAAGACTTCAGCGACTTGGCTTTTGGTGTGGTTTATGAAAACAA
AAAGCAGTTGATGGGAACATCATCCGCAACAGCACGTTACAAGCGAGGGA
AGTTTGATCACGACTACAAACACCAAGGATGTAACTTTCGCTCTCTGATG
CTGTCATGTTTCAAGCCTCATGGAAGACTCAATAGCGAGAATCCATCTTT
GTACAATCAGGATGTGTTGTTCGTTGACGTCAGCAGAATGAGAGCTTCTG
ATATCCTCACAATTTATCAGAAGCTGGCGCTGATATTCGAGGTGTTGAAA
CCGGTTCAACCAGGACATCCACATTTTATCATTGTATGCGGTGACCAACC
GACATACCGGATGCTGGTGAAGATATGGAGACAGTCTTATATGGAGGCCA
AGAGAGGGCAGCAATGTATTGGAGAGATGTTTCTTGAGGCGAAACTTCAC
GAGTGGCTAATTCCGTTCCCCGGCTTTTTTCATGTCGAAAAACAGTGCCT
GTACCCTCTTTGCAAGAAGATGCTGCATGGATTTGGCCTCGAAGAGCTGG
CTAAGTGCTCGGGACTCTCTCAGAGTCAGGTTGACAACATTCTTCAGCAC
AGCCACGCCAGGAACAACCGGGCTGTACTCTTCAACATTGGTGCTGCTCT
CATGATCTACACTATAGACCTTGTAGGAGCTGAATGCCCCGATTTGAAAG
ATGCCATCCATAAGATTCAGTCAGAATCTGGTTCGAGTGATCCATCCTCA
AAGCGAAAGCTCTCTTCTACACTACTCCGCTGCGCTTCTGACAGAGTGAC
GAACAAAACGATTAAGATTGGAAGACTGTGCCGTGAGCGTATGAGCTCGT
TCTTTGACCACAGCCCGAACGGGAAGCATATTGTTGGGACTGTTCTTCAT
TTATGTTTGTTGCCCACCTTGAACTTTCACGTCCTGTCACGTACTGGTCA
TACCGATGTTCTCGACAGCTTTTGGTTGCGCATGAACAACGTGCTGCATG
CTTCAGGTCACCTTAAATACCAGGAGTTGTATATCTTTTATGCCTACTTC
TGA
back to top

Coding sequence (CDS) from alignment at tig00000062_pilon:62378..64680-

>Ggra7016.t1 ID=Ggra7016.t1|Name=Ggra7016.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2094bp|location=Sequence derived from alignment at tig00000062_pilon:62378..64680- (Gracilaria gracilis GNS1m male)
ATGCTCAAGAACTCGGCGGATCGATGCCTCGTTGAATGCATACTATTCGC
TCTTGATGAGAGTCCATTTGATGGAGCATATAGTCGTTCTCAAGAGCTAC
TTCAAATGGCGGTTTCATTGAGAAGCAGGGTTATTTGCCCATTGGCAATG
CTACCGAAGTCACGATTTCTGCCTATGTCCGAGGTGTACGCGCTGCGAAA
AAAGCTGAAGCTAATAAGTTCGCATCCTTTGAAAGACGACGTTACCAGCA
AGACAGGTGAGTCCCGTATCGGCCTTGTATTGGCAGCTAAGGATGTGCAT
TTATACTCTCTGACACGTAAATTACGTTGTTACGCGACCGGAGCTGCGCT
TTGTTCCACTGTACAAGGTGTCATCTACATTGCGTCAGAAGATGAGACGC
GGCTCTTCCTGAACGAAAAGAGAAGGTTACTGCATGACGTTTGTGAGAGA
TTCTTCTCTAAGCGAGAGGATTATCGACGGGGAACGGGGAGGTTGTCGGA
AGAAATTGCTGCTGTTCCTCGAGTACTGTGGGCATCACTAATTCTCGACA
TGGCATCTAACCGTCAGCTTGCTTTCTTTAAGGTGGCTGCTTCAGAACGA
AGGGTTTCTTTCTCAAAACTGTTCCCAGTTTGCAATGAAGCGTCAGAGCT
TCCTTCTGAGGAGCTGGACAACTATTCTCAGAGGTTTCGCAATAACGAAT
CAGCCCCAAAGCTGCACAAAACGGAATTCTTACTTTGCCTGCGTGCTCTG
AAGGTGCTTGAGCAAATAGTGTTCTCCCGTTCTCGAATAGACAACTTTGA
CATCATGCCATTCCATGCAGTGAGGGCAGCAGCAAAGGCATCCCCAATGA
TCAGTGGTACTGCAACGCAGTCAAATGTGCAAACGAAAAGAGGACGACTT
ACATCACCAAATACAGCAGCATCTCAGACGGAAAGTGGGAAGGGAAACGG
GGACTTTCGCTGGAAGAAACTCTGGGAGGCGCCGATTCGGTCCAGCCGTG
AGGGGTTTATATCTTCATTCACTTCAAAGAAGGATGACAGCGTTTTAAAA
GACTTCAGCGACTTGGCTTTTGGTGTGGTTTATGAAAACAAAAAGCAGTT
GATGGGAACATCATCCGCAACAGCACGTTACAAGCGAGGGAAGTTTGATC
ACGACTACAAACACCAAGGATGTAACTTTCGCTCTCTGATGCTGTCATGT
TTCAAGCCTCATGGAAGACTCAATAGCGAGAATCCATCTTTGTACAATCA
GGATGTGTTGTTCGTTGACGTCAGCAGAATGAGAGCTTCTGATATCCTCA
CAATTTATCAGAAGCTGGCGCTGATATTCGAGGTGTTGAAACCGGTTCAA
CCAGGACATCCACATTTTATCATTGTATGCGGTGACCAACCGACATACCG
GATGCTGGTGAAGATATGGAGACAGTCTTATATGGAGGCCAAGAGAGGGC
AGCAATGTATTGGAGAGATGTTTCTTGAGGCGAAACTTCACGAGTGGCTA
ATTCCGTTCCCCGGCTTTTTTCATGTCGAAAAACAGTGCCTGTACCCTCT
TTGCAAGAAGATGCTGCATGGATTTGGCCTCGAAGAGCTGGCTAAGTGCT
CGGGACTCTCTCAGAGTCAGGTTGACAACATTCTTCAGCACAGCCACGCC
AGGAACAACCGGGCTGTACTCTTCAACATTGGTGCTGCTCTCATGATCTA
CACTATAGACCTTGTAGGAGCTGAATGCCCCGATTTGAAAGATGCCATCC
ATAAGATTCAGTCAGAATCTGGTTCGAGTGATCCATCCTCAAAGCGAAAG
CTCTCTTCTACACTACTCCGCTGCGCTTCTGACAGAGTGACGAACAAAAC
GATTAAGATTGGAAGACTGTGCCGTGAGCGTATGAGCTCGTTCTTTGACC
ACAGCCCGAACGGGAAGCATATTGTTGGGACTGTTCTTCATTTATGTTTG
TTGCCCACCTTGAACTTTCACGTCCTGTCACGTACTGGTCATACCGATGT
TCTCGACAGCTTTTGGTTGCGCATGAACAACGTGCTGCATGCTTCAGGTC
ACCTTAAATACCAGGAGTTGTATATCTTTTATGCCTACTTCTGA
back to top