Ggra7015.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7015.t1
Unique NameGgra7015.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length191
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000062_piloncontigtig00000062_pilon:55929..58011 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7015Ggra7015Gracilaria gracilis GNS1m malegenetig00000062_pilon 55929..58011 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7015.t1Ggra7015.t1Gracilaria gracilis GNS1m malepolypeptidetig00000062_pilon 55929..58011 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7015.t1.stop1Ggra7015.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000062_pilon 55929..55931 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7015.t1.CDS1Ggra7015.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000062_pilon 55929..56295 -
Ggra7015.t1.CDS2Ggra7015.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000062_pilon 57806..58011 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7015.t1.exon1Ggra7015.t1.exon1Gracilaria gracilis GNS1m maleexontig00000062_pilon 55929..56295 -
Ggra7015.t1.exon2Ggra7015.t1.exon2Gracilaria gracilis GNS1m maleexontig00000062_pilon 57806..58011 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7015.t1.intron1Ggra7015.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000062_pilon 56296..57805 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7015.t1.start1Ggra7015.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000062_pilon 58009..58011 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7015.t1 ID=Ggra7015.t1|Name=Ggra7015.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=191bp
MSRANGNAIHVRARQNSRYRFADSETYSDAEASSARVRDLHIYNLAATTL
HHFDNLRLGASSQRASIANSILKEGRKRPIGFKAAKALKKARQEAEGDDD
GIKNALESWTNGFAEASSASIDAANARANIDDQNSNREYELRKGAAELEA
VRILFNDDDIDSRKYRKILKKKRLRKILNEKPDSDLEESI*
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spliced messenger RNA

>Ggra7015.t1 ID=Ggra7015.t1|Name=Ggra7015.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=573bp|location=Sequence derived from alignment at tig00000062_pilon:55929..58011- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCGGGCTAACGGTAACGCTATCCATGTTCGTGCGCGCCAAAACTC
TCGCTATAGATTTGCGGATAGCGAGACCTATAGCGACGCCGAAGCCTCTT
CCGCTCGTGTTCGCGACTTGCACATTTATAACCTTGCTGCTACTACGCTT
CACCACTTCGACAATCTCCGTTTGGGTGCAAGTTCTCAAAGAGCTTCAAT
AGCAAATTCTATTCTAAAGGAAGGAAGAAAGAGACCAATTGGATTCAAAG
CAGCTAAGGCTCTAAAAAAGGCTCGGCAAGAAGCAGAAGGAGACGACGAC
GGGATCAAAAACGCTCTAGAGTCTTGGACGAATGGCTTCGCAGAGGCAAG
CAGCGCTTCTATTGACGCCGCCAATGCACGCGCAAATATCGACGACCAGA
ATTCAAATAGGGAATACGAGCTCCGCAAGGGGGCAGCGGAACTCGAAGCT
GTTCGCATTCTCTTTAATGATGATGACATCGATAGCAGGAAGTACCGCAA
GATTCTGAAGAAAAAGCGTCTCCGAAAGATCCTTAACGAAAAGCCAGACT
CTGACCTTGAGGAAAGCATTTAA
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protein sequence of Ggra7015.t1

>Ggra7015.t1 ID=Ggra7015.t1|Name=Ggra7015.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=191bp
MSRANGNAIHVRARQNSRYRFADSETYSDAEASSARVRDLHIYNLAATTL
HHFDNLRLGASSQRASIANSILKEGRKRPIGFKAAKALKKARQEAEGDDD
GIKNALESWTNGFAEASSASIDAANARANIDDQNSNREYELRKGAAELEA
VRILFNDDDIDSRKYRKILKKKRLRKILNEKPDSDLEESI*
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mRNA from alignment at tig00000062_pilon:55929..58011-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7015.t1 ID=Ggra7015.t1|Name=Ggra7015.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2083bp|location=Sequence derived from alignment at tig00000062_pilon:55929..58011- (Gracilaria gracilis GNS1m male)
ATGTCTCGGGCTAACGGTAACGCTATCCATGTTCGTGCGCGCCAAAACTC
TCGCTATAGATTTGCGGATAGCGAGACCTATAGCGACGCCGAAGCCTCTT
CCGCTCGTGTTCGCGACTTGCACATTTATAACCTTGCTGCTACTACGCTT
CACCACTTCGACAATCTCCGTTTGGGTGCAAGTTCTCAAAGAGCTTCAAT
AGCAAAGTGTGTTCAAAGAACAATATCGTTGATCGTGTTAAACGCCAAGG
AGCGCTTGACGTATGCTTTTGTCTCGAGTGCTTCACGATAAATAGTGTTG
CCCACACCAAATAACTTTTAACGCATGCTGTTGTCAAAAAGGTTTGAAGA
CGAATACTGTAACGCATGGCAAAAGAGAATCAAAAAACGCTTTCTTCAGC
GTTGCCGACGACGGATATTGTTTCGCACGGCTAGATGGGTTTTATAGAGC
GATAAAAGAGGTGAATTCTGCCTCGTCTTTGTCTTGTCCCTATTGAGAGG
TTCTCGCTTTCAAGCCATACTACTGAAGACTCTCCTCAAATCTTGACAAG
CCACAAAATCTGCCGGGATTCTAAATTGTACGAACGTTTGATCCTTGTCT
TGTTTTTACTATCTGGCGGTACACATTGGCACAAGAACTTGACCGCTTCT
GCGCTCCCTCCAATTCATTGGAAACATATTGAAATACGGAAGTTTCATAA
CGGCTTTTGCAGCGTGGTATAGTATACATTGCATTGGGTTCCAGTCCTGC
CAGCAATTTCTCATAATCAGTGACTGCAGATTCTGGTATCGCACAGTAGA
GCGTCTATAGGAATACCTTTGTACGATTCAGGGTCTTTGTCCACGTAGAA
CATACGAAGGAAACCCCAACAGAAAACGTACTGCGCAGGAGAGCAGGAAC
GCAACAGGTACGTTGAACAACACTAATAGTTACTTTGTTTTCCAATATTG
GTATATACTCACAATTATTTCATCAAACTTGTGCGTAACGACAAACGATA
GCAACTTCATTGTGCAGAACGGGCGCAGTACTGGGACAATGGACTCAGCT
CGTCTTCTGACTGTGTCTCCTCCAAAATCGTTGAAAGGGAAACAGCCACT
ATGGAGAGATCTCGACTCTATGGCAGTCGTAATGGCTACAGTTCGGCTTC
CCGATGCCTCCATCAATGGGTCAAAACAAAAGCGCACGGACTGGCACAAC
CAACTGAAGAAAGAATTTGATCGGCTTTACGAAGTTCTAACGCCAAAGTT
CTCAGAACTGAACGACGTTCAAAAACAAAACACATGTAAGAGTCGCTCGG
GAAGGAGTGTTGCGGAACAAGGAACAAAATGTTTGGCCGCCTGTCGGAAG
CTCAAGTGTTGCGTTCGAATATTTGAAAGTAGCAAAGTAACAGGGAATCC
AACAGATAATGAGAAGTTTCGCTGTTCTATAGCGCTCTATAATAACGTTA
TCAAAATGTCCGACTTCTATGATTTGTTACGAAATCCGAACTACGTCACT
GGAAAGCCCTTTCCCTACATGCATGCCTCTGAATGGCTAGATCAGACCAC
TGATGAACTTGACCCAACGCTTGAAGTTAGTGAAGGGAACACCAAGGATA
ACAGAGCTGATGATGTCCTAGGAATGGATGGGAGTGTAGACAACGGGGGG
GGCAGAAAACCGTACAGTAACCGGTGAGGATATTGCTACCGATACTGTGT
CGGCTGTAAAAGGAAGTTCTATTCTAAAGGAAGGAAGAAAGAGACCAATT
GGATTCAAAGCAGCTAAGGCTCTAAAAAAGGCTCGGCAAGAAGCAGAAGG
AGACGACGACGGGATCAAAAACGCTCTAGAGTCTTGGACGAATGGCTTCG
CAGAGGCAAGCAGCGCTTCTATTGACGCCGCCAATGCACGCGCAAATATC
GACGACCAGAATTCAAATAGGGAATACGAGCTCCGCAAGGGGGCAGCGGA
ACTCGAAGCTGTTCGCATTCTCTTTAATGATGATGACATCGATAGCAGGA
AGTACCGCAAGATTCTGAAGAAAAAGCGTCTCCGAAAGATCCTTAACGAA
AAGCCAGACTCTGACCTTGAGGAAAGCATTTAA
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Coding sequence (CDS) from alignment at tig00000062_pilon:55929..58011-

>Ggra7015.t1 ID=Ggra7015.t1|Name=Ggra7015.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=573bp|location=Sequence derived from alignment at tig00000062_pilon:55929..58011- (Gracilaria gracilis GNS1m male)
ATGTCTCGGGCTAACGGTAACGCTATCCATGTTCGTGCGCGCCAAAACTC
TCGCTATAGATTTGCGGATAGCGAGACCTATAGCGACGCCGAAGCCTCTT
CCGCTCGTGTTCGCGACTTGCACATTTATAACCTTGCTGCTACTACGCTT
CACCACTTCGACAATCTCCGTTTGGGTGCAAGTTCTCAAAGAGCTTCAAT
AGCAAATTCTATTCTAAAGGAAGGAAGAAAGAGACCAATTGGATTCAAAG
CAGCTAAGGCTCTAAAAAAGGCTCGGCAAGAAGCAGAAGGAGACGACGAC
GGGATCAAAAACGCTCTAGAGTCTTGGACGAATGGCTTCGCAGAGGCAAG
CAGCGCTTCTATTGACGCCGCCAATGCACGCGCAAATATCGACGACCAGA
ATTCAAATAGGGAATACGAGCTCCGCAAGGGGGCAGCGGAACTCGAAGCT
GTTCGCATTCTCTTTAATGATGATGACATCGATAGCAGGAAGTACCGCAA
GATTCTGAAGAAAAAGCGTCTCCGAAAGATCCTTAACGAAAAGCCAGACT
CTGACCTTGAGGAAAGCATTTAA
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