Ggra7014.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7014.t1
Unique NameGgra7014.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length222
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000211_piloncontigtig00000211_pilon:231732..232397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1236902.ANAS01000031_gene2867
Preferred namelpqD
PFAMsHis_Phos_1
Max annot lvl2|Bacteria
KEGG rclassRC00536
KEGG koko:K01834
KEGG ReactionR01518
KEGG Pathwayko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230
KEGG ModuleM00001,M00002,M00003
GOsGO:0000287,GO:0001666,GO:0003674,GO:0003824,GO:0004619,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009628,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0030312,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0036293,GO:0042866,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046872,GO:0046939,GO:0050896,GO:0051186,GO:0051188,GO:0055086,GO:0070482,GO:0071704,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576
Evalue1.88e-25
EggNOG OGsCOG0406@1|root,COG0406@2|Bacteria
EC5.4.2.11
Descriptionalpha-ribazole phosphatase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7014Ggra7014Gracilaria gracilis GNS1m malegenetig00000211_pilon 231732..232397 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7014.t1.stop1Ggra7014.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000211_pilon 231732..231734 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7014.t1.CDS1Ggra7014.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000211_pilon 231732..232397 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7014.t1.exon1Ggra7014.t1.exon1Gracilaria gracilis GNS1m maleexontig00000211_pilon 231732..232397 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7014.t1.start1Ggra7014.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000211_pilon 232395..232397 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7014.t1Ggra7014.t1Gracilaria gracilis GNS1m malepolypeptidetig00000211_pilon 231732..232397 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7014.t1 ID=Ggra7014.t1|Name=Ggra7014.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=222bp
MDRYCLESETGKKIPVKTVYFVRHGQSLHNAHALKAQGADLNDIRYVDSP
LTALGHHQAISLADEVARLKPELIVTSPMTRATETCLDACRLLTGVPVVV
NQLCRERLAYICDVGTPAPELEQRFPGLDYSSVEPDCWWWSIPGTIPSVE
NSVNALRKHPPGAYIDVEPVELLRKRINDFRRWLLMRSESRIIVFSHGVF
LMRFIGDNKRFSNGEMRKVVF*
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spliced messenger RNA

>Ggra7014.t1 ID=Ggra7014.t1|Name=Ggra7014.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=666bp|location=Sequence derived from alignment at tig00000211_pilon:231732..232397- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATAGGTATTGTCTTGAATCGGAAACAGGGAAGAAGATACCAGTTAA
GACTGTATACTTTGTTCGTCACGGCCAGTCCCTCCACAACGCTCATGCAT
TGAAGGCCCAAGGTGCGGATCTCAACGACATCCGCTATGTTGACTCTCCA
CTTACTGCTCTGGGTCACCACCAAGCGATTTCTCTTGCTGACGAGGTCGC
GCGCTTGAAACCCGAACTCATAGTTACATCTCCGATGACTAGAGCGACAG
AAACTTGTCTAGATGCCTGCCGTTTACTAACAGGCGTCCCCGTTGTTGTA
AATCAACTATGCAGAGAGCGATTGGCATACATCTGCGACGTTGGTACCCC
TGCACCAGAACTAGAGCAAAGATTTCCCGGTTTGGATTACAGTAGTGTTG
AACCTGATTGCTGGTGGTGGAGCATACCAGGTACCATCCCTAGCGTGGAG
AACAGTGTGAATGCCTTACGGAAGCATCCTCCTGGGGCTTATATAGACGT
CGAACCCGTTGAGCTACTGCGTAAACGCATCAATGACTTTAGAAGATGGC
TGCTCATGCGCTCTGAGTCAAGAATTATTGTGTTTTCTCATGGGGTGTTC
CTCATGAGGTTCATCGGAGACAACAAGAGATTCTCAAACGGCGAAATGAG
AAAGGTGGTTTTCTGA
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protein sequence of Ggra7014.t1

>Ggra7014.t1 ID=Ggra7014.t1|Name=Ggra7014.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=222bp
MDRYCLESETGKKIPVKTVYFVRHGQSLHNAHALKAQGADLNDIRYVDSP
LTALGHHQAISLADEVARLKPELIVTSPMTRATETCLDACRLLTGVPVVV
NQLCRERLAYICDVGTPAPELEQRFPGLDYSSVEPDCWWWSIPGTIPSVE
NSVNALRKHPPGAYIDVEPVELLRKRINDFRRWLLMRSESRIIVFSHGVF
LMRFIGDNKRFSNGEMRKVVF*
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mRNA from alignment at tig00000211_pilon:231732..232397-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7014.t1 ID=Ggra7014.t1|Name=Ggra7014.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=666bp|location=Sequence derived from alignment at tig00000211_pilon:231732..232397- (Gracilaria gracilis GNS1m male)
ATGGATAGGTATTGTCTTGAATCGGAAACAGGGAAGAAGATACCAGTTAA
GACTGTATACTTTGTTCGTCACGGCCAGTCCCTCCACAACGCTCATGCAT
TGAAGGCCCAAGGTGCGGATCTCAACGACATCCGCTATGTTGACTCTCCA
CTTACTGCTCTGGGTCACCACCAAGCGATTTCTCTTGCTGACGAGGTCGC
GCGCTTGAAACCCGAACTCATAGTTACATCTCCGATGACTAGAGCGACAG
AAACTTGTCTAGATGCCTGCCGTTTACTAACAGGCGTCCCCGTTGTTGTA
AATCAACTATGCAGAGAGCGATTGGCATACATCTGCGACGTTGGTACCCC
TGCACCAGAACTAGAGCAAAGATTTCCCGGTTTGGATTACAGTAGTGTTG
AACCTGATTGCTGGTGGTGGAGCATACCAGGTACCATCCCTAGCGTGGAG
AACAGTGTGAATGCCTTACGGAAGCATCCTCCTGGGGCTTATATAGACGT
CGAACCCGTTGAGCTACTGCGTAAACGCATCAATGACTTTAGAAGATGGC
TGCTCATGCGCTCTGAGTCAAGAATTATTGTGTTTTCTCATGGGGTGTTC
CTCATGAGGTTCATCGGAGACAACAAGAGATTCTCAAACGGCGAAATGAG
AAAGGTGGTTTTCTGA
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Coding sequence (CDS) from alignment at tig00000211_pilon:231732..232397-

>Ggra7014.t1 ID=Ggra7014.t1|Name=Ggra7014.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=666bp|location=Sequence derived from alignment at tig00000211_pilon:231732..232397- (Gracilaria gracilis GNS1m male)
ATGGATAGGTATTGTCTTGAATCGGAAACAGGGAAGAAGATACCAGTTAA
GACTGTATACTTTGTTCGTCACGGCCAGTCCCTCCACAACGCTCATGCAT
TGAAGGCCCAAGGTGCGGATCTCAACGACATCCGCTATGTTGACTCTCCA
CTTACTGCTCTGGGTCACCACCAAGCGATTTCTCTTGCTGACGAGGTCGC
GCGCTTGAAACCCGAACTCATAGTTACATCTCCGATGACTAGAGCGACAG
AAACTTGTCTAGATGCCTGCCGTTTACTAACAGGCGTCCCCGTTGTTGTA
AATCAACTATGCAGAGAGCGATTGGCATACATCTGCGACGTTGGTACCCC
TGCACCAGAACTAGAGCAAAGATTTCCCGGTTTGGATTACAGTAGTGTTG
AACCTGATTGCTGGTGGTGGAGCATACCAGGTACCATCCCTAGCGTGGAG
AACAGTGTGAATGCCTTACGGAAGCATCCTCCTGGGGCTTATATAGACGT
CGAACCCGTTGAGCTACTGCGTAAACGCATCAATGACTTTAGAAGATGGC
TGCTCATGCGCTCTGAGTCAAGAATTATTGTGTTTTCTCATGGGGTGTTC
CTCATGAGGTTCATCGGAGACAACAAGAGATTCTCAAACGGCGAAATGAG
AAAGGTGGTTTTCTGA
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