Ggra7012.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7012.t1
Unique Name	Ggra7012.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	409

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000211_pilon	contig	tig00000211_pilon:225957..227183 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7012	Ggra7012	Gracilaria gracilis GNS1m male	gene	tig00000211_pilon 225957..227183 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7012.t1.start1	Ggra7012.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000211_pilon 225957..225959 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7012.t1.CDS1	Ggra7012.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000211_pilon 225957..227183 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7012.t1.exon1	Ggra7012.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000211_pilon 225957..227183 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7012.t1.stop1	Ggra7012.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000211_pilon 227181..227183 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7012.t1	Ggra7012.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000211_pilon 225957..227183 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000211_pilon:225957..227183+
coding sequence from alignment at tig00000211_pilon:225957..227183+

mRNA sequence

>Ggra7012.t1 ID=Ggra7012.t1|Name=Ggra7012.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=409bp
MFHKENKHAAQQIVDSLRDALSSSSADLNELRTSLDKNAVGTASDAIAVA
KKTTLEVEQLRKQVSPLCTLMRQTPRAAELMTAVYKELESIEQVFSRFQE
FAHDKYGVEPVCVRDGDAASEAVLESPSAQVDEVGDVSNMGGGRGGGASR
SFLKSFTPASKKVPQGSSIPVTPRLEDFGLRDEEIRALATSTPGTNDKEN
HGFVGISNKYSTSISRNAGIEIDEDEYETMVLNSMSALGIETPKQLEQRF
ATKRNVALKEVLQTTTPKVKAGSSERTLDYTNLANGYFESSTKNVVGERL
HRTLNFGETPVAKGGALYDMASCYDELDSFWKSTFHLSTIQDVCVALGGM
GQDEFSKGDFLHMLGEFVEPHQCETLAVVLTKLKVLSVHKVHGNRPVYRF
LAAQPFSK*

spliced messenger RNA

>Ggra7012.t1 ID=Ggra7012.t1|Name=Ggra7012.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1227bp|location=Sequence derived from alignment at tig00000211_pilon:225957..227183+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCACAAGGAAAACAAGCATGCCGCGCAACAAATCGTAGACAGCCT
GCGCGATGCGCTGAGCAGCAGCAGCGCGGACCTCAACGAGCTGCGCACCT
CGTTGGACAAAAACGCCGTCGGCACCGCGTCCGATGCGATTGCCGTCGCG
AAGAAAACCACGCTTGAAGTGGAGCAGCTCCGCAAACAAGTGTCGCCACT
ATGCACTCTCATGCGACAAACGCCGCGCGCGGCGGAGCTTATGACGGCGG
TGTACAAGGAGCTGGAAAGCATTGAGCAAGTGTTTTCTCGCTTCCAAGAG
TTTGCGCACGACAAGTACGGTGTTGAACCGGTGTGCGTGCGCGACGGCGA
CGCTGCGAGCGAGGCGGTGTTGGAGTCACCGTCTGCGCAGGTAGATGAGG
TTGGTGATGTGTCCAACATGGGCGGTGGCAGAGGAGGTGGCGCAAGTAGG
AGCTTTCTCAAGTCGTTCACGCCGGCCTCGAAGAAGGTTCCGCAGGGATC
GAGCATCCCTGTGACGCCGCGGCTGGAGGACTTTGGGCTGCGGGACGAGG
AGATTCGCGCGCTGGCAACGTCAACGCCCGGCACGAACGACAAAGAGAAT
CACGGTTTTGTGGGGATTTCAAACAAGTACAGCACGTCCATCTCGAGGAA
CGCCGGCATTGAAATCGATGAGGATGAGTACGAAACAATGGTGCTCAACT
CGATGTCGGCGCTTGGCATCGAGACGCCTAAGCAACTGGAGCAACGATTT
GCGACGAAGAGAAACGTGGCACTGAAGGAGGTGCTACAAACCACGACGCC
AAAGGTGAAGGCCGGCAGCTCGGAGCGAACTCTAGACTACACGAACTTGG
CGAACGGGTACTTTGAGTCGTCGACGAAGAATGTTGTTGGTGAGCGGTTA
CACAGGACGCTCAACTTTGGCGAGACTCCCGTGGCAAAAGGCGGTGCGCT
GTACGATATGGCGAGTTGCTACGATGAGCTGGACAGCTTTTGGAAAAGCA
CGTTCCACTTGAGCACCATCCAAGACGTGTGCGTGGCGCTCGGGGGGATG
GGGCAGGACGAGTTCTCCAAGGGCGACTTTCTGCACATGCTGGGCGAGTT
TGTGGAGCCGCACCAGTGCGAGACGCTGGCGGTTGTACTGACGAAGCTCA
AGGTGCTGAGCGTGCACAAGGTGCACGGCAACCGGCCGGTGTACCGCTTC
CTGGCGGCGCAGCCGTTCTCCAAGTAA

protein sequence of Ggra7012.t1

>Ggra7012.t1 ID=Ggra7012.t1|Name=Ggra7012.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=409bp
MFHKENKHAAQQIVDSLRDALSSSSADLNELRTSLDKNAVGTASDAIAVA
KKTTLEVEQLRKQVSPLCTLMRQTPRAAELMTAVYKELESIEQVFSRFQE
FAHDKYGVEPVCVRDGDAASEAVLESPSAQVDEVGDVSNMGGGRGGGASR
SFLKSFTPASKKVPQGSSIPVTPRLEDFGLRDEEIRALATSTPGTNDKEN
HGFVGISNKYSTSISRNAGIEIDEDEYETMVLNSMSALGIETPKQLEQRF
ATKRNVALKEVLQTTTPKVKAGSSERTLDYTNLANGYFESSTKNVVGERL
HRTLNFGETPVAKGGALYDMASCYDELDSFWKSTFHLSTIQDVCVALGGM
GQDEFSKGDFLHMLGEFVEPHQCETLAVVLTKLKVLSVHKVHGNRPVYRF
LAAQPFSK*

mRNA from alignment at tig00000211_pilon:225957..227183+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7012.t1 ID=Ggra7012.t1|Name=Ggra7012.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1227bp|location=Sequence derived from alignment at tig00000211_pilon:225957..227183+ (Gracilaria gracilis GNS1m male)
ATGTTCCACAAGGAAAACAAGCATGCCGCGCAACAAATCGTAGACAGCCT
GCGCGATGCGCTGAGCAGCAGCAGCGCGGACCTCAACGAGCTGCGCACCT
CGTTGGACAAAAACGCCGTCGGCACCGCGTCCGATGCGATTGCCGTCGCG
AAGAAAACCACGCTTGAAGTGGAGCAGCTCCGCAAACAAGTGTCGCCACT
ATGCACTCTCATGCGACAAACGCCGCGCGCGGCGGAGCTTATGACGGCGG
TGTACAAGGAGCTGGAAAGCATTGAGCAAGTGTTTTCTCGCTTCCAAGAG
TTTGCGCACGACAAGTACGGTGTTGAACCGGTGTGCGTGCGCGACGGCGA
CGCTGCGAGCGAGGCGGTGTTGGAGTCACCGTCTGCGCAGGTAGATGAGG
TTGGTGATGTGTCCAACATGGGCGGTGGCAGAGGAGGTGGCGCAAGTAGG
AGCTTTCTCAAGTCGTTCACGCCGGCCTCGAAGAAGGTTCCGCAGGGATC
GAGCATCCCTGTGACGCCGCGGCTGGAGGACTTTGGGCTGCGGGACGAGG
AGATTCGCGCGCTGGCAACGTCAACGCCCGGCACGAACGACAAAGAGAAT
CACGGTTTTGTGGGGATTTCAAACAAGTACAGCACGTCCATCTCGAGGAA
CGCCGGCATTGAAATCGATGAGGATGAGTACGAAACAATGGTGCTCAACT
CGATGTCGGCGCTTGGCATCGAGACGCCTAAGCAACTGGAGCAACGATTT
GCGACGAAGAGAAACGTGGCACTGAAGGAGGTGCTACAAACCACGACGCC
AAAGGTGAAGGCCGGCAGCTCGGAGCGAACTCTAGACTACACGAACTTGG
CGAACGGGTACTTTGAGTCGTCGACGAAGAATGTTGTTGGTGAGCGGTTA
CACAGGACGCTCAACTTTGGCGAGACTCCCGTGGCAAAAGGCGGTGCGCT
GTACGATATGGCGAGTTGCTACGATGAGCTGGACAGCTTTTGGAAAAGCA
CGTTCCACTTGAGCACCATCCAAGACGTGTGCGTGGCGCTCGGGGGGATG
GGGCAGGACGAGTTCTCCAAGGGCGACTTTCTGCACATGCTGGGCGAGTT
TGTGGAGCCGCACCAGTGCGAGACGCTGGCGGTTGTACTGACGAAGCTCA
AGGTGCTGAGCGTGCACAAGGTGCACGGCAACCGGCCGGTGTACCGCTTC
CTGGCGGCGCAGCCGTTCTCCAAGTAA

Coding sequence (CDS) from alignment at tig00000211_pilon:225957..227183+

>Ggra7012.t1 ID=Ggra7012.t1|Name=Ggra7012.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1227bp|location=Sequence derived from alignment at tig00000211_pilon:225957..227183+ (Gracilaria gracilis GNS1m male)
ATGTTCCACAAGGAAAACAAGCATGCCGCGCAACAAATCGTAGACAGCCT
GCGCGATGCGCTGAGCAGCAGCAGCGCGGACCTCAACGAGCTGCGCACCT
CGTTGGACAAAAACGCCGTCGGCACCGCGTCCGATGCGATTGCCGTCGCG
AAGAAAACCACGCTTGAAGTGGAGCAGCTCCGCAAACAAGTGTCGCCACT
ATGCACTCTCATGCGACAAACGCCGCGCGCGGCGGAGCTTATGACGGCGG
TGTACAAGGAGCTGGAAAGCATTGAGCAAGTGTTTTCTCGCTTCCAAGAG
TTTGCGCACGACAAGTACGGTGTTGAACCGGTGTGCGTGCGCGACGGCGA
CGCTGCGAGCGAGGCGGTGTTGGAGTCACCGTCTGCGCAGGTAGATGAGG
TTGGTGATGTGTCCAACATGGGCGGTGGCAGAGGAGGTGGCGCAAGTAGG
AGCTTTCTCAAGTCGTTCACGCCGGCCTCGAAGAAGGTTCCGCAGGGATC
GAGCATCCCTGTGACGCCGCGGCTGGAGGACTTTGGGCTGCGGGACGAGG
AGATTCGCGCGCTGGCAACGTCAACGCCCGGCACGAACGACAAAGAGAAT
CACGGTTTTGTGGGGATTTCAAACAAGTACAGCACGTCCATCTCGAGGAA
CGCCGGCATTGAAATCGATGAGGATGAGTACGAAACAATGGTGCTCAACT
CGATGTCGGCGCTTGGCATCGAGACGCCTAAGCAACTGGAGCAACGATTT
GCGACGAAGAGAAACGTGGCACTGAAGGAGGTGCTACAAACCACGACGCC
AAAGGTGAAGGCCGGCAGCTCGGAGCGAACTCTAGACTACACGAACTTGG
CGAACGGGTACTTTGAGTCGTCGACGAAGAATGTTGTTGGTGAGCGGTTA
CACAGGACGCTCAACTTTGGCGAGACTCCCGTGGCAAAAGGCGGTGCGCT
GTACGATATGGCGAGTTGCTACGATGAGCTGGACAGCTTTTGGAAAAGCA
CGTTCCACTTGAGCACCATCCAAGACGTGTGCGTGGCGCTCGGGGGGATG
GGGCAGGACGAGTTCTCCAAGGGCGACTTTCTGCACATGCTGGGCGAGTT
TGTGGAGCCGCACCAGTGCGAGACGCTGGCGGTTGTACTGACGAAGCTCA
AGGTGCTGAGCGTGCACAAGGTGCACGGCAACCGGCCGGTGTACCGCTTC
CTGGCGGCGCAGCCGTTCTCCAAGTAA