Ggra7009.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7009.t1
Unique NameGgra7009.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length340
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000211_piloncontigtig00000211_pilon:186556..187792 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog756067.MicvaDRAFT_4726
PFAMsChlorophyllase,Chlorophyllase2
Max annot lvl1117|Cyanobacteria
Evalue0.000161
EggNOG OGsCOG4188@1|root,COG4188@2|Bacteria,1G27H@1117|Cyanobacteria,1H94P@1150|Oscillatoriales
DescriptionChlorophyllase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7009Ggra7009Gracilaria gracilis GNS1m malegenetig00000211_pilon 186556..187792 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7009.t1Ggra7009.t1Gracilaria gracilis GNS1m malepolypeptidetig00000211_pilon 186556..187792 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7009.t1.stop1Ggra7009.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000211_pilon 186556..186558 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7009.t1.CDS1Ggra7009.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000211_pilon 186556..186928 -
Ggra7009.t1.CDS2Ggra7009.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000211_pilon 187066..187302 -
Ggra7009.t1.CDS3Ggra7009.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000211_pilon 187383..187792 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7009.t1.exon1Ggra7009.t1.exon1Gracilaria gracilis GNS1m maleexontig00000211_pilon 186556..186928 -
Ggra7009.t1.exon2Ggra7009.t1.exon2Gracilaria gracilis GNS1m maleexontig00000211_pilon 187066..187302 -
Ggra7009.t1.exon3Ggra7009.t1.exon3Gracilaria gracilis GNS1m maleexontig00000211_pilon 187383..187792 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7009.t1.intron1Ggra7009.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000211_pilon 186929..187065 -
Ggra7009.t1.intron2Ggra7009.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000211_pilon 187303..187382 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7009.t1.start1Ggra7009.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000211_pilon 187790..187792 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7009.t1 ID=Ggra7009.t1|Name=Ggra7009.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=340bp
MSVKIAFFVIILSLTTFTCGTRIITTTLQVPHQLWDLTDNNMRTTTVPFT
LYARRPVRKSPLVIILPGALLQASDYQDLSSAFAYRGFVVAVPQYDQREQ
PFSSRSAILRAHLSFTSSLKPPCPANGQFSSAALVSTFLSYVSRSSHSHW
LLRKILVDRTVIFGHSFGGLSALFLLSKKCDPMSAFEVPQSALACEQPAP
LPTHARIVGLALFEGIPRSPDITFAIPPDVFVSVMTTQFYVNNTASILQS
NGNLVDALISDANHFGPNDFTNASMSLPCAFPRPPEASFRTDYRTQRTVI
STIATITSRSYRVFFKGQDKLMLTRLPVVNPRVQILNVR*
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spliced messenger RNA

>Ggra7009.t1 ID=Ggra7009.t1|Name=Ggra7009.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1020bp|location=Sequence derived from alignment at tig00000211_pilon:186556..187792- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGTCAAAATCGCCTTCTTTGTTATCATTCTTTCTCTCACGACATT
CACATGTGGTACCCGAATCATAACAACCACCCTCCAAGTTCCACACCAGC
TCTGGGACTTGACAGACAACAACATGCGAACAACCACAGTACCATTTACT
CTGTATGCTCGCCGGCCTGTTCGGAAAAGCCCCCTGGTCATCATCCTTCC
CGGTGCACTCCTTCAGGCCTCCGACTATCAAGATCTGTCATCTGCCTTTG
CCTACCGAGGGTTTGTCGTGGCAGTCCCTCAATACGACCAACGTGAGCAA
CCCTTTTCTTCCAGATCCGCAATTCTCAGGGCTCATCTCAGCTTCACCTC
AAGTTTGAAACCACCATGTCCAGCGAATGGCCAATTTTCATCCGCAGCCC
TCGTTTCAACCTTCCTCTCCTACGTGTCTCGGAGTTCCCATTCGCACTGG
TTGCTCCGCAAAATTCTCGTTGACCGTACCGTCATATTTGGTCACAGTTT
CGGCGGACTTTCGGCTCTCTTTCTTTTATCCAAGAAGTGTGATCCCATGA
GTGCTTTCGAAGTGCCTCAGTCAGCACTTGCATGTGAACAACCTGCTCCT
CTTCCGACTCATGCGCGCATTGTCGGTCTGGCGCTATTTGAAGGAATACC
ACGGTCCCCAGATATCACATTCGCAATTCCGCCCGACGTGTTTGTGTCGG
TTATGACTACTCAGTTTTATGTCAACAACACTGCGTCCATTCTCCAATCA
AACGGGAACCTGGTTGACGCTCTCATTTCCGATGCGAATCACTTTGGTCC
GAACGATTTCACCAATGCATCCATGTCGCTACCTTGCGCTTTTCCCCGAC
CTCCTGAAGCCTCATTCCGTACCGATTATCGAACACAGCGAACCGTAATT
TCAACTATTGCCACAATAACCAGCCGAAGCTACCGCGTCTTTTTCAAAGG
ACAAGACAAACTTATGCTCACACGTTTACCCGTGGTCAACCCCCGAGTGC
AGATCTTGAATGTTCGCTAG
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protein sequence of Ggra7009.t1

>Ggra7009.t1 ID=Ggra7009.t1|Name=Ggra7009.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=340bp
MSVKIAFFVIILSLTTFTCGTRIITTTLQVPHQLWDLTDNNMRTTTVPFT
LYARRPVRKSPLVIILPGALLQASDYQDLSSAFAYRGFVVAVPQYDQREQ
PFSSRSAILRAHLSFTSSLKPPCPANGQFSSAALVSTFLSYVSRSSHSHW
LLRKILVDRTVIFGHSFGGLSALFLLSKKCDPMSAFEVPQSALACEQPAP
LPTHARIVGLALFEGIPRSPDITFAIPPDVFVSVMTTQFYVNNTASILQS
NGNLVDALISDANHFGPNDFTNASMSLPCAFPRPPEASFRTDYRTQRTVI
STIATITSRSYRVFFKGQDKLMLTRLPVVNPRVQILNVR*
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mRNA from alignment at tig00000211_pilon:186556..187792-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7009.t1 ID=Ggra7009.t1|Name=Ggra7009.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1237bp|location=Sequence derived from alignment at tig00000211_pilon:186556..187792- (Gracilaria gracilis GNS1m male)
ATGTCTGTCAAAATCGCCTTCTTTGTTATCATTCTTTCTCTCACGACATT
CACATGTGGTACCCGAATCATAACAACCACCCTCCAAGTTCCACACCAGC
TCTGGGACTTGACAGACAACAACATGCGAACAACCACAGTACCATTTACT
CTGTATGCTCGCCGGCCTGTTCGGAAAAGCCCCCTGGTCATCATCCTTCC
CGGTGCACTCCTTCAGGCCTCCGACTATCAAGATCTGTCATCTGCCTTTG
CCTACCGAGGGTTTGTCGTGGCAGTCCCTCAATACGACCAACGTGAGCAA
CCCTTTTCTTCCAGATCCGCAATTCTCAGGGCTCATCTCAGCTTCACCTC
AAGTTTGAAACCACCATGTCCAGCGAATGGCCAATTTTCATCCGCAGCCC
TCGTTTCAACGTAAGTCTCTCGATCCCCTGTTCCTCAGTTGCGGAGTCTC
ACACCAATAACTGATTCCCTCATACCTGCCCATTACCCAGCTTCCTCTCC
TACGTGTCTCGGAGTTCCCATTCGCACTGGTTGCTCCGCAAAATTCTCGT
TGACCGTACCGTCATATTTGGTCACAGTTTCGGCGGACTTTCGGCTCTCT
TTCTTTTATCCAAGAAGTGTGATCCCATGAGTGCTTTCGAAGTGCCTCAG
TCAGCACTTGCATGTGAACAACCTGCTCCTCTTCCGACTCATGCGCGCAT
TGTCGGTCTGGCGCTATTTGAAGGAATGTACGTCAACGCCCAAACTCTTT
TTTATCCCCACTTCATGTTCATCATGTTTCAAATATTCTAAATCACGGAT
CATCCACTCCACGGCTGTCACCAACTAACACTTGCACGGGGCCGTTTTTG
TTATTTCTCAACAGACCACGGTCCCCAGATATCACATTCGCAATTCCGCC
CGACGTGTTTGTGTCGGTTATGACTACTCAGTTTTATGTCAACAACACTG
CGTCCATTCTCCAATCAAACGGGAACCTGGTTGACGCTCTCATTTCCGAT
GCGAATCACTTTGGTCCGAACGATTTCACCAATGCATCCATGTCGCTACC
TTGCGCTTTTCCCCGACCTCCTGAAGCCTCATTCCGTACCGATTATCGAA
CACAGCGAACCGTAATTTCAACTATTGCCACAATAACCAGCCGAAGCTAC
CGCGTCTTTTTCAAAGGACAAGACAAACTTATGCTCACACGTTTACCCGT
GGTCAACCCCCGAGTGCAGATCTTGAATGTTCGCTAG
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Coding sequence (CDS) from alignment at tig00000211_pilon:186556..187792-

>Ggra7009.t1 ID=Ggra7009.t1|Name=Ggra7009.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1020bp|location=Sequence derived from alignment at tig00000211_pilon:186556..187792- (Gracilaria gracilis GNS1m male)
ATGTCTGTCAAAATCGCCTTCTTTGTTATCATTCTTTCTCTCACGACATT
CACATGTGGTACCCGAATCATAACAACCACCCTCCAAGTTCCACACCAGC
TCTGGGACTTGACAGACAACAACATGCGAACAACCACAGTACCATTTACT
CTGTATGCTCGCCGGCCTGTTCGGAAAAGCCCCCTGGTCATCATCCTTCC
CGGTGCACTCCTTCAGGCCTCCGACTATCAAGATCTGTCATCTGCCTTTG
CCTACCGAGGGTTTGTCGTGGCAGTCCCTCAATACGACCAACGTGAGCAA
CCCTTTTCTTCCAGATCCGCAATTCTCAGGGCTCATCTCAGCTTCACCTC
AAGTTTGAAACCACCATGTCCAGCGAATGGCCAATTTTCATCCGCAGCCC
TCGTTTCAACCTTCCTCTCCTACGTGTCTCGGAGTTCCCATTCGCACTGG
TTGCTCCGCAAAATTCTCGTTGACCGTACCGTCATATTTGGTCACAGTTT
CGGCGGACTTTCGGCTCTCTTTCTTTTATCCAAGAAGTGTGATCCCATGA
GTGCTTTCGAAGTGCCTCAGTCAGCACTTGCATGTGAACAACCTGCTCCT
CTTCCGACTCATGCGCGCATTGTCGGTCTGGCGCTATTTGAAGGAATACC
ACGGTCCCCAGATATCACATTCGCAATTCCGCCCGACGTGTTTGTGTCGG
TTATGACTACTCAGTTTTATGTCAACAACACTGCGTCCATTCTCCAATCA
AACGGGAACCTGGTTGACGCTCTCATTTCCGATGCGAATCACTTTGGTCC
GAACGATTTCACCAATGCATCCATGTCGCTACCTTGCGCTTTTCCCCGAC
CTCCTGAAGCCTCATTCCGTACCGATTATCGAACACAGCGAACCGTAATT
TCAACTATTGCCACAATAACCAGCCGAAGCTACCGCGTCTTTTTCAAAGG
ACAAGACAAACTTATGCTCACACGTTTACCCGTGGTCAACCCCCGAGTGC
AGATCTTGAATGTTCGCTAG
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