Ggra7007.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7007.t1
Unique Name	Ggra7007.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	584

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000211_pilon	contig	tig00000211_pilon:173278..175029 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4533.OB02G41610.1
PFAMs	DEAD,Helicase_C,RecQ_Zn_bind
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K10901
KEGG Pathway	ko03440,ko03460,map03440,map03460
KEGG Module	M00295,M00414
GOs	GO:0000724,GO:0000725,GO:0000733,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009378,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0033554,GO:0034641,GO:0036310,GO:0042623,GO:0043138,GO:0043140,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097617,GO:0140097,GO:1901360,GO:1901363
Evalue	3.31e-92
EggNOG OGs	COG0514@1\|root,KOG0351@2759\|Eukaryota,37MM0@33090\|Viridiplantae,3G8UK@35493\|Streptophyta,3KTCU@4447\|Liliopsida,3IDDQ@38820\|Poales
EC	3.6.4.12
Description	Belongs to the helicase family. RecQ subfamily
COG category	L
BRITE	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7007	Ggra7007	Gracilaria gracilis GNS1m male	gene	tig00000211_pilon 173278..175029 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7007.t1.start1	Ggra7007.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000211_pilon 173278..173280 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7007.t1.CDS1	Ggra7007.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000211_pilon 173278..175029 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7007.t1.exon1	Ggra7007.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000211_pilon 173278..175029 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7007.t1.stop1	Ggra7007.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000211_pilon 175027..175029 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7007.t1	Ggra7007.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000211_pilon 173278..175029 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000211_pilon:173278..175029+
coding sequence from alignment at tig00000211_pilon:173278..175029+

mRNA sequence

>Ggra7007.t1 ID=Ggra7007.t1|Name=Ggra7007.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=584bp
MVDEAHSLLKRLLAEHFGHKGLRENQATTIKHLLAGRDVLVIAPTGSGKS
LTYQLPALLLHRRYNQLTLVVTPLLSLMHNQVAALRALSIPAAMLSSAES
VVHNREVMASLHRVRIPFALLYITPEKLTSPSFLEVLHTLYRKQKLALVA
VDEAHCISEWGHDFRKAYANLGVVKKHFPTVPVVALTATATPFVQNHILK
SLCLPDAKHVRTSFLRSNVRYQVRYVDTLQTAVELDIISYILRRRNADQS
FQTGIVYAFKRSTVDVVADLLNTNGVPALSYHAGLSTKARKAAQHKFESG
ECPVVVASTAFGMGIDVSAIRYVIHHSIPKSLEAFYQESGRAGRDGKPCD
SVVYYSDRDVELYQFLNRQGQQDRNEHLVESREKKLKAVKDYCTKLRCRR
VVLLEHFGEKASASKICGRHGCDVCCDINDVRRRMAIRVRNPAARHSFRQ
RSSAVSSPAADFQSARSMLKQQQEKELAAERSKLKEKIEDFSEEEQDPEA
KQALRSIELGSDNDIDFEALRRVEKAHERQRLDRLKRPRDRIMDKLGLQK
EQVASASSSAAKRRKSSQSKISFGKRRVPKRTP*

spliced messenger RNA

>Ggra7007.t1 ID=Ggra7007.t1|Name=Ggra7007.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1752bp|location=Sequence derived from alignment at tig00000211_pilon:173278..175029+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGACGAGGCGCATTCGTTGCTGAAGCGCCTTCTTGCCGAGCACTT
CGGACACAAGGGCCTGCGCGAGAACCAGGCGACGACTATCAAGCATCTGT
TGGCGGGGCGCGATGTGCTCGTCATTGCGCCTACCGGCAGCGGCAAATCG
CTTACGTACCAGCTGCCGGCGCTTTTGTTGCACCGGCGCTACAATCAACT
CACGTTGGTCGTGACGCCGTTGCTGTCGCTCATGCATAACCAGGTCGCGG
CGCTGCGCGCGCTGAGCATCCCGGCTGCGATGCTGTCCTCCGCTGAATCG
GTTGTTCATAATCGTGAGGTGATGGCGTCGTTGCATCGAGTTCGAATTCC
GTTTGCTCTTCTCTATATCACCCCGGAGAAGCTCACATCACCATCGTTTC
TAGAAGTGTTGCATACGCTGTATCGCAAACAGAAGTTGGCACTCGTCGCG
GTTGATGAGGCCCATTGTATCTCCGAGTGGGGACATGACTTTCGCAAGGC
GTATGCAAATCTCGGCGTTGTCAAGAAGCATTTTCCAACCGTACCGGTCG
TTGCGCTTACCGCCACAGCTACACCTTTTGTACAGAATCACATTCTCAAG
TCGTTGTGCCTCCCTGATGCAAAGCACGTGCGCACGTCTTTTTTGAGAAG
TAACGTGCGCTATCAAGTGCGATATGTAGATACTTTGCAAACAGCTGTCG
AGCTTGACATTATATCATATATACTTCGGAGGCGAAACGCAGATCAATCC
TTCCAGACTGGCATCGTGTACGCGTTTAAACGCTCCACCGTAGACGTAGT
GGCAGACTTGTTGAACACAAATGGGGTGCCTGCTCTGTCCTACCACGCTG
GACTGTCCACAAAGGCAAGAAAGGCCGCCCAGCACAAATTTGAAAGCGGG
GAATGTCCCGTCGTTGTTGCATCCACGGCATTTGGAATGGGTATTGATGT
ATCAGCCATTCGCTATGTCATTCACCACTCCATTCCAAAAAGCCTGGAGG
CCTTCTATCAGGAGAGCGGACGTGCAGGGCGTGATGGTAAACCGTGCGAT
AGTGTCGTTTACTATTCGGACCGTGACGTTGAGCTGTATCAATTTCTCAA
TCGCCAAGGCCAACAAGACAGAAATGAGCATCTCGTCGAATCACGGGAGA
AGAAGTTGAAGGCGGTAAAAGACTACTGTACGAAGCTGCGATGTAGACGC
GTTGTTCTACTAGAACATTTTGGTGAGAAGGCGTCTGCCAGCAAGATTTG
TGGCCGTCATGGGTGTGATGTTTGTTGTGACATCAATGACGTTCGAAGAC
GAATGGCCATTCGTGTCCGCAATCCTGCAGCAAGGCATAGCTTTCGTCAA
CGTTCGAGTGCGGTTTCTTCGCCGGCTGCCGACTTTCAAAGCGCGCGATC
TATGTTGAAGCAACAACAAGAGAAAGAACTTGCTGCCGAACGCTCCAAGT
TGAAGGAGAAAATCGAAGATTTTAGCGAAGAAGAACAAGACCCAGAAGCA
AAACAGGCGCTGAGGAGCATCGAACTCGGTTCTGATAACGACATTGACTT
CGAAGCACTGAGAAGGGTGGAGAAAGCACACGAGAGACAGCGGTTGGATA
GACTGAAGAGACCGCGAGATAGGATCATGGACAAGCTTGGGCTCCAAAAG
GAACAGGTTGCGTCTGCATCCAGCTCTGCCGCAAAACGCAGAAAGAGCTC
GCAGAGTAAGATCAGCTTCGGGAAACGTCGTGTCCCGAAAAGAACACCAT
AA

protein sequence of Ggra7007.t1

>Ggra7007.t1 ID=Ggra7007.t1|Name=Ggra7007.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=584bp
MVDEAHSLLKRLLAEHFGHKGLRENQATTIKHLLAGRDVLVIAPTGSGKS
LTYQLPALLLHRRYNQLTLVVTPLLSLMHNQVAALRALSIPAAMLSSAES
VVHNREVMASLHRVRIPFALLYITPEKLTSPSFLEVLHTLYRKQKLALVA
VDEAHCISEWGHDFRKAYANLGVVKKHFPTVPVVALTATATPFVQNHILK
SLCLPDAKHVRTSFLRSNVRYQVRYVDTLQTAVELDIISYILRRRNADQS
FQTGIVYAFKRSTVDVVADLLNTNGVPALSYHAGLSTKARKAAQHKFESG
ECPVVVASTAFGMGIDVSAIRYVIHHSIPKSLEAFYQESGRAGRDGKPCD
SVVYYSDRDVELYQFLNRQGQQDRNEHLVESREKKLKAVKDYCTKLRCRR
VVLLEHFGEKASASKICGRHGCDVCCDINDVRRRMAIRVRNPAARHSFRQ
RSSAVSSPAADFQSARSMLKQQQEKELAAERSKLKEKIEDFSEEEQDPEA
KQALRSIELGSDNDIDFEALRRVEKAHERQRLDRLKRPRDRIMDKLGLQK
EQVASASSSAAKRRKSSQSKISFGKRRVPKRTP*

mRNA from alignment at tig00000211_pilon:173278..175029+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7007.t1 ID=Ggra7007.t1|Name=Ggra7007.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1752bp|location=Sequence derived from alignment at tig00000211_pilon:173278..175029+ (Gracilaria gracilis GNS1m male)
ATGGTCGACGAGGCGCATTCGTTGCTGAAGCGCCTTCTTGCCGAGCACTT
CGGACACAAGGGCCTGCGCGAGAACCAGGCGACGACTATCAAGCATCTGT
TGGCGGGGCGCGATGTGCTCGTCATTGCGCCTACCGGCAGCGGCAAATCG
CTTACGTACCAGCTGCCGGCGCTTTTGTTGCACCGGCGCTACAATCAACT
CACGTTGGTCGTGACGCCGTTGCTGTCGCTCATGCATAACCAGGTCGCGG
CGCTGCGCGCGCTGAGCATCCCGGCTGCGATGCTGTCCTCCGCTGAATCG
GTTGTTCATAATCGTGAGGTGATGGCGTCGTTGCATCGAGTTCGAATTCC
GTTTGCTCTTCTCTATATCACCCCGGAGAAGCTCACATCACCATCGTTTC
TAGAAGTGTTGCATACGCTGTATCGCAAACAGAAGTTGGCACTCGTCGCG
GTTGATGAGGCCCATTGTATCTCCGAGTGGGGACATGACTTTCGCAAGGC
GTATGCAAATCTCGGCGTTGTCAAGAAGCATTTTCCAACCGTACCGGTCG
TTGCGCTTACCGCCACAGCTACACCTTTTGTACAGAATCACATTCTCAAG
TCGTTGTGCCTCCCTGATGCAAAGCACGTGCGCACGTCTTTTTTGAGAAG
TAACGTGCGCTATCAAGTGCGATATGTAGATACTTTGCAAACAGCTGTCG
AGCTTGACATTATATCATATATACTTCGGAGGCGAAACGCAGATCAATCC
TTCCAGACTGGCATCGTGTACGCGTTTAAACGCTCCACCGTAGACGTAGT
GGCAGACTTGTTGAACACAAATGGGGTGCCTGCTCTGTCCTACCACGCTG
GACTGTCCACAAAGGCAAGAAAGGCCGCCCAGCACAAATTTGAAAGCGGG
GAATGTCCCGTCGTTGTTGCATCCACGGCATTTGGAATGGGTATTGATGT
ATCAGCCATTCGCTATGTCATTCACCACTCCATTCCAAAAAGCCTGGAGG
CCTTCTATCAGGAGAGCGGACGTGCAGGGCGTGATGGTAAACCGTGCGAT
AGTGTCGTTTACTATTCGGACCGTGACGTTGAGCTGTATCAATTTCTCAA
TCGCCAAGGCCAACAAGACAGAAATGAGCATCTCGTCGAATCACGGGAGA
AGAAGTTGAAGGCGGTAAAAGACTACTGTACGAAGCTGCGATGTAGACGC
GTTGTTCTACTAGAACATTTTGGTGAGAAGGCGTCTGCCAGCAAGATTTG
TGGCCGTCATGGGTGTGATGTTTGTTGTGACATCAATGACGTTCGAAGAC
GAATGGCCATTCGTGTCCGCAATCCTGCAGCAAGGCATAGCTTTCGTCAA
CGTTCGAGTGCGGTTTCTTCGCCGGCTGCCGACTTTCAAAGCGCGCGATC
TATGTTGAAGCAACAACAAGAGAAAGAACTTGCTGCCGAACGCTCCAAGT
TGAAGGAGAAAATCGAAGATTTTAGCGAAGAAGAACAAGACCCAGAAGCA
AAACAGGCGCTGAGGAGCATCGAACTCGGTTCTGATAACGACATTGACTT
CGAAGCACTGAGAAGGGTGGAGAAAGCACACGAGAGACAGCGGTTGGATA
GACTGAAGAGACCGCGAGATAGGATCATGGACAAGCTTGGGCTCCAAAAG
GAACAGGTTGCGTCTGCATCCAGCTCTGCCGCAAAACGCAGAAAGAGCTC
GCAGAGTAAGATCAGCTTCGGGAAACGTCGTGTCCCGAAAAGAACACCAT
AA

Coding sequence (CDS) from alignment at tig00000211_pilon:173278..175029+

>Ggra7007.t1 ID=Ggra7007.t1|Name=Ggra7007.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1752bp|location=Sequence derived from alignment at tig00000211_pilon:173278..175029+ (Gracilaria gracilis GNS1m male)
ATGGTCGACGAGGCGCATTCGTTGCTGAAGCGCCTTCTTGCCGAGCACTT
CGGACACAAGGGCCTGCGCGAGAACCAGGCGACGACTATCAAGCATCTGT
TGGCGGGGCGCGATGTGCTCGTCATTGCGCCTACCGGCAGCGGCAAATCG
CTTACGTACCAGCTGCCGGCGCTTTTGTTGCACCGGCGCTACAATCAACT
CACGTTGGTCGTGACGCCGTTGCTGTCGCTCATGCATAACCAGGTCGCGG
CGCTGCGCGCGCTGAGCATCCCGGCTGCGATGCTGTCCTCCGCTGAATCG
GTTGTTCATAATCGTGAGGTGATGGCGTCGTTGCATCGAGTTCGAATTCC
GTTTGCTCTTCTCTATATCACCCCGGAGAAGCTCACATCACCATCGTTTC
TAGAAGTGTTGCATACGCTGTATCGCAAACAGAAGTTGGCACTCGTCGCG
GTTGATGAGGCCCATTGTATCTCCGAGTGGGGACATGACTTTCGCAAGGC
GTATGCAAATCTCGGCGTTGTCAAGAAGCATTTTCCAACCGTACCGGTCG
TTGCGCTTACCGCCACAGCTACACCTTTTGTACAGAATCACATTCTCAAG
TCGTTGTGCCTCCCTGATGCAAAGCACGTGCGCACGTCTTTTTTGAGAAG
TAACGTGCGCTATCAAGTGCGATATGTAGATACTTTGCAAACAGCTGTCG
AGCTTGACATTATATCATATATACTTCGGAGGCGAAACGCAGATCAATCC
TTCCAGACTGGCATCGTGTACGCGTTTAAACGCTCCACCGTAGACGTAGT
GGCAGACTTGTTGAACACAAATGGGGTGCCTGCTCTGTCCTACCACGCTG
GACTGTCCACAAAGGCAAGAAAGGCCGCCCAGCACAAATTTGAAAGCGGG
GAATGTCCCGTCGTTGTTGCATCCACGGCATTTGGAATGGGTATTGATGT
ATCAGCCATTCGCTATGTCATTCACCACTCCATTCCAAAAAGCCTGGAGG
CCTTCTATCAGGAGAGCGGACGTGCAGGGCGTGATGGTAAACCGTGCGAT
AGTGTCGTTTACTATTCGGACCGTGACGTTGAGCTGTATCAATTTCTCAA
TCGCCAAGGCCAACAAGACAGAAATGAGCATCTCGTCGAATCACGGGAGA
AGAAGTTGAAGGCGGTAAAAGACTACTGTACGAAGCTGCGATGTAGACGC
GTTGTTCTACTAGAACATTTTGGTGAGAAGGCGTCTGCCAGCAAGATTTG
TGGCCGTCATGGGTGTGATGTTTGTTGTGACATCAATGACGTTCGAAGAC
GAATGGCCATTCGTGTCCGCAATCCTGCAGCAAGGCATAGCTTTCGTCAA
CGTTCGAGTGCGGTTTCTTCGCCGGCTGCCGACTTTCAAAGCGCGCGATC
TATGTTGAAGCAACAACAAGAGAAAGAACTTGCTGCCGAACGCTCCAAGT
TGAAGGAGAAAATCGAAGATTTTAGCGAAGAAGAACAAGACCCAGAAGCA
AAACAGGCGCTGAGGAGCATCGAACTCGGTTCTGATAACGACATTGACTT
CGAAGCACTGAGAAGGGTGGAGAAAGCACACGAGAGACAGCGGTTGGATA
GACTGAAGAGACCGCGAGATAGGATCATGGACAAGCTTGGGCTCCAAAAG
GAACAGGTTGCGTCTGCATCCAGCTCTGCCGCAAAACGCAGAAAGAGCTC
GCAGAGTAAGATCAGCTTCGGGAAACGTCGTGTCCCGAAAAGAACACCAT
AA