Ggra699.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra699.t2
Unique NameGgra699.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length241
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000205_piloncontigtig00000205_pilon:105456..106178 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4555.Si009328m
PFAMsRaffinose_syn
Max annot lvl35493|Streptophyta
Evalue8.8e-27
EggNOG OGs2CC3R@1|root,2QQDV@2759|Eukaryota,37T96@33090|Viridiplantae,3GDWP@35493|Streptophyta,3KY33@4447|Liliopsida,3IDIG@38820|Poales
DescriptionRaffinose synthase or seed imbibition protein Sip1
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra699Ggra699Gracilaria gracilis GNS1m malegenetig00000205_pilon 105456..107850 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra699.t2.stop1Ggra699.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000205_pilon 105456..105458 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra699.t2.CDS1Ggra699.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000205_pilon 105456..106178 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra699.t2.exon1Ggra699.t2.exon1Gracilaria gracilis GNS1m maleexontig00000205_pilon 105456..106178 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra699.t2.start1Ggra699.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000205_pilon 106176..106178 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra699.t2Ggra699.t2Gracilaria gracilis GNS1m malepolypeptidetig00000205_pilon 105456..106178 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra699.t2 ID=Ggra699.t2|Name=Ggra699.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=241bp
MVVWHVLRNAMNTLMLGEMFPISDWDMFTAHHKLARTHAIARVLSGGHIC
ISDSPSLLQMEGVALLKSLLTSDGKILRCEESGRPAADSIFDDPRTDSAK
LFKVFNCSSVNGVIGVFNLHQSTKDSSTSGLFAPCDIHPFYKMSAEVTYL
SMIPGPPMRLFHHKNQFEPCPVQVSSLDAPIVHMSPVLNISSEMQFAALG
NPRMLNAGAVVASIATKSISCETDIINDIYEKLSLSKSTT*
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spliced messenger RNA

>Ggra699.t2 ID=Ggra699.t2|Name=Ggra699.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00000205_pilon:105456..106178- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGTGTGGCATGTTCTTAGAAATGCTATGAACACATTAATGTTGGG
AGAGATGTTCCCAATTTCCGACTGGGATATGTTTACCGCACATCACAAGC
TAGCTAGAACGCACGCTATTGCCAGAGTTTTGTCTGGGGGACATATATGC
ATTAGTGACTCTCCTTCTCTGCTTCAAATGGAAGGCGTGGCTTTACTCAA
GAGTCTGTTAACGTCAGATGGAAAGATTTTGAGATGTGAGGAATCCGGTC
GGCCGGCTGCCGATAGCATCTTTGACGACCCGCGAACAGATTCGGCGAAG
TTGTTTAAAGTGTTCAATTGCTCATCCGTGAATGGAGTTATTGGTGTGTT
TAATCTTCACCAAAGTACAAAGGATAGCAGCACTAGCGGTTTGTTTGCCC
CATGCGATATACATCCCTTTTATAAAATGTCTGCCGAAGTAACATACCTG
TCGATGATTCCTGGTCCGCCGATGAGACTATTCCACCACAAGAACCAATT
CGAGCCGTGCCCTGTGCAAGTTTCATCCCTCGATGCTCCTATCGTGCATA
TGAGTCCCGTGTTGAACATATCTAGCGAAATGCAATTTGCTGCATTGGGA
AATCCCAGAATGCTAAACGCCGGTGCGGTCGTAGCCTCCATAGCGACTAA
GAGCATCTCTTGTGAAACAGATATCATCAACGACATTTATGAAAAGCTGT
CCCTCTCAAAATCGACAACATAA
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protein sequence of Ggra699.t2

>Ggra699.t2 ID=Ggra699.t2|Name=Ggra699.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=241bp
MVVWHVLRNAMNTLMLGEMFPISDWDMFTAHHKLARTHAIARVLSGGHIC
ISDSPSLLQMEGVALLKSLLTSDGKILRCEESGRPAADSIFDDPRTDSAK
LFKVFNCSSVNGVIGVFNLHQSTKDSSTSGLFAPCDIHPFYKMSAEVTYL
SMIPGPPMRLFHHKNQFEPCPVQVSSLDAPIVHMSPVLNISSEMQFAALG
NPRMLNAGAVVASIATKSISCETDIINDIYEKLSLSKSTT*
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mRNA from alignment at tig00000205_pilon:105456..106178-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra699.t2 ID=Ggra699.t2|Name=Ggra699.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00000205_pilon:105456..106178- (Gracilaria gracilis GNS1m male)
ATGGTTGTGTGGCATGTTCTTAGAAATGCTATGAACACATTAATGTTGGG
AGAGATGTTCCCAATTTCCGACTGGGATATGTTTACCGCACATCACAAGC
TAGCTAGAACGCACGCTATTGCCAGAGTTTTGTCTGGGGGACATATATGC
ATTAGTGACTCTCCTTCTCTGCTTCAAATGGAAGGCGTGGCTTTACTCAA
GAGTCTGTTAACGTCAGATGGAAAGATTTTGAGATGTGAGGAATCCGGTC
GGCCGGCTGCCGATAGCATCTTTGACGACCCGCGAACAGATTCGGCGAAG
TTGTTTAAAGTGTTCAATTGCTCATCCGTGAATGGAGTTATTGGTGTGTT
TAATCTTCACCAAAGTACAAAGGATAGCAGCACTAGCGGTTTGTTTGCCC
CATGCGATATACATCCCTTTTATAAAATGTCTGCCGAAGTAACATACCTG
TCGATGATTCCTGGTCCGCCGATGAGACTATTCCACCACAAGAACCAATT
CGAGCCGTGCCCTGTGCAAGTTTCATCCCTCGATGCTCCTATCGTGCATA
TGAGTCCCGTGTTGAACATATCTAGCGAAATGCAATTTGCTGCATTGGGA
AATCCCAGAATGCTAAACGCCGGTGCGGTCGTAGCCTCCATAGCGACTAA
GAGCATCTCTTGTGAAACAGATATCATCAACGACATTTATGAAAAGCTGT
CCCTCTCAAAATCGACAACATAA
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Coding sequence (CDS) from alignment at tig00000205_pilon:105456..106178-

>Ggra699.t2 ID=Ggra699.t2|Name=Ggra699.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=723bp|location=Sequence derived from alignment at tig00000205_pilon:105456..106178- (Gracilaria gracilis GNS1m male)
ATGGTTGTGTGGCATGTTCTTAGAAATGCTATGAACACATTAATGTTGGG
AGAGATGTTCCCAATTTCCGACTGGGATATGTTTACCGCACATCACAAGC
TAGCTAGAACGCACGCTATTGCCAGAGTTTTGTCTGGGGGACATATATGC
ATTAGTGACTCTCCTTCTCTGCTTCAAATGGAAGGCGTGGCTTTACTCAA
GAGTCTGTTAACGTCAGATGGAAAGATTTTGAGATGTGAGGAATCCGGTC
GGCCGGCTGCCGATAGCATCTTTGACGACCCGCGAACAGATTCGGCGAAG
TTGTTTAAAGTGTTCAATTGCTCATCCGTGAATGGAGTTATTGGTGTGTT
TAATCTTCACCAAAGTACAAAGGATAGCAGCACTAGCGGTTTGTTTGCCC
CATGCGATATACATCCCTTTTATAAAATGTCTGCCGAAGTAACATACCTG
TCGATGATTCCTGGTCCGCCGATGAGACTATTCCACCACAAGAACCAATT
CGAGCCGTGCCCTGTGCAAGTTTCATCCCTCGATGCTCCTATCGTGCATA
TGAGTCCCGTGTTGAACATATCTAGCGAAATGCAATTTGCTGCATTGGGA
AATCCCAGAATGCTAAACGCCGGTGCGGTCGTAGCCTCCATAGCGACTAA
GAGCATCTCTTGTGAAACAGATATCATCAACGACATTTATGAAAAGCTGT
CCCTCTCAAAATCGACAACATAA
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