Ggra6949.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6949.t1
Unique NameGgra6949.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length211
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000115_piloncontigtig00000115_pilon:284000..284632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1246995.AFR_06300
PFAMsNAD_binding_10
Max annot lvl201174|Actinobacteria
Evalue3.09e-37
EggNOG OGsCOG0702@1|root,COG0702@2|Bacteria,2IGJW@201174|Actinobacteria,4DJ5I@85008|Micromonosporales
DescriptionNmrA-like family
COG categoryGM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6949Ggra6949Gracilaria gracilis GNS1m malegenetig00000115_pilon 284000..284632 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6949.t1.start1Ggra6949.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000115_pilon 284000..284002 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6949.t1.CDS1Ggra6949.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000115_pilon 284000..284632 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6949.t1.exon1Ggra6949.t1.exon1Gracilaria gracilis GNS1m maleexontig00000115_pilon 284000..284632 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6949.t1.stop1Ggra6949.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000115_pilon 284630..284632 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6949.t1Ggra6949.t1Gracilaria gracilis GNS1m malepolypeptidetig00000115_pilon 284000..284632 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6949.t1 ID=Ggra6949.t1|Name=Ggra6949.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=211bp
MRITVFGANGQTGTEIVDQLVQSGHTVTAAVRRPSTVQPREGVDVCKIDL
SDEESILAALKGSDAVISALGTGALRSARKRTSLYSDAVRALRSAMRQLG
MKRIIVLSSSGVDEEDKAPAFYNSIIRRYLMNTYIDMARMETILTESDDL
EWTNVRLSYLVDCKSQPYIVRDKMLDEGNYKIGFKDAADFIAREMLERKW
IQKMPALTYP*
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spliced messenger RNA

>Ggra6949.t1 ID=Ggra6949.t1|Name=Ggra6949.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=633bp|location=Sequence derived from alignment at tig00000115_pilon:284000..284632+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCATCACCGTCTTCGGAGCTAACGGCCAGACAGGCACGGAAATCGT
CGATCAACTCGTACAAAGTGGACACACGGTGACCGCAGCAGTACGTCGCC
CTTCAACCGTTCAACCCAGAGAAGGAGTGGATGTTTGCAAAATAGATCTC
AGCGACGAAGAGTCTATTCTCGCCGCGTTGAAAGGAAGCGATGCGGTCAT
CTCCGCGCTGGGTACAGGAGCCTTACGAAGCGCGCGCAAGCGAACCTCAC
TGTACAGCGATGCTGTTCGAGCGTTAAGATCCGCCATGAGACAATTGGGT
ATGAAAAGAATTATTGTGCTTTCGTCAAGTGGAGTGGATGAAGAGGATAA
AGCGCCTGCTTTTTACAATTCAATTATCCGTAGATATTTGATGAACACTT
ACATTGATATGGCGAGGATGGAAACCATATTGACAGAAAGTGACGATTTG
GAGTGGACCAATGTTCGTTTGTCATATCTTGTGGATTGTAAGTCCCAACC
GTACATTGTAAGAGACAAGATGCTTGATGAAGGCAACTACAAGATTGGGT
TCAAGGATGCAGCCGACTTTATTGCCAGGGAAATGCTTGAGCGCAAATGG
ATTCAGAAAATGCCTGCGCTTACGTATCCGTAA
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protein sequence of Ggra6949.t1

>Ggra6949.t1 ID=Ggra6949.t1|Name=Ggra6949.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=211bp
MRITVFGANGQTGTEIVDQLVQSGHTVTAAVRRPSTVQPREGVDVCKIDL
SDEESILAALKGSDAVISALGTGALRSARKRTSLYSDAVRALRSAMRQLG
MKRIIVLSSSGVDEEDKAPAFYNSIIRRYLMNTYIDMARMETILTESDDL
EWTNVRLSYLVDCKSQPYIVRDKMLDEGNYKIGFKDAADFIAREMLERKW
IQKMPALTYP*
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mRNA from alignment at tig00000115_pilon:284000..284632+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6949.t1 ID=Ggra6949.t1|Name=Ggra6949.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=633bp|location=Sequence derived from alignment at tig00000115_pilon:284000..284632+ (Gracilaria gracilis GNS1m male)
ATGCGCATCACCGTCTTCGGAGCTAACGGCCAGACAGGCACGGAAATCGT
CGATCAACTCGTACAAAGTGGACACACGGTGACCGCAGCAGTACGTCGCC
CTTCAACCGTTCAACCCAGAGAAGGAGTGGATGTTTGCAAAATAGATCTC
AGCGACGAAGAGTCTATTCTCGCCGCGTTGAAAGGAAGCGATGCGGTCAT
CTCCGCGCTGGGTACAGGAGCCTTACGAAGCGCGCGCAAGCGAACCTCAC
TGTACAGCGATGCTGTTCGAGCGTTAAGATCCGCCATGAGACAATTGGGT
ATGAAAAGAATTATTGTGCTTTCGTCAAGTGGAGTGGATGAAGAGGATAA
AGCGCCTGCTTTTTACAATTCAATTATCCGTAGATATTTGATGAACACTT
ACATTGATATGGCGAGGATGGAAACCATATTGACAGAAAGTGACGATTTG
GAGTGGACCAATGTTCGTTTGTCATATCTTGTGGATTGTAAGTCCCAACC
GTACATTGTAAGAGACAAGATGCTTGATGAAGGCAACTACAAGATTGGGT
TCAAGGATGCAGCCGACTTTATTGCCAGGGAAATGCTTGAGCGCAAATGG
ATTCAGAAAATGCCTGCGCTTACGTATCCGTAA
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Coding sequence (CDS) from alignment at tig00000115_pilon:284000..284632+

>Ggra6949.t1 ID=Ggra6949.t1|Name=Ggra6949.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=633bp|location=Sequence derived from alignment at tig00000115_pilon:284000..284632+ (Gracilaria gracilis GNS1m male)
ATGCGCATCACCGTCTTCGGAGCTAACGGCCAGACAGGCACGGAAATCGT
CGATCAACTCGTACAAAGTGGACACACGGTGACCGCAGCAGTACGTCGCC
CTTCAACCGTTCAACCCAGAGAAGGAGTGGATGTTTGCAAAATAGATCTC
AGCGACGAAGAGTCTATTCTCGCCGCGTTGAAAGGAAGCGATGCGGTCAT
CTCCGCGCTGGGTACAGGAGCCTTACGAAGCGCGCGCAAGCGAACCTCAC
TGTACAGCGATGCTGTTCGAGCGTTAAGATCCGCCATGAGACAATTGGGT
ATGAAAAGAATTATTGTGCTTTCGTCAAGTGGAGTGGATGAAGAGGATAA
AGCGCCTGCTTTTTACAATTCAATTATCCGTAGATATTTGATGAACACTT
ACATTGATATGGCGAGGATGGAAACCATATTGACAGAAAGTGACGATTTG
GAGTGGACCAATGTTCGTTTGTCATATCTTGTGGATTGTAAGTCCCAACC
GTACATTGTAAGAGACAAGATGCTTGATGAAGGCAACTACAAGATTGGGT
TCAAGGATGCAGCCGACTTTATTGCCAGGGAAATGCTTGAGCGCAAATGG
ATTCAGAAAATGCCTGCGCTTACGTATCCGTAA
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