Ggra6947.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6947.t1
Unique NameGgra6947.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length394
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000115_piloncontigtig00000115_pilon:276813..278066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28583.AMAG_11711T0
Max annot lvl4751|Fungi
Evalue5.52e-10
EggNOG OGs2E3H1@1|root,2SAJC@2759|Eukaryota,3ARBF@33154|Opisthokonta,3PFVF@4751|Fungi
DescriptionAllomyces macrogynus ATCC 38327
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6947Ggra6947Gracilaria gracilis GNS1m malegenetig00000115_pilon 276813..278066 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6947.t1Ggra6947.t1Gracilaria gracilis GNS1m malepolypeptidetig00000115_pilon 276813..278066 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6947.t1.start1Ggra6947.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000115_pilon 276813..276815 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6947.t1.CDS1Ggra6947.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000115_pilon 276813..276842 +
Ggra6947.t1.CDS2Ggra6947.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000115_pilon 276915..278066 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6947.t1.exon1Ggra6947.t1.exon1Gracilaria gracilis GNS1m maleexontig00000115_pilon 276813..276842 +
Ggra6947.t1.exon2Ggra6947.t1.exon2Gracilaria gracilis GNS1m maleexontig00000115_pilon 276915..278066 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6947.t1.intron1Ggra6947.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000115_pilon 276843..276914 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6947.t1.stop1Ggra6947.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000115_pilon 278064..278066 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6947.t1 ID=Ggra6947.t1|Name=Ggra6947.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=394bp
MTDPQAISPGTCRLGGEPQFGVLNCPGPCDLAAIENTYSYSNHGSPSNPA
RIFKRGEQTTIKYQRNNHGPGGFIRLTLVTPDQIMDKSAHKRNAFHYSCW
GAKPVQAPPNELEKDKFGFTFVGSDGEQHNSPKGYYIADVTIPTCVPDGD
YVMGWVWYGGTGGSIQSNAPHEPVPWGYFGDYWSCSFVRIEGGVPLAPSY
EPVFVNDMGQFSAEGCMSANDEPGICASEPCKVDGSYQKPKSFKNGNKPE
PLTPGSFGVFLDKSFESETPVLTSISPDSNDPETSPVDISPSPVSAQEMN
SILITTPPPVMEIMDTMEENPEHSMGPDHGNFDIMPPLAPEETLPDNSSE
ETIEESEDELPEQRSEESRLDPDFIPTWYNNKFIKNIRKNWRY*
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spliced messenger RNA

>Ggra6947.t1 ID=Ggra6947.t1|Name=Ggra6947.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1182bp|location=Sequence derived from alignment at tig00000115_pilon:276813..278066+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGATCCACAAGCCATTTCTCCCGGAACTTGTCGGCTTGGTGGTGA
ACCACAGTTTGGAGTGTTGAATTGCCCTGGCCCGTGTGACCTTGCCGCGA
TAGAGAATACCTACAGTTATTCGAATCATGGATCTCCGAGTAACCCTGCT
CGAATATTCAAGCGAGGTGAGCAAACAACCATCAAGTATCAACGCAACAA
TCACGGGCCGGGTGGTTTTATTCGCCTTACGCTTGTTACACCGGACCAAA
TAATGGATAAGAGCGCTCACAAGCGAAACGCTTTTCACTACAGCTGCTGG
GGTGCAAAGCCTGTCCAAGCACCGCCGAATGAACTTGAGAAAGACAAGTT
TGGATTCACTTTTGTTGGAAGTGATGGGGAACAGCACAATTCTCCTAAAG
GATACTATATCGCTGATGTCACCATTCCAACATGTGTCCCAGATGGCGAC
TACGTGATGGGCTGGGTCTGGTATGGAGGGACCGGCGGATCAATTCAAAG
TAATGCACCACATGAACCAGTGCCGTGGGGCTACTTTGGTGACTACTGGT
CGTGTTCTTTCGTGCGCATCGAGGGTGGAGTACCACTTGCCCCGTCGTAT
GAGCCCGTCTTTGTCAACGACATGGGTCAGTTCTCCGCCGAAGGATGTAT
GTCCGCAAATGATGAGCCGGGGATTTGTGCAAGCGAACCATGCAAAGTGG
ACGGTTCGTACCAAAAGCCGAAGTCCTTTAAGAACGGAAACAAGCCAGAA
CCATTGACTCCCGGGAGCTTTGGAGTATTTCTCGACAAGAGCTTTGAATC
GGAGACACCAGTTTTGACATCAATTAGTCCCGATTCGAATGATCCAGAGA
CTTCCCCTGTAGACATATCACCTTCTCCAGTGTCGGCTCAGGAGATGAAT
TCTATTCTGATTACGACGCCCCCTCCGGTCATGGAGATTATGGATACGAT
GGAAGAGAATCCAGAGCATAGCATGGGACCCGATCATGGGAATTTCGATA
TTATGCCGCCATTGGCTCCGGAGGAAACCCTGCCAGACAATTCAAGTGAA
GAGACTATTGAGGAGTCTGAGGACGAGCTTCCCGAGCAGAGAAGTGAGGA
GTCCAGATTAGACCCGGATTTCATCCCAACGTGGTACAATAATAAGTTCA
TAAAGAATATCAGGAAGAACTGGCGATATTGA
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protein sequence of Ggra6947.t1

>Ggra6947.t1 ID=Ggra6947.t1|Name=Ggra6947.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=394bp
MTDPQAISPGTCRLGGEPQFGVLNCPGPCDLAAIENTYSYSNHGSPSNPA
RIFKRGEQTTIKYQRNNHGPGGFIRLTLVTPDQIMDKSAHKRNAFHYSCW
GAKPVQAPPNELEKDKFGFTFVGSDGEQHNSPKGYYIADVTIPTCVPDGD
YVMGWVWYGGTGGSIQSNAPHEPVPWGYFGDYWSCSFVRIEGGVPLAPSY
EPVFVNDMGQFSAEGCMSANDEPGICASEPCKVDGSYQKPKSFKNGNKPE
PLTPGSFGVFLDKSFESETPVLTSISPDSNDPETSPVDISPSPVSAQEMN
SILITTPPPVMEIMDTMEENPEHSMGPDHGNFDIMPPLAPEETLPDNSSE
ETIEESEDELPEQRSEESRLDPDFIPTWYNNKFIKNIRKNWRY*
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mRNA from alignment at tig00000115_pilon:276813..278066+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6947.t1 ID=Ggra6947.t1|Name=Ggra6947.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1254bp|location=Sequence derived from alignment at tig00000115_pilon:276813..278066+ (Gracilaria gracilis GNS1m male)
ATGACTGATCCACAAGCCATTTCTCCCGGAGTAAGTTCTTTCGATTTTTT
TTGTGATGGACAGGTGCCCAATCAGTTCTAACATTGCGGCAATCTTTTCT
AGACTTGTCGGCTTGGTGGTGAACCACAGTTTGGAGTGTTGAATTGCCCT
GGCCCGTGTGACCTTGCCGCGATAGAGAATACCTACAGTTATTCGAATCA
TGGATCTCCGAGTAACCCTGCTCGAATATTCAAGCGAGGTGAGCAAACAA
CCATCAAGTATCAACGCAACAATCACGGGCCGGGTGGTTTTATTCGCCTT
ACGCTTGTTACACCGGACCAAATAATGGATAAGAGCGCTCACAAGCGAAA
CGCTTTTCACTACAGCTGCTGGGGTGCAAAGCCTGTCCAAGCACCGCCGA
ATGAACTTGAGAAAGACAAGTTTGGATTCACTTTTGTTGGAAGTGATGGG
GAACAGCACAATTCTCCTAAAGGATACTATATCGCTGATGTCACCATTCC
AACATGTGTCCCAGATGGCGACTACGTGATGGGCTGGGTCTGGTATGGAG
GGACCGGCGGATCAATTCAAAGTAATGCACCACATGAACCAGTGCCGTGG
GGCTACTTTGGTGACTACTGGTCGTGTTCTTTCGTGCGCATCGAGGGTGG
AGTACCACTTGCCCCGTCGTATGAGCCCGTCTTTGTCAACGACATGGGTC
AGTTCTCCGCCGAAGGATGTATGTCCGCAAATGATGAGCCGGGGATTTGT
GCAAGCGAACCATGCAAAGTGGACGGTTCGTACCAAAAGCCGAAGTCCTT
TAAGAACGGAAACAAGCCAGAACCATTGACTCCCGGGAGCTTTGGAGTAT
TTCTCGACAAGAGCTTTGAATCGGAGACACCAGTTTTGACATCAATTAGT
CCCGATTCGAATGATCCAGAGACTTCCCCTGTAGACATATCACCTTCTCC
AGTGTCGGCTCAGGAGATGAATTCTATTCTGATTACGACGCCCCCTCCGG
TCATGGAGATTATGGATACGATGGAAGAGAATCCAGAGCATAGCATGGGA
CCCGATCATGGGAATTTCGATATTATGCCGCCATTGGCTCCGGAGGAAAC
CCTGCCAGACAATTCAAGTGAAGAGACTATTGAGGAGTCTGAGGACGAGC
TTCCCGAGCAGAGAAGTGAGGAGTCCAGATTAGACCCGGATTTCATCCCA
ACGTGGTACAATAATAAGTTCATAAAGAATATCAGGAAGAACTGGCGATA
TTGA
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Coding sequence (CDS) from alignment at tig00000115_pilon:276813..278066+

>Ggra6947.t1 ID=Ggra6947.t1|Name=Ggra6947.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1182bp|location=Sequence derived from alignment at tig00000115_pilon:276813..278066+ (Gracilaria gracilis GNS1m male)
ATGACTGATCCACAAGCCATTTCTCCCGGAACTTGTCGGCTTGGTGGTGA
ACCACAGTTTGGAGTGTTGAATTGCCCTGGCCCGTGTGACCTTGCCGCGA
TAGAGAATACCTACAGTTATTCGAATCATGGATCTCCGAGTAACCCTGCT
CGAATATTCAAGCGAGGTGAGCAAACAACCATCAAGTATCAACGCAACAA
TCACGGGCCGGGTGGTTTTATTCGCCTTACGCTTGTTACACCGGACCAAA
TAATGGATAAGAGCGCTCACAAGCGAAACGCTTTTCACTACAGCTGCTGG
GGTGCAAAGCCTGTCCAAGCACCGCCGAATGAACTTGAGAAAGACAAGTT
TGGATTCACTTTTGTTGGAAGTGATGGGGAACAGCACAATTCTCCTAAAG
GATACTATATCGCTGATGTCACCATTCCAACATGTGTCCCAGATGGCGAC
TACGTGATGGGCTGGGTCTGGTATGGAGGGACCGGCGGATCAATTCAAAG
TAATGCACCACATGAACCAGTGCCGTGGGGCTACTTTGGTGACTACTGGT
CGTGTTCTTTCGTGCGCATCGAGGGTGGAGTACCACTTGCCCCGTCGTAT
GAGCCCGTCTTTGTCAACGACATGGGTCAGTTCTCCGCCGAAGGATGTAT
GTCCGCAAATGATGAGCCGGGGATTTGTGCAAGCGAACCATGCAAAGTGG
ACGGTTCGTACCAAAAGCCGAAGTCCTTTAAGAACGGAAACAAGCCAGAA
CCATTGACTCCCGGGAGCTTTGGAGTATTTCTCGACAAGAGCTTTGAATC
GGAGACACCAGTTTTGACATCAATTAGTCCCGATTCGAATGATCCAGAGA
CTTCCCCTGTAGACATATCACCTTCTCCAGTGTCGGCTCAGGAGATGAAT
TCTATTCTGATTACGACGCCCCCTCCGGTCATGGAGATTATGGATACGAT
GGAAGAGAATCCAGAGCATAGCATGGGACCCGATCATGGGAATTTCGATA
TTATGCCGCCATTGGCTCCGGAGGAAACCCTGCCAGACAATTCAAGTGAA
GAGACTATTGAGGAGTCTGAGGACGAGCTTCCCGAGCAGAGAAGTGAGGA
GTCCAGATTAGACCCGGATTTCATCCCAACGTGGTACAATAATAAGTTCA
TAAAGAATATCAGGAAGAACTGGCGATATTGA
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