Ggra6944.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6944.t1
Unique NameGgra6944.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length462
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000115_piloncontigtig00000115_pilon:189343..190728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog29760.VIT_09s0002g02500.t01
Preferred nameUBP6
PFAMsUCH,ubiquitin
Max annot lvl35493|Streptophyta
KEGG koko:K11843
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005911,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0009506,GO:0009987,GO:0016579,GO:0019538,GO:0030054,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0055044,GO:0070646,GO:0070647,GO:0071704,GO:1901564
Evalue1.78e-129
EggNOG OGsKOG1872@1|root,KOG1872@2759|Eukaryota,37HM3@33090|Viridiplantae,3GE0A@35493|Streptophyta
EC3.4.19.12
DescriptionBelongs to the peptidase C19 family
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6944Ggra6944Gracilaria gracilis GNS1m malegenetig00000115_pilon 189343..190728 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6944.t1.stop1Ggra6944.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000115_pilon 189343..189345 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6944.t1.CDS1Ggra6944.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000115_pilon 189343..190728 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6944.t1.exon1Ggra6944.t1.exon1Gracilaria gracilis GNS1m maleexontig00000115_pilon 189343..190728 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6944.t1.start1Ggra6944.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000115_pilon 190726..190728 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6944.t1Ggra6944.t1Gracilaria gracilis GNS1m malepolypeptidetig00000115_pilon 189343..190728 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6944.t1 ID=Ggra6944.t1|Name=Ggra6944.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=462bp
MSGAQVSVRVKWNKHTFADVQIDTQEAPQVFKSQLWTLTGVPPDRQTVLG
FKGGKLRDDADWNAVGLKPNMKIMLLGTPDESRLAPPSELPHVRDDLDPD
APDAAFQPLVIAPPGLANLGNTCYMNATIQCLNAIPPLVNSVAAYAGRTD
AMNPAEKLTAGLRDVFSRLKASNVPSVNPLSFLAVLRQVNPQFAERNNRG
LFMQQDAEECWGEILSRLASSLKLDGSDNQIDNLLAIKMRGEDKCDESDE
SVERHETVRSLKCHISKNVNHLPRGIMEGLEEKIEKRSEALDRSVNWTRK
NRMDSLPPFLVVQFVRFFWKPTEGVKAKILRNVSFPVVLDVFDYCTTELQ
QKLNVKRDEMRAAQDAATSADAAASAAAPADEEVVTAETGNYELCAVLTH
QGRAADAGHYVAWVKDAGSKWYKFDDDKVSIQTEEDVKKLSGGGDWHMAY
MCLYRAKNVPP*
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spliced messenger RNA

>Ggra6944.t1 ID=Ggra6944.t1|Name=Ggra6944.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1386bp|location=Sequence derived from alignment at tig00000115_pilon:189343..190728- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGGGGCACAGGTGTCGGTGCGCGTCAAGTGGAACAAACACACCTT
CGCCGACGTGCAGATCGATACGCAAGAGGCGCCGCAGGTGTTCAAGTCGC
AACTGTGGACTCTCACCGGCGTACCGCCCGATCGCCAGACCGTGCTGGGC
TTCAAGGGCGGCAAGCTGCGCGATGATGCCGACTGGAACGCCGTCGGCCT
CAAGCCCAACATGAAGATCATGCTGCTGGGCACCCCGGACGAGTCGCGCC
TGGCGCCGCCCTCCGAGCTGCCGCACGTGCGCGACGACCTAGATCCCGAC
GCCCCCGACGCCGCCTTCCAGCCGCTCGTCATCGCACCGCCCGGCTTGGC
CAATTTGGGCAATACCTGTTATATGAATGCTACCATCCAGTGTCTCAATG
CTATTCCGCCGCTGGTTAATTCCGTCGCCGCCTACGCTGGACGTACCGAC
GCCATGAACCCGGCCGAGAAACTCACTGCGGGTTTGCGCGATGTGTTCTC
GCGCCTCAAGGCGTCCAACGTTCCGAGCGTCAACCCGCTGTCGTTTCTGG
CTGTTTTGCGACAGGTCAACCCGCAGTTTGCGGAGCGCAACAACCGCGGC
CTCTTCATGCAGCAGGACGCCGAGGAGTGCTGGGGCGAGATTCTGTCTCG
CCTGGCCTCATCGCTCAAGCTCGACGGCAGTGATAATCAAATCGATAACC
TTCTCGCCATCAAGATGCGCGGCGAGGACAAGTGTGACGAGTCCGATGAA
AGCGTCGAGCGTCACGAGACTGTGCGCTCTCTCAAGTGCCACATTTCGAA
GAACGTCAATCACCTACCGCGGGGCATCATGGAAGGGCTGGAGGAGAAGA
TCGAGAAGCGAAGTGAGGCGTTGGACCGATCCGTCAACTGGACGCGCAAG
AACCGCATGGACAGCTTGCCCCCTTTTCTCGTAGTGCAGTTCGTCCGATT
CTTTTGGAAGCCGACCGAAGGCGTAAAGGCAAAGATTCTCCGAAATGTTT
CCTTCCCCGTAGTTCTTGATGTGTTCGACTACTGCACTACCGAGCTTCAG
CAAAAGCTAAATGTCAAGCGCGATGAGATGCGTGCCGCTCAGGACGCTGC
TACTTCTGCTGACGCGGCAGCATCCGCCGCCGCCCCTGCCGATGAGGAGG
TGGTCACTGCCGAAACTGGCAACTACGAGCTTTGCGCCGTGTTAACTCAT
CAAGGCCGAGCAGCTGATGCTGGACATTACGTGGCGTGGGTGAAGGACGC
GGGATCAAAGTGGTACAAGTTTGACGACGACAAGGTCTCCATTCAAACCG
AGGAAGATGTCAAGAAACTTTCTGGTGGAGGTGACTGGCACATGGCGTAC
ATGTGCCTGTACCGAGCAAAGAACGTTCCCCCGTAA
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protein sequence of Ggra6944.t1

>Ggra6944.t1 ID=Ggra6944.t1|Name=Ggra6944.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=462bp
MSGAQVSVRVKWNKHTFADVQIDTQEAPQVFKSQLWTLTGVPPDRQTVLG
FKGGKLRDDADWNAVGLKPNMKIMLLGTPDESRLAPPSELPHVRDDLDPD
APDAAFQPLVIAPPGLANLGNTCYMNATIQCLNAIPPLVNSVAAYAGRTD
AMNPAEKLTAGLRDVFSRLKASNVPSVNPLSFLAVLRQVNPQFAERNNRG
LFMQQDAEECWGEILSRLASSLKLDGSDNQIDNLLAIKMRGEDKCDESDE
SVERHETVRSLKCHISKNVNHLPRGIMEGLEEKIEKRSEALDRSVNWTRK
NRMDSLPPFLVVQFVRFFWKPTEGVKAKILRNVSFPVVLDVFDYCTTELQ
QKLNVKRDEMRAAQDAATSADAAASAAAPADEEVVTAETGNYELCAVLTH
QGRAADAGHYVAWVKDAGSKWYKFDDDKVSIQTEEDVKKLSGGGDWHMAY
MCLYRAKNVPP*
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mRNA from alignment at tig00000115_pilon:189343..190728-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6944.t1 ID=Ggra6944.t1|Name=Ggra6944.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1386bp|location=Sequence derived from alignment at tig00000115_pilon:189343..190728- (Gracilaria gracilis GNS1m male)
ATGAGCGGGGCACAGGTGTCGGTGCGCGTCAAGTGGAACAAACACACCTT
CGCCGACGTGCAGATCGATACGCAAGAGGCGCCGCAGGTGTTCAAGTCGC
AACTGTGGACTCTCACCGGCGTACCGCCCGATCGCCAGACCGTGCTGGGC
TTCAAGGGCGGCAAGCTGCGCGATGATGCCGACTGGAACGCCGTCGGCCT
CAAGCCCAACATGAAGATCATGCTGCTGGGCACCCCGGACGAGTCGCGCC
TGGCGCCGCCCTCCGAGCTGCCGCACGTGCGCGACGACCTAGATCCCGAC
GCCCCCGACGCCGCCTTCCAGCCGCTCGTCATCGCACCGCCCGGCTTGGC
CAATTTGGGCAATACCTGTTATATGAATGCTACCATCCAGTGTCTCAATG
CTATTCCGCCGCTGGTTAATTCCGTCGCCGCCTACGCTGGACGTACCGAC
GCCATGAACCCGGCCGAGAAACTCACTGCGGGTTTGCGCGATGTGTTCTC
GCGCCTCAAGGCGTCCAACGTTCCGAGCGTCAACCCGCTGTCGTTTCTGG
CTGTTTTGCGACAGGTCAACCCGCAGTTTGCGGAGCGCAACAACCGCGGC
CTCTTCATGCAGCAGGACGCCGAGGAGTGCTGGGGCGAGATTCTGTCTCG
CCTGGCCTCATCGCTCAAGCTCGACGGCAGTGATAATCAAATCGATAACC
TTCTCGCCATCAAGATGCGCGGCGAGGACAAGTGTGACGAGTCCGATGAA
AGCGTCGAGCGTCACGAGACTGTGCGCTCTCTCAAGTGCCACATTTCGAA
GAACGTCAATCACCTACCGCGGGGCATCATGGAAGGGCTGGAGGAGAAGA
TCGAGAAGCGAAGTGAGGCGTTGGACCGATCCGTCAACTGGACGCGCAAG
AACCGCATGGACAGCTTGCCCCCTTTTCTCGTAGTGCAGTTCGTCCGATT
CTTTTGGAAGCCGACCGAAGGCGTAAAGGCAAAGATTCTCCGAAATGTTT
CCTTCCCCGTAGTTCTTGATGTGTTCGACTACTGCACTACCGAGCTTCAG
CAAAAGCTAAATGTCAAGCGCGATGAGATGCGTGCCGCTCAGGACGCTGC
TACTTCTGCTGACGCGGCAGCATCCGCCGCCGCCCCTGCCGATGAGGAGG
TGGTCACTGCCGAAACTGGCAACTACGAGCTTTGCGCCGTGTTAACTCAT
CAAGGCCGAGCAGCTGATGCTGGACATTACGTGGCGTGGGTGAAGGACGC
GGGATCAAAGTGGTACAAGTTTGACGACGACAAGGTCTCCATTCAAACCG
AGGAAGATGTCAAGAAACTTTCTGGTGGAGGTGACTGGCACATGGCGTAC
ATGTGCCTGTACCGAGCAAAGAACGTTCCCCCGTAA
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Coding sequence (CDS) from alignment at tig00000115_pilon:189343..190728-

>Ggra6944.t1 ID=Ggra6944.t1|Name=Ggra6944.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1386bp|location=Sequence derived from alignment at tig00000115_pilon:189343..190728- (Gracilaria gracilis GNS1m male)
ATGAGCGGGGCACAGGTGTCGGTGCGCGTCAAGTGGAACAAACACACCTT
CGCCGACGTGCAGATCGATACGCAAGAGGCGCCGCAGGTGTTCAAGTCGC
AACTGTGGACTCTCACCGGCGTACCGCCCGATCGCCAGACCGTGCTGGGC
TTCAAGGGCGGCAAGCTGCGCGATGATGCCGACTGGAACGCCGTCGGCCT
CAAGCCCAACATGAAGATCATGCTGCTGGGCACCCCGGACGAGTCGCGCC
TGGCGCCGCCCTCCGAGCTGCCGCACGTGCGCGACGACCTAGATCCCGAC
GCCCCCGACGCCGCCTTCCAGCCGCTCGTCATCGCACCGCCCGGCTTGGC
CAATTTGGGCAATACCTGTTATATGAATGCTACCATCCAGTGTCTCAATG
CTATTCCGCCGCTGGTTAATTCCGTCGCCGCCTACGCTGGACGTACCGAC
GCCATGAACCCGGCCGAGAAACTCACTGCGGGTTTGCGCGATGTGTTCTC
GCGCCTCAAGGCGTCCAACGTTCCGAGCGTCAACCCGCTGTCGTTTCTGG
CTGTTTTGCGACAGGTCAACCCGCAGTTTGCGGAGCGCAACAACCGCGGC
CTCTTCATGCAGCAGGACGCCGAGGAGTGCTGGGGCGAGATTCTGTCTCG
CCTGGCCTCATCGCTCAAGCTCGACGGCAGTGATAATCAAATCGATAACC
TTCTCGCCATCAAGATGCGCGGCGAGGACAAGTGTGACGAGTCCGATGAA
AGCGTCGAGCGTCACGAGACTGTGCGCTCTCTCAAGTGCCACATTTCGAA
GAACGTCAATCACCTACCGCGGGGCATCATGGAAGGGCTGGAGGAGAAGA
TCGAGAAGCGAAGTGAGGCGTTGGACCGATCCGTCAACTGGACGCGCAAG
AACCGCATGGACAGCTTGCCCCCTTTTCTCGTAGTGCAGTTCGTCCGATT
CTTTTGGAAGCCGACCGAAGGCGTAAAGGCAAAGATTCTCCGAAATGTTT
CCTTCCCCGTAGTTCTTGATGTGTTCGACTACTGCACTACCGAGCTTCAG
CAAAAGCTAAATGTCAAGCGCGATGAGATGCGTGCCGCTCAGGACGCTGC
TACTTCTGCTGACGCGGCAGCATCCGCCGCCGCCCCTGCCGATGAGGAGG
TGGTCACTGCCGAAACTGGCAACTACGAGCTTTGCGCCGTGTTAACTCAT
CAAGGCCGAGCAGCTGATGCTGGACATTACGTGGCGTGGGTGAAGGACGC
GGGATCAAAGTGGTACAAGTTTGACGACGACAAGGTCTCCATTCAAACCG
AGGAAGATGTCAAGAAACTTTCTGGTGGAGGTGACTGGCACATGGCGTAC
ATGTGCCTGTACCGAGCAAAGAACGTTCCCCCGTAA
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