Ggra6931.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6931.t1
Unique NameGgra6931.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length756
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000115_piloncontigtig00000115_pilon:165052..167319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8083.ENSXMAP00000006516
Preferred namePLCD4
PFAMsC2,EF-hand_10,EF-hand_like,PH,PI-PLC-X,PI-PLC-Y
Max annot lvl33208|Metazoa
KEGG rclassRC00017,RC00425
KEGG koko:K05857
KEGG ReactionR03332,R03435,R10952
KEGG Pathwayko00562,ko01100,ko04020,ko04070,ko04919,ko04933,map00562,map01100,map04020,map04070,map04919,map04933
KEGG ModuleM00130
GOsGO:0000003,GO:0003674,GO:0003824,GO:0004435,GO:0004620,GO:0004629,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005886,GO:0006066,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0007154,GO:0007165,GO:0007338,GO:0007340,GO:0008081,GO:0008150,GO:0008152,GO:0009566,GO:0009987,GO:0012505,GO:0016020,GO:0016298,GO:0016787,GO:0016788,GO:0019637,GO:0019751,GO:0019953,GO:0022414,GO:0023052,GO:0031090,GO:0031965,GO:0031967,GO:0031975,GO:0031984,GO:0035556,GO:0042175,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043647,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046486,GO:0046488,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051716,GO:0065007,GO:0071704,GO:0071944,GO:0098827,GO:1901615
Evalue4.86e-76
EggNOG OGsKOG0169@1|root,KOG0169@2759|Eukaryota,38BAR@33154|Opisthokonta,3BDCE@33208|Metazoa,3CRFD@33213|Bilateria,481HT@7711|Chordata,492N0@7742|Vertebrata,49ZFR@7898|Actinopterygii
EC3.1.4.11
Description1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6931Ggra6931Gracilaria gracilis GNS1m malegenetig00000115_pilon 165052..167319 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6931.t1.start1Ggra6931.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000115_pilon 165052..165054 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6931.t1.CDS1Ggra6931.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000115_pilon 165052..167319 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6931.t1.exon1Ggra6931.t1.exon1Gracilaria gracilis GNS1m maleexontig00000115_pilon 165052..167319 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6931.t1.stop1Ggra6931.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000115_pilon 167317..167319 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6931.t1Ggra6931.t1Gracilaria gracilis GNS1m malepolypeptidetig00000115_pilon 165052..167319 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6931.t1 ID=Ggra6931.t1|Name=Ggra6931.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=756bp
MSDVHALVASLPTDVEKLTGSRHWLRRMAKKRRWKRKQLTLTADAVLLYR
DPAATHVKSFVLLPASARPASAQEHIDNRRSHVFVLTAVPLSQVSSLNAD
RHIFYFAIGDAQHAADWISVADSVAAQRVRLTHAPLTPLNAPLLAAWGHV
PRLPLSHIPQVSKALCLKLTVEQFQNTARRAGYPLTGHSVSFADFSKVVF
NLANTQVITSIFQTISTDGKPVGPDQLASLLQCTPSQALELLQQHAATKC
SPQLLVAMLHHPINSIVDPNLVEEPHDMTRPLNEYLISSSHNTYLESDQL
RGDSTAYMYRIVLERGCRCVEIDMWDGDDDNPVVTHGHTMTSEVSLEKVL
NIIREHAFSHDTDFPLILSLENHLSHRQQIKAASLICEILGDYLYRPECA
GMHVDVLPSPEKLKRRVLLKAKTGHSIYIQSRPSELSNMEDDDSDGPEES
PRAVKSRDEEPSSSSSGSEKASKPRPTSKIAEEMSQLVYLAGGNRKILMG
MWSNGVSGTDEFIASSCVSINEKKIAEVWESGTQTVNAIREYNSHGLTRV
YPKGTRVDSSNYTPTLAHHMGCQLVALNWQKHDNGMAVNEARFLANNGCG
YILSETVRQPPDTQKQTLHLQLLSAFMLPKPKSSNNRDTIDPYCVIKLYD
EDFADEDEYCAKRFDSQAKRSNGFSPIWKETALLEVKNRALAVIVLKVYD
HDRTSDDDLVGYCAVPTSLLREGYRCFPLTSKEGEPITLPSTGVRPSVLC
NVKWT*
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spliced messenger RNA

>Ggra6931.t1 ID=Ggra6931.t1|Name=Ggra6931.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2268bp|location=Sequence derived from alignment at tig00000115_pilon:165052..167319+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGACGTGCACGCGCTCGTGGCGTCGCTGCCCACTGACGTTGAGAA
GCTCACCGGCTCGCGCCACTGGTTGCGTCGCATGGCCAAGAAGCGCCGCT
GGAAGCGCAAGCAGCTCACGCTCACAGCCGACGCCGTGCTGCTCTACCGC
GACCCCGCCGCCACCCATGTCAAGTCCTTCGTGCTGCTGCCCGCCTCCGC
CAGGCCCGCCTCCGCGCAGGAGCACATCGACAACCGCCGCTCGCATGTGT
TCGTCCTCACTGCCGTGCCGCTTTCGCAGGTGTCCAGTCTCAACGCCGAT
CGCCACATCTTCTACTTTGCCATTGGAGACGCGCAGCATGCCGCTGACTG
GATCTCCGTCGCCGACAGCGTTGCCGCGCAGCGTGTGCGTCTCACGCACG
CGCCTCTCACGCCGCTCAACGCGCCGCTGCTGGCTGCGTGGGGACATGTT
CCTCGTCTGCCTCTGTCGCACATTCCGCAGGTTTCAAAGGCGCTCTGCCT
CAAGCTCACCGTAGAGCAGTTCCAGAACACTGCTCGCCGAGCGGGTTACC
CTCTCACCGGCCATTCTGTTTCTTTCGCTGACTTCTCCAAAGTCGTTTTT
AACTTAGCTAACACCCAGGTCATCACTTCCATCTTCCAAACCATCTCGAC
CGACGGCAAACCTGTGGGGCCAGACCAGCTAGCGTCATTGTTACAGTGCA
CGCCATCTCAAGCTCTCGAGCTGCTGCAGCAGCACGCCGCAACCAAATGT
TCGCCGCAGCTGTTGGTCGCCATGCTACATCATCCAATCAACTCCATTGT
TGACCCAAATTTGGTCGAGGAACCGCACGACATGACTCGCCCTCTTAACG
AGTACCTCATTTCATCCTCTCACAACACCTATCTCGAATCGGATCAGCTT
CGGGGTGATAGCACAGCTTACATGTATCGTATAGTGCTGGAAAGAGGCTG
TCGGTGCGTCGAAATCGATATGTGGGATGGTGATGATGACAATCCGGTCG
TCACTCATGGCCATACTATGACATCGGAGGTGTCACTCGAAAAGGTTCTC
AACATCATCCGGGAACATGCCTTCTCACACGACACGGACTTTCCTCTCAT
TCTCAGCTTGGAGAACCATCTTAGCCATCGGCAACAAATCAAGGCTGCGT
CGCTCATATGTGAGATACTGGGAGATTACCTCTACAGACCTGAATGTGCC
GGAATGCATGTCGATGTACTTCCGAGTCCCGAGAAGCTTAAAAGGCGCGT
GTTATTGAAGGCTAAGACTGGTCATTCCATATACATTCAATCAAGACCAT
CAGAGCTTTCCAACATGGAGGACGACGACTCAGATGGCCCTGAAGAATCT
CCTAGAGCGGTCAAGTCGAGGGACGAAGAACCTTCTTCGTCATCATCAGG
TTCTGAGAAAGCGTCCAAGCCCCGACCTACGAGCAAGATAGCCGAAGAAA
TGTCACAATTGGTCTATCTTGCGGGTGGCAATCGTAAGATATTAATGGGG
ATGTGGAGCAACGGCGTGTCTGGTACAGATGAATTCATTGCGTCCTCATG
TGTGTCCATCAACGAAAAGAAGATCGCTGAAGTGTGGGAGAGTGGGACTC
AAACCGTCAACGCCATCCGCGAGTATAACTCTCATGGGCTGACAAGAGTG
TATCCGAAAGGCACGAGGGTGGATTCGTCCAATTACACGCCCACGCTTGC
GCACCATATGGGCTGTCAACTCGTTGCTCTCAATTGGCAAAAGCACGACA
ACGGGATGGCTGTTAATGAAGCTCGCTTTCTGGCCAACAATGGATGCGGA
TACATTCTTTCCGAAACGGTGCGTCAACCCCCCGATACTCAGAAGCAGAC
TCTACACTTGCAGCTTCTTTCAGCATTCATGCTTCCGAAGCCAAAGTCAT
CAAATAATCGAGACACAATTGATCCTTACTGTGTGATCAAACTGTACGAC
GAAGACTTTGCTGATGAGGATGAATATTGTGCGAAAAGGTTTGACTCACA
AGCAAAGCGCTCCAATGGATTCTCGCCGATATGGAAGGAAACCGCATTAC
TGGAAGTCAAGAATCGCGCTCTTGCTGTCATTGTACTCAAAGTGTATGAC
CATGATCGCACCTCTGATGACGATTTAGTAGGATACTGCGCAGTACCGAC
ATCGCTTCTACGTGAAGGCTACAGATGCTTCCCGTTGACGTCCAAGGAAG
GTGAGCCGATCACCTTACCTAGTACAGGTGTGCGCCCCTCAGTGCTTTGC
AATGTCAAATGGACTTGA
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protein sequence of Ggra6931.t1

>Ggra6931.t1 ID=Ggra6931.t1|Name=Ggra6931.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=756bp
MSDVHALVASLPTDVEKLTGSRHWLRRMAKKRRWKRKQLTLTADAVLLYR
DPAATHVKSFVLLPASARPASAQEHIDNRRSHVFVLTAVPLSQVSSLNAD
RHIFYFAIGDAQHAADWISVADSVAAQRVRLTHAPLTPLNAPLLAAWGHV
PRLPLSHIPQVSKALCLKLTVEQFQNTARRAGYPLTGHSVSFADFSKVVF
NLANTQVITSIFQTISTDGKPVGPDQLASLLQCTPSQALELLQQHAATKC
SPQLLVAMLHHPINSIVDPNLVEEPHDMTRPLNEYLISSSHNTYLESDQL
RGDSTAYMYRIVLERGCRCVEIDMWDGDDDNPVVTHGHTMTSEVSLEKVL
NIIREHAFSHDTDFPLILSLENHLSHRQQIKAASLICEILGDYLYRPECA
GMHVDVLPSPEKLKRRVLLKAKTGHSIYIQSRPSELSNMEDDDSDGPEES
PRAVKSRDEEPSSSSSGSEKASKPRPTSKIAEEMSQLVYLAGGNRKILMG
MWSNGVSGTDEFIASSCVSINEKKIAEVWESGTQTVNAIREYNSHGLTRV
YPKGTRVDSSNYTPTLAHHMGCQLVALNWQKHDNGMAVNEARFLANNGCG
YILSETVRQPPDTQKQTLHLQLLSAFMLPKPKSSNNRDTIDPYCVIKLYD
EDFADEDEYCAKRFDSQAKRSNGFSPIWKETALLEVKNRALAVIVLKVYD
HDRTSDDDLVGYCAVPTSLLREGYRCFPLTSKEGEPITLPSTGVRPSVLC
NVKWT*
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mRNA from alignment at tig00000115_pilon:165052..167319+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6931.t1 ID=Ggra6931.t1|Name=Ggra6931.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2268bp|location=Sequence derived from alignment at tig00000115_pilon:165052..167319+ (Gracilaria gracilis GNS1m male)
ATGTCCGACGTGCACGCGCTCGTGGCGTCGCTGCCCACTGACGTTGAGAA GCTCACCGGCTCGCGCCACTGGTTGCGTCGCATGGCCAAGAAGCGCCGCT GGAAGCGCAAGCAGCTCACGCTCACAGCCGACGCCGTGCTGCTCTACCGC GACCCCGCCGCCACCCATGTCAAGTCCTTCGTGCTGCTGCCCGCCTCCGC CAGGCCCGCCTCCGCGCAGGAGCACATCGACAACCGCCGCTCGCATGTGT TCGTCCTCACTGCCGTGCCGCTTTCGCAGGTGTCCAGTCTCAACGCCGAT CGCCACATCTTCTACTTTGCCATTGGAGACGCGCAGCATGCCGCTGACTG GATCTCCGTCGCCGACAGCGTTGCCGCGCAGCGTGTGCGTCTCACGCACG CGCCTCTCACGCCGCTCAACGCGCCGCTGCTGGCTGCGTGGGGACATGTT CCTCGTCTGCCTCTGTCGCACATTCCGCAGGTTTCAAAGGCGCTCTGCCT CAAGCTCACCGTAGAGCAGTTCCAGAACACTGCTCGCCGAGCGGGTTACC CTCTCACCGGCCATTCTGTTTCTTTCGCTGACTTCTCCAAAGTCGTTTTT AACTTAGCTAACACCCAGGTCATCACTTCCATCTTCCAAACCATCTCGAC CGACGGCAAACCTGTGGGGCCAGACCAGCTAGCGTCATTGTTACAGTGCA CGCCATCTCAAGCTCTCGAGCTGCTGCAGCAGCACGCCGCAACCAAATGT TCGCCGCAGCTGTTGGTCGCCATGCTACATCATCCAATCAACTCCATTGT TGACCCAAATTTGGTCGAGGAACCGCACGACATGACTCGCCCTCTTAACG AGTACCTCATTTCATCCTCTCACAACACCTATCTCGAATCGGATCAGCTT CGGGGTGATAGCACAGCTTACATGTATCGTATAGTGCTGGAAAGAGGCTG TCGGTGCGTCGAAATCGATATGTGGGATGGTGATGATGACAATCCGGTCG TCACTCATGGCCATACTATGACATCGGAGGTGTCACTCGAAAAGGTTCTC AACATCATCCGGGAACATGCCTTCTCACACGACACGGACTTTCCTCTCAT TCTCAGCTTGGAGAACCATCTTAGCCATCGGCAACAAATCAAGGCTGCGT CGCTCATATGTGAGATACTGGGAGATTACCTCTACAGACCTGAATGTGCC GGAATGCATGTCGATGTACTTCCGAGTCCCGAGAAGCTTAAAAGGCGCGT GTTATTGAAGGCTAAGACTGGTCATTCCATATACATTCAATCAAGACCAT CAGAGCTTTCCAACATGGAGGACGACGACTCAGATGGCCCTGAAGAATCT CCTAGAGCGGTCAAGTCGAGGGACGAAGAACCTTCTTCGTCATCATCAGG TTCTGAGAAAGCGTCCAAGCCCCGACCTACGAGCAAGATAGCCGAAGAAA TGTCACAATTGGTCTATCTTGCGGGTGGCAATCGTAAGATATTAATGGGG ATGTGGAGCAACGGCGTGTCTGGTACAGATGAATTCATTGCGTCCTCATG TGTGTCCATCAACGAAAAGAAGATCGCTGAAGTGTGGGAGAGTGGGACTC AAACCGTCAACGCCATCCGCGAGTATAACTCTCATGGGCTGACAAGAGTG TATCCGAAAGGCACGAGGGTGGATTCGTCCAATTACACGCCCACGCTTGC GCACCATATGGGCTGTCAACTCGTTGCTCTCAATTGGCAAAAGCACGACA ACGGGATGGCTGTTAATGAAGCTCGCTTTCTGGCCAACAATGGATGCGGA TACATTCTTTCCGAAACGGTGCGTCAACCCCCCGATACTCAGAAGCAGAC TCTACACTTGCAGCTTCTTTCAGCATTCATGCTTCCGAAGCCAAAGTCAT CAAATAATCGAGACACAATTGATCCTTACTGTGTGATCAAACTGTACGAC GAAGACTTTGCTGATGAGGATGAATATTGTGCGAAAAGGTTTGACTCACA AGCAAAGCGCTCCAATGGATTCTCGCCGATATGGAAGGAAACCGCATTAC TGGAAGTCAAGAATCGCGCTCTTGCTGTCATTGTACTCAAAGTGTATGAC CATGATCGCACCTCTGATGACGATTTAGTAGGATACTGCGCAGTACCGAC ATCGCTTCTACGTGAAGGCTACAGATGCTTCCCGTTGACGTCCAAGGAAG GTGAGCCGATCACCTTACCTAGTACAGGTGTGCGCCCCTCAGTGCTTTGC AATGTCAAATGGACTTGA
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Coding sequence (CDS) from alignment at tig00000115_pilon:165052..167319+

>Ggra6931.t1 ID=Ggra6931.t1|Name=Ggra6931.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2268bp|location=Sequence derived from alignment at tig00000115_pilon:165052..167319+ (Gracilaria gracilis GNS1m male)
ATGTCCGACGTGCACGCGCTCGTGGCGTCGCTGCCCACTGACGTTGAGAA
GCTCACCGGCTCGCGCCACTGGTTGCGTCGCATGGCCAAGAAGCGCCGCT
GGAAGCGCAAGCAGCTCACGCTCACAGCCGACGCCGTGCTGCTCTACCGC
GACCCCGCCGCCACCCATGTCAAGTCCTTCGTGCTGCTGCCCGCCTCCGC
CAGGCCCGCCTCCGCGCAGGAGCACATCGACAACCGCCGCTCGCATGTGT
TCGTCCTCACTGCCGTGCCGCTTTCGCAGGTGTCCAGTCTCAACGCCGAT
CGCCACATCTTCTACTTTGCCATTGGAGACGCGCAGCATGCCGCTGACTG
GATCTCCGTCGCCGACAGCGTTGCCGCGCAGCGTGTGCGTCTCACGCACG
CGCCTCTCACGCCGCTCAACGCGCCGCTGCTGGCTGCGTGGGGACATGTT
CCTCGTCTGCCTCTGTCGCACATTCCGCAGGTTTCAAAGGCGCTCTGCCT
CAAGCTCACCGTAGAGCAGTTCCAGAACACTGCTCGCCGAGCGGGTTACC
CTCTCACCGGCCATTCTGTTTCTTTCGCTGACTTCTCCAAAGTCGTTTTT
AACTTAGCTAACACCCAGGTCATCACTTCCATCTTCCAAACCATCTCGAC
CGACGGCAAACCTGTGGGGCCAGACCAGCTAGCGTCATTGTTACAGTGCA
CGCCATCTCAAGCTCTCGAGCTGCTGCAGCAGCACGCCGCAACCAAATGT
TCGCCGCAGCTGTTGGTCGCCATGCTACATCATCCAATCAACTCCATTGT
TGACCCAAATTTGGTCGAGGAACCGCACGACATGACTCGCCCTCTTAACG
AGTACCTCATTTCATCCTCTCACAACACCTATCTCGAATCGGATCAGCTT
CGGGGTGATAGCACAGCTTACATGTATCGTATAGTGCTGGAAAGAGGCTG
TCGGTGCGTCGAAATCGATATGTGGGATGGTGATGATGACAATCCGGTCG
TCACTCATGGCCATACTATGACATCGGAGGTGTCACTCGAAAAGGTTCTC
AACATCATCCGGGAACATGCCTTCTCACACGACACGGACTTTCCTCTCAT
TCTCAGCTTGGAGAACCATCTTAGCCATCGGCAACAAATCAAGGCTGCGT
CGCTCATATGTGAGATACTGGGAGATTACCTCTACAGACCTGAATGTGCC
GGAATGCATGTCGATGTACTTCCGAGTCCCGAGAAGCTTAAAAGGCGCGT
GTTATTGAAGGCTAAGACTGGTCATTCCATATACATTCAATCAAGACCAT
CAGAGCTTTCCAACATGGAGGACGACGACTCAGATGGCCCTGAAGAATCT
CCTAGAGCGGTCAAGTCGAGGGACGAAGAACCTTCTTCGTCATCATCAGG
TTCTGAGAAAGCGTCCAAGCCCCGACCTACGAGCAAGATAGCCGAAGAAA
TGTCACAATTGGTCTATCTTGCGGGTGGCAATCGTAAGATATTAATGGGG
ATGTGGAGCAACGGCGTGTCTGGTACAGATGAATTCATTGCGTCCTCATG
TGTGTCCATCAACGAAAAGAAGATCGCTGAAGTGTGGGAGAGTGGGACTC
AAACCGTCAACGCCATCCGCGAGTATAACTCTCATGGGCTGACAAGAGTG
TATCCGAAAGGCACGAGGGTGGATTCGTCCAATTACACGCCCACGCTTGC
GCACCATATGGGCTGTCAACTCGTTGCTCTCAATTGGCAAAAGCACGACA
ACGGGATGGCTGTTAATGAAGCTCGCTTTCTGGCCAACAATGGATGCGGA
TACATTCTTTCCGAAACGGTGCGTCAACCCCCCGATACTCAGAAGCAGAC
TCTACACTTGCAGCTTCTTTCAGCATTCATGCTTCCGAAGCCAAAGTCAT
CAAATAATCGAGACACAATTGATCCTTACTGTGTGATCAAACTGTACGAC
GAAGACTTTGCTGATGAGGATGAATATTGTGCGAAAAGGTTTGACTCACA
AGCAAAGCGCTCCAATGGATTCTCGCCGATATGGAAGGAAACCGCATTAC
TGGAAGTCAAGAATCGCGCTCTTGCTGTCATTGTACTCAAAGTGTATGAC
CATGATCGCACCTCTGATGACGATTTAGTAGGATACTGCGCAGTACCGAC
ATCGCTTCTACGTGAAGGCTACAGATGCTTCCCGTTGACGTCCAAGGAAG
GTGAGCCGATCACCTTACCTAGTACAGGTGTGCGCCCCTCAGTGCTTTGC
AATGTCAAATGGACTTGA
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