Ggra6928.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6928.t1
Unique NameGgra6928.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length546
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000115_piloncontigtig00000115_pilon:78160..79797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5016.M2VAB3
Preferred namePOL2
PFAMsDNA_pol_B,DNA_pol_B_exo1,DUF1744
Max annot lvl4751|Fungi
KEGG rclassRC02795
KEGG koko:K02324
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map05166
KEGG ModuleM00263
GOsGO:0000003,GO:0000070,GO:0000075,GO:0000076,GO:0000077,GO:0000228,GO:0000278,GO:0000280,GO:0000726,GO:0000731,GO:0000781,GO:0000784,GO:0000819,GO:0001672,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003723,GO:0003729,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006271,GO:0006272,GO:0006279,GO:0006281,GO:0006284,GO:0006287,GO:0006289,GO:0006297,GO:0006301,GO:0006302,GO:0006303,GO:0006310,GO:0006325,GO:0006342,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007093,GO:0007346,GO:0008150,GO:0008152,GO:0008296,GO:0008297,GO:0008310,GO:0008408,GO:0008622,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010389,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010638,GO:0010847,GO:0010948,GO:0010964,GO:0010972,GO:0016043,GO:0016070,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019985,GO:0022402,GO:0022414,GO:0022616,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031570,GO:0031573,GO:0031935,GO:0031937,GO:0031974,GO:0031981,GO:0032991,GO:0033043,GO:0033044,GO:0033260,GO:0033314,GO:0033554,GO:0034061,GO:0034401,GO:0034641,GO:0034645,GO:0034654,GO:0035822,GO:0040029,GO:0042276,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043596,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044786,GO:0044818,GO:0045004,GO:0045005,GO:0045786,GO:0045814,GO:0045892,GO:0045930,GO:0045934,GO:0046483,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051716,GO:0051726,GO:0060255,GO:0060966,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070828,GO:0070868,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090052,GO:0090053,GO:0090230,GO:0090304,GO:0090305,GO:0097159,GO:0097549,GO:0098687,GO:0098813,GO:0140014,GO:0140097,GO:1900049,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902275,GO:1902292,GO:1902296,GO:1902315,GO:1902319,GO:1902494,GO:1902679,GO:1902749,GO:1902750,GO:1902969,GO:1902975,GO:1902983,GO:1903046,GO:1903047,GO:1903097,GO:1903460,GO:1903506,GO:1903507,GO:1905269,GO:1990234,GO:2000112,GO:2000113,GO:2001141,GO:2001252
Evalue7.96e-32
EggNOG OGsCOG0417@1|root,KOG1798@2759|Eukaryota,38CFB@33154|Opisthokonta,3NV4K@4751|Fungi,3QNEF@4890|Ascomycota,1ZZMR@147541|Dothideomycetes,4KBJ7@92860|Pleosporales
EC2.7.7.7
DescriptionDUF1744
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6928Ggra6928Gracilaria gracilis GNS1m malegenetig00000115_pilon 78160..79797 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6928.t1.start1Ggra6928.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000115_pilon 78160..78162 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6928.t1.CDS1Ggra6928.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000115_pilon 78160..79797 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6928.t1.exon1Ggra6928.t1.exon1Gracilaria gracilis GNS1m maleexontig00000115_pilon 78160..79797 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6928.t1.stop1Ggra6928.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000115_pilon 79795..79797 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6928.t1Ggra6928.t1Gracilaria gracilis GNS1m malepolypeptidetig00000115_pilon 78160..79797 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6928.t1 ID=Ggra6928.t1|Name=Ggra6928.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=546bp
MDYAPANFIIDLRRTTTPYDFFKKKIVPLLGPGIYWQTVAVSHVVESLGE
FRLWVLPVKKESDRFETLQLYSIPLHVKRVLYLNSKTKDAQYIPEASCET
VRAVILPRSRAVPYLFRVQVCEKRFQQTDKDFTSRLTDAGTVDSVYGTQK
PLDCETIVTLGTLCAPRKAAVTNMGTKKLLRKGLSSDEIVPKNPEAVPYL
QDKRSNSSEPVLHQALLYGSQAIDGTSRAMYAFIASDAKVAHIIVVTPAE
SVALNVNRIWRNILRARRGQEERNEGESSERSWLSMDSKFTAIAVGTRRE
VWAELHRLPANLRDGPPLSDKLRSTGLKTILLAQGPAMDTAIATSAISGS
MERKVDLRRKHSTLQEYILATRSYPVVRVPINAENGNYLPVGWEHKAATT
AFSKYVEITDWLRNQLLLSRFAGIPIGNMSLTDVHAQALDVLVGRELINR
DHILWASTSSQPDLGGLEDDDCNLQNEMVSGPGVTNAGSFRTICIDTELP
NLSIAIILSSSYVNQVEGTVLAFDAAADSSLKAMKNAASSFFGPS*
back to top

spliced messenger RNA

>Ggra6928.t1 ID=Ggra6928.t1|Name=Ggra6928.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1638bp|location=Sequence derived from alignment at tig00000115_pilon:78160..79797+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTATGCTCCTGCGAATTTCATCATAGATCTTCGAAGAACTACAAC
GCCGTATGACTTCTTCAAAAAGAAAATTGTCCCACTTCTTGGACCTGGGA
TATACTGGCAGACTGTCGCGGTATCGCATGTGGTGGAATCTCTTGGAGAA
TTTCGACTGTGGGTTCTCCCGGTCAAGAAAGAATCAGATCGGTTTGAAAC
TCTTCAACTCTACAGTATTCCGCTGCATGTGAAGAGAGTTCTTTATCTGA
ACTCAAAGACCAAGGATGCACAGTATATACCAGAAGCTTCTTGTGAAACA
GTCCGTGCAGTTATCTTGCCAAGATCCCGCGCAGTTCCATATCTTTTCCG
TGTCCAGGTCTGTGAGAAGCGCTTCCAGCAAACTGACAAAGATTTTACTT
CTCGTCTAACAGACGCTGGAACTGTTGACAGCGTTTACGGTACGCAAAAG
CCATTGGATTGTGAAACCATCGTAACCCTCGGTACTCTATGCGCTCCACG
CAAAGCTGCTGTTACCAACATGGGCACCAAGAAGCTTTTGAGGAAAGGAT
TGAGTTCGGATGAAATCGTCCCGAAGAACCCCGAAGCGGTCCCATATCTT
CAAGATAAGCGAAGCAACTCTTCCGAACCTGTGCTACACCAAGCACTTCT
TTACGGTTCGCAAGCTATAGATGGAACCTCACGTGCTATGTACGCGTTTA
TTGCTTCTGATGCGAAGGTTGCGCACATCATTGTCGTCACGCCGGCAGAG
TCCGTGGCTCTCAATGTGAATAGAATATGGAGGAACATTCTAAGGGCCCG
AAGAGGACAAGAGGAGCGTAATGAGGGAGAATCTTCGGAGAGATCCTGGC
TGTCGATGGACTCTAAATTCACAGCGATTGCAGTGGGTACTCGGAGGGAG
GTATGGGCAGAGCTACATAGGTTACCGGCAAATTTGCGAGACGGTCCACC
ACTATCTGACAAACTGCGTTCTACAGGCTTGAAGACCATCCTATTGGCGC
AAGGGCCTGCAATGGACACGGCGATTGCCACAAGCGCCATTTCCGGTTCA
ATGGAGAGGAAAGTGGATCTTCGTAGGAAGCATTCCACGCTTCAAGAATA
TATCCTAGCTACTCGGAGTTACCCCGTAGTTCGGGTTCCAATCAATGCAG
AAAACGGCAACTACTTGCCAGTTGGATGGGAGCATAAGGCTGCAACCACG
GCATTTTCAAAGTATGTGGAAATCACAGATTGGCTCCGCAATCAGCTGCT
TCTTTCACGATTTGCTGGCATCCCTATCGGAAACATGTCATTGACGGATG
TACACGCCCAGGCTCTTGACGTGCTTGTTGGGCGAGAGCTTATCAATCGG
GATCATATTCTCTGGGCATCTACCTCTTCTCAACCTGATCTTGGTGGGCT
TGAGGACGATGATTGCAATTTGCAAAACGAGATGGTATCAGGCCCGGGGG
TTACAAACGCTGGATCCTTCCGCACAATTTGCATTGACACGGAATTGCCC
AATCTGTCTATCGCCATTATCCTGTCTTCTTCATATGTGAATCAAGTCGA
AGGCACTGTTCTTGCGTTTGATGCCGCTGCGGATTCAAGTTTGAAGGCGA
TGAAGAATGCTGCTTCATCATTTTTTGGACCAAGTTAG
back to top

protein sequence of Ggra6928.t1

>Ggra6928.t1 ID=Ggra6928.t1|Name=Ggra6928.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=546bp
MDYAPANFIIDLRRTTTPYDFFKKKIVPLLGPGIYWQTVAVSHVVESLGE
FRLWVLPVKKESDRFETLQLYSIPLHVKRVLYLNSKTKDAQYIPEASCET
VRAVILPRSRAVPYLFRVQVCEKRFQQTDKDFTSRLTDAGTVDSVYGTQK
PLDCETIVTLGTLCAPRKAAVTNMGTKKLLRKGLSSDEIVPKNPEAVPYL
QDKRSNSSEPVLHQALLYGSQAIDGTSRAMYAFIASDAKVAHIIVVTPAE
SVALNVNRIWRNILRARRGQEERNEGESSERSWLSMDSKFTAIAVGTRRE
VWAELHRLPANLRDGPPLSDKLRSTGLKTILLAQGPAMDTAIATSAISGS
MERKVDLRRKHSTLQEYILATRSYPVVRVPINAENGNYLPVGWEHKAATT
AFSKYVEITDWLRNQLLLSRFAGIPIGNMSLTDVHAQALDVLVGRELINR
DHILWASTSSQPDLGGLEDDDCNLQNEMVSGPGVTNAGSFRTICIDTELP
NLSIAIILSSSYVNQVEGTVLAFDAAADSSLKAMKNAASSFFGPS*
back to top

mRNA from alignment at tig00000115_pilon:78160..79797+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6928.t1 ID=Ggra6928.t1|Name=Ggra6928.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1638bp|location=Sequence derived from alignment at tig00000115_pilon:78160..79797+ (Gracilaria gracilis GNS1m male)
ATGGACTATGCTCCTGCGAATTTCATCATAGATCTTCGAAGAACTACAAC
GCCGTATGACTTCTTCAAAAAGAAAATTGTCCCACTTCTTGGACCTGGGA
TATACTGGCAGACTGTCGCGGTATCGCATGTGGTGGAATCTCTTGGAGAA
TTTCGACTGTGGGTTCTCCCGGTCAAGAAAGAATCAGATCGGTTTGAAAC
TCTTCAACTCTACAGTATTCCGCTGCATGTGAAGAGAGTTCTTTATCTGA
ACTCAAAGACCAAGGATGCACAGTATATACCAGAAGCTTCTTGTGAAACA
GTCCGTGCAGTTATCTTGCCAAGATCCCGCGCAGTTCCATATCTTTTCCG
TGTCCAGGTCTGTGAGAAGCGCTTCCAGCAAACTGACAAAGATTTTACTT
CTCGTCTAACAGACGCTGGAACTGTTGACAGCGTTTACGGTACGCAAAAG
CCATTGGATTGTGAAACCATCGTAACCCTCGGTACTCTATGCGCTCCACG
CAAAGCTGCTGTTACCAACATGGGCACCAAGAAGCTTTTGAGGAAAGGAT
TGAGTTCGGATGAAATCGTCCCGAAGAACCCCGAAGCGGTCCCATATCTT
CAAGATAAGCGAAGCAACTCTTCCGAACCTGTGCTACACCAAGCACTTCT
TTACGGTTCGCAAGCTATAGATGGAACCTCACGTGCTATGTACGCGTTTA
TTGCTTCTGATGCGAAGGTTGCGCACATCATTGTCGTCACGCCGGCAGAG
TCCGTGGCTCTCAATGTGAATAGAATATGGAGGAACATTCTAAGGGCCCG
AAGAGGACAAGAGGAGCGTAATGAGGGAGAATCTTCGGAGAGATCCTGGC
TGTCGATGGACTCTAAATTCACAGCGATTGCAGTGGGTACTCGGAGGGAG
GTATGGGCAGAGCTACATAGGTTACCGGCAAATTTGCGAGACGGTCCACC
ACTATCTGACAAACTGCGTTCTACAGGCTTGAAGACCATCCTATTGGCGC
AAGGGCCTGCAATGGACACGGCGATTGCCACAAGCGCCATTTCCGGTTCA
ATGGAGAGGAAAGTGGATCTTCGTAGGAAGCATTCCACGCTTCAAGAATA
TATCCTAGCTACTCGGAGTTACCCCGTAGTTCGGGTTCCAATCAATGCAG
AAAACGGCAACTACTTGCCAGTTGGATGGGAGCATAAGGCTGCAACCACG
GCATTTTCAAAGTATGTGGAAATCACAGATTGGCTCCGCAATCAGCTGCT
TCTTTCACGATTTGCTGGCATCCCTATCGGAAACATGTCATTGACGGATG
TACACGCCCAGGCTCTTGACGTGCTTGTTGGGCGAGAGCTTATCAATCGG
GATCATATTCTCTGGGCATCTACCTCTTCTCAACCTGATCTTGGTGGGCT
TGAGGACGATGATTGCAATTTGCAAAACGAGATGGTATCAGGCCCGGGGG
TTACAAACGCTGGATCCTTCCGCACAATTTGCATTGACACGGAATTGCCC
AATCTGTCTATCGCCATTATCCTGTCTTCTTCATATGTGAATCAAGTCGA
AGGCACTGTTCTTGCGTTTGATGCCGCTGCGGATTCAAGTTTGAAGGCGA
TGAAGAATGCTGCTTCATCATTTTTTGGACCAAGTTAG
back to top

Coding sequence (CDS) from alignment at tig00000115_pilon:78160..79797+

>Ggra6928.t1 ID=Ggra6928.t1|Name=Ggra6928.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1638bp|location=Sequence derived from alignment at tig00000115_pilon:78160..79797+ (Gracilaria gracilis GNS1m male)
ATGGACTATGCTCCTGCGAATTTCATCATAGATCTTCGAAGAACTACAAC
GCCGTATGACTTCTTCAAAAAGAAAATTGTCCCACTTCTTGGACCTGGGA
TATACTGGCAGACTGTCGCGGTATCGCATGTGGTGGAATCTCTTGGAGAA
TTTCGACTGTGGGTTCTCCCGGTCAAGAAAGAATCAGATCGGTTTGAAAC
TCTTCAACTCTACAGTATTCCGCTGCATGTGAAGAGAGTTCTTTATCTGA
ACTCAAAGACCAAGGATGCACAGTATATACCAGAAGCTTCTTGTGAAACA
GTCCGTGCAGTTATCTTGCCAAGATCCCGCGCAGTTCCATATCTTTTCCG
TGTCCAGGTCTGTGAGAAGCGCTTCCAGCAAACTGACAAAGATTTTACTT
CTCGTCTAACAGACGCTGGAACTGTTGACAGCGTTTACGGTACGCAAAAG
CCATTGGATTGTGAAACCATCGTAACCCTCGGTACTCTATGCGCTCCACG
CAAAGCTGCTGTTACCAACATGGGCACCAAGAAGCTTTTGAGGAAAGGAT
TGAGTTCGGATGAAATCGTCCCGAAGAACCCCGAAGCGGTCCCATATCTT
CAAGATAAGCGAAGCAACTCTTCCGAACCTGTGCTACACCAAGCACTTCT
TTACGGTTCGCAAGCTATAGATGGAACCTCACGTGCTATGTACGCGTTTA
TTGCTTCTGATGCGAAGGTTGCGCACATCATTGTCGTCACGCCGGCAGAG
TCCGTGGCTCTCAATGTGAATAGAATATGGAGGAACATTCTAAGGGCCCG
AAGAGGACAAGAGGAGCGTAATGAGGGAGAATCTTCGGAGAGATCCTGGC
TGTCGATGGACTCTAAATTCACAGCGATTGCAGTGGGTACTCGGAGGGAG
GTATGGGCAGAGCTACATAGGTTACCGGCAAATTTGCGAGACGGTCCACC
ACTATCTGACAAACTGCGTTCTACAGGCTTGAAGACCATCCTATTGGCGC
AAGGGCCTGCAATGGACACGGCGATTGCCACAAGCGCCATTTCCGGTTCA
ATGGAGAGGAAAGTGGATCTTCGTAGGAAGCATTCCACGCTTCAAGAATA
TATCCTAGCTACTCGGAGTTACCCCGTAGTTCGGGTTCCAATCAATGCAG
AAAACGGCAACTACTTGCCAGTTGGATGGGAGCATAAGGCTGCAACCACG
GCATTTTCAAAGTATGTGGAAATCACAGATTGGCTCCGCAATCAGCTGCT
TCTTTCACGATTTGCTGGCATCCCTATCGGAAACATGTCATTGACGGATG
TACACGCCCAGGCTCTTGACGTGCTTGTTGGGCGAGAGCTTATCAATCGG
GATCATATTCTCTGGGCATCTACCTCTTCTCAACCTGATCTTGGTGGGCT
TGAGGACGATGATTGCAATTTGCAAAACGAGATGGTATCAGGCCCGGGGG
TTACAAACGCTGGATCCTTCCGCACAATTTGCATTGACACGGAATTGCCC
AATCTGTCTATCGCCATTATCCTGTCTTCTTCATATGTGAATCAAGTCGA
AGGCACTGTTCTTGCGTTTGATGCCGCTGCGGATTCAAGTTTGAAGGCGA
TGAAGAATGCTGCTTCATCATTTTTTGGACCAAGTTAG
back to top