Ggra6916.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6916.t1
Unique Name	Ggra6916.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	509

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000144_pilon	contig	tig00000144_pilon:198254..199780 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1453501.JELR01000002_gene98
Max annot lvl	1236\|Gammaproteobacteria
Evalue	5.26e-37
EggNOG OGs	COG2931@1\|root,COG2931@2\|Bacteria,1QX4P@1224\|Proteobacteria,1T5MB@1236\|Gammaproteobacteria
Description	calcium- and calmodulin-responsive adenylate cyclase activity
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6916	Ggra6916	Gracilaria gracilis GNS1m male	gene	tig00000144_pilon 198254..199780 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6916.t1.start1	Ggra6916.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000144_pilon 198254..198256 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6916.t1.CDS1	Ggra6916.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000144_pilon 198254..199780 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6916.t1.exon1	Ggra6916.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000144_pilon 198254..199780 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6916.t1.stop1	Ggra6916.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000144_pilon 199778..199780 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6916.t1	Ggra6916.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000144_pilon 198254..199780 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000144_pilon:198254..199780+
coding sequence from alignment at tig00000144_pilon:198254..199780+

mRNA sequence

>Ggra6916.t1 ID=Ggra6916.t1|Name=Ggra6916.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=509bp
MGRFFISFFVFIVFLSSARSQNELSTKQLVEALTIPLVGTNELIAVLFPN
EVLRMETPIAVRYALFFVVSIHEYVSACHPVALSFLGVRHSIPSRFCSSP
LSLAIIERQILYRLIESEFPLEAPRYAAILQRFGINALDDSTDTDTEVGW
ANVVSKGLVEYFANDGWNSLGDLSRKDYLAPFEDPSGYEPQNPANLSPRK
LLKPLRWQPLTQQSDFRGRFATQVHVAPHLGVTAKPHVIGERELRSRKVP
PVYDTPNRRKSIGRKDIQKVNKFITDLFYLSRSVNEEQLALAYWWENKFL
SLGFFILFYGTRLNLTNVTLSRLFLGEMMAQHDAVLLAWKEKRRYDYVRP
QTLIRRVLKGRKVRAFRGFGKGVGLVSAEEWEPVLRTQSHSEYPSGSAAI
CTASLEHLQVALSSADINANVSIPKFELNLPQGVLLSPITSNITISFESL
KAASDSCGFSRLTSGVHFAPSVPAGSRLTTGVGEAAYKHVIDLYEGKVPE
FCTRCIRD*

spliced messenger RNA

>Ggra6916.t1 ID=Ggra6916.t1|Name=Ggra6916.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1527bp|location=Sequence derived from alignment at tig00000144_pilon:198254..199780+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCCGTTTCTTCATCTCTTTCTTCGTGTTCATTGTATTCCTCTCCTC
GGCCAGATCGCAGAATGAATTATCAACAAAGCAGCTGGTTGAGGCGCTCA
CCATTCCCTTGGTAGGAACCAATGAGCTTATCGCAGTTCTATTCCCTAAT
GAAGTGTTACGCATGGAAACACCGATCGCCGTCCGATATGCACTGTTCTT
CGTGGTCTCTATTCATGAATATGTATCCGCTTGCCATCCCGTCGCATTAT
CGTTCCTGGGTGTGCGTCACTCCATACCTTCTCGCTTCTGTTCGTCACCG
CTCTCTCTAGCAATCATCGAACGCCAAATACTTTATCGTCTGATCGAGTC
AGAGTTCCCGTTGGAGGCGCCGCGATATGCAGCCATTTTGCAACGTTTCG
GGATAAACGCATTGGACGATTCCACCGACACTGACACTGAAGTGGGTTGG
GCAAACGTCGTCTCCAAGGGGCTGGTGGAATACTTTGCCAATGATGGTTG
GAACTCTCTTGGAGATCTATCAAGGAAGGACTACCTTGCACCATTTGAAG
ATCCTAGTGGCTACGAACCACAAAACCCAGCAAATTTGTCTCCTAGGAAG
CTTCTGAAACCATTGCGATGGCAGCCACTGACTCAACAGTCTGACTTCCG
TGGCAGGTTTGCCACACAAGTGCACGTTGCGCCTCACCTCGGAGTAACCG
CAAAACCGCATGTCATTGGAGAACGGGAGTTGAGATCTCGCAAAGTTCCA
CCAGTATATGACACTCCAAATCGGAGGAAGAGCATCGGCAGAAAAGATAT
CCAAAAAGTGAACAAGTTCATCACGGATCTGTTTTACTTATCGAGATCGG
TTAACGAAGAACAACTTGCACTGGCTTACTGGTGGGAAAACAAATTCCTG
TCGTTGGGCTTCTTCATTCTTTTCTATGGAACTCGACTGAATTTGACAAA
TGTCACGCTTTCCAGGTTGTTCCTTGGAGAGATGATGGCTCAACACGATG
CAGTTCTCCTCGCTTGGAAAGAGAAAAGACGCTATGACTACGTTCGACCG
CAGACTTTGATTCGAAGAGTTCTAAAGGGCAGAAAAGTGAGGGCTTTCCG
AGGGTTTGGAAAAGGGGTTGGCTTGGTTTCAGCTGAGGAGTGGGAGCCGG
TTTTGCGAACTCAGTCTCACTCGGAATACCCGTCTGGATCGGCAGCAATT
TGTACTGCATCGCTGGAACACCTTCAGGTGGCGTTGAGCTCTGCTGACAT
TAATGCGAACGTATCTATTCCCAAATTCGAGCTGAATCTACCACAGGGAG
TGTTGCTAAGCCCGATCACGAGTAATATAACTATATCATTCGAGAGTCTC
AAAGCTGCGAGCGATAGCTGCGGATTCTCAAGGCTTACTTCAGGGGTGCA
CTTCGCGCCTTCTGTTCCAGCTGGAAGTCGCCTAACGACTGGAGTTGGCG
AGGCGGCTTACAAGCATGTGATAGATCTGTACGAAGGAAAGGTTCCAGAG
TTTTGCACGAGGTGCATTCGTGATTAG

protein sequence of Ggra6916.t1

>Ggra6916.t1 ID=Ggra6916.t1|Name=Ggra6916.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=509bp
MGRFFISFFVFIVFLSSARSQNELSTKQLVEALTIPLVGTNELIAVLFPN
EVLRMETPIAVRYALFFVVSIHEYVSACHPVALSFLGVRHSIPSRFCSSP
LSLAIIERQILYRLIESEFPLEAPRYAAILQRFGINALDDSTDTDTEVGW
ANVVSKGLVEYFANDGWNSLGDLSRKDYLAPFEDPSGYEPQNPANLSPRK
LLKPLRWQPLTQQSDFRGRFATQVHVAPHLGVTAKPHVIGERELRSRKVP
PVYDTPNRRKSIGRKDIQKVNKFITDLFYLSRSVNEEQLALAYWWENKFL
SLGFFILFYGTRLNLTNVTLSRLFLGEMMAQHDAVLLAWKEKRRYDYVRP
QTLIRRVLKGRKVRAFRGFGKGVGLVSAEEWEPVLRTQSHSEYPSGSAAI
CTASLEHLQVALSSADINANVSIPKFELNLPQGVLLSPITSNITISFESL
KAASDSCGFSRLTSGVHFAPSVPAGSRLTTGVGEAAYKHVIDLYEGKVPE
FCTRCIRD*

mRNA from alignment at tig00000144_pilon:198254..199780+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6916.t1 ID=Ggra6916.t1|Name=Ggra6916.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1527bp|location=Sequence derived from alignment at tig00000144_pilon:198254..199780+ (Gracilaria gracilis GNS1m male)
ATGGGCCGTTTCTTCATCTCTTTCTTCGTGTTCATTGTATTCCTCTCCTC
GGCCAGATCGCAGAATGAATTATCAACAAAGCAGCTGGTTGAGGCGCTCA
CCATTCCCTTGGTAGGAACCAATGAGCTTATCGCAGTTCTATTCCCTAAT
GAAGTGTTACGCATGGAAACACCGATCGCCGTCCGATATGCACTGTTCTT
CGTGGTCTCTATTCATGAATATGTATCCGCTTGCCATCCCGTCGCATTAT
CGTTCCTGGGTGTGCGTCACTCCATACCTTCTCGCTTCTGTTCGTCACCG
CTCTCTCTAGCAATCATCGAACGCCAAATACTTTATCGTCTGATCGAGTC
AGAGTTCCCGTTGGAGGCGCCGCGATATGCAGCCATTTTGCAACGTTTCG
GGATAAACGCATTGGACGATTCCACCGACACTGACACTGAAGTGGGTTGG
GCAAACGTCGTCTCCAAGGGGCTGGTGGAATACTTTGCCAATGATGGTTG
GAACTCTCTTGGAGATCTATCAAGGAAGGACTACCTTGCACCATTTGAAG
ATCCTAGTGGCTACGAACCACAAAACCCAGCAAATTTGTCTCCTAGGAAG
CTTCTGAAACCATTGCGATGGCAGCCACTGACTCAACAGTCTGACTTCCG
TGGCAGGTTTGCCACACAAGTGCACGTTGCGCCTCACCTCGGAGTAACCG
CAAAACCGCATGTCATTGGAGAACGGGAGTTGAGATCTCGCAAAGTTCCA
CCAGTATATGACACTCCAAATCGGAGGAAGAGCATCGGCAGAAAAGATAT
CCAAAAAGTGAACAAGTTCATCACGGATCTGTTTTACTTATCGAGATCGG
TTAACGAAGAACAACTTGCACTGGCTTACTGGTGGGAAAACAAATTCCTG
TCGTTGGGCTTCTTCATTCTTTTCTATGGAACTCGACTGAATTTGACAAA
TGTCACGCTTTCCAGGTTGTTCCTTGGAGAGATGATGGCTCAACACGATG
CAGTTCTCCTCGCTTGGAAAGAGAAAAGACGCTATGACTACGTTCGACCG
CAGACTTTGATTCGAAGAGTTCTAAAGGGCAGAAAAGTGAGGGCTTTCCG
AGGGTTTGGAAAAGGGGTTGGCTTGGTTTCAGCTGAGGAGTGGGAGCCGG
TTTTGCGAACTCAGTCTCACTCGGAATACCCGTCTGGATCGGCAGCAATT
TGTACTGCATCGCTGGAACACCTTCAGGTGGCGTTGAGCTCTGCTGACAT
TAATGCGAACGTATCTATTCCCAAATTCGAGCTGAATCTACCACAGGGAG
TGTTGCTAAGCCCGATCACGAGTAATATAACTATATCATTCGAGAGTCTC
AAAGCTGCGAGCGATAGCTGCGGATTCTCAAGGCTTACTTCAGGGGTGCA
CTTCGCGCCTTCTGTTCCAGCTGGAAGTCGCCTAACGACTGGAGTTGGCG
AGGCGGCTTACAAGCATGTGATAGATCTGTACGAAGGAAAGGTTCCAGAG
TTTTGCACGAGGTGCATTCGTGATTAG

Coding sequence (CDS) from alignment at tig00000144_pilon:198254..199780+

>Ggra6916.t1 ID=Ggra6916.t1|Name=Ggra6916.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1527bp|location=Sequence derived from alignment at tig00000144_pilon:198254..199780+ (Gracilaria gracilis GNS1m male)
ATGGGCCGTTTCTTCATCTCTTTCTTCGTGTTCATTGTATTCCTCTCCTC
GGCCAGATCGCAGAATGAATTATCAACAAAGCAGCTGGTTGAGGCGCTCA
CCATTCCCTTGGTAGGAACCAATGAGCTTATCGCAGTTCTATTCCCTAAT
GAAGTGTTACGCATGGAAACACCGATCGCCGTCCGATATGCACTGTTCTT
CGTGGTCTCTATTCATGAATATGTATCCGCTTGCCATCCCGTCGCATTAT
CGTTCCTGGGTGTGCGTCACTCCATACCTTCTCGCTTCTGTTCGTCACCG
CTCTCTCTAGCAATCATCGAACGCCAAATACTTTATCGTCTGATCGAGTC
AGAGTTCCCGTTGGAGGCGCCGCGATATGCAGCCATTTTGCAACGTTTCG
GGATAAACGCATTGGACGATTCCACCGACACTGACACTGAAGTGGGTTGG
GCAAACGTCGTCTCCAAGGGGCTGGTGGAATACTTTGCCAATGATGGTTG
GAACTCTCTTGGAGATCTATCAAGGAAGGACTACCTTGCACCATTTGAAG
ATCCTAGTGGCTACGAACCACAAAACCCAGCAAATTTGTCTCCTAGGAAG
CTTCTGAAACCATTGCGATGGCAGCCACTGACTCAACAGTCTGACTTCCG
TGGCAGGTTTGCCACACAAGTGCACGTTGCGCCTCACCTCGGAGTAACCG
CAAAACCGCATGTCATTGGAGAACGGGAGTTGAGATCTCGCAAAGTTCCA
CCAGTATATGACACTCCAAATCGGAGGAAGAGCATCGGCAGAAAAGATAT
CCAAAAAGTGAACAAGTTCATCACGGATCTGTTTTACTTATCGAGATCGG
TTAACGAAGAACAACTTGCACTGGCTTACTGGTGGGAAAACAAATTCCTG
TCGTTGGGCTTCTTCATTCTTTTCTATGGAACTCGACTGAATTTGACAAA
TGTCACGCTTTCCAGGTTGTTCCTTGGAGAGATGATGGCTCAACACGATG
CAGTTCTCCTCGCTTGGAAAGAGAAAAGACGCTATGACTACGTTCGACCG
CAGACTTTGATTCGAAGAGTTCTAAAGGGCAGAAAAGTGAGGGCTTTCCG
AGGGTTTGGAAAAGGGGTTGGCTTGGTTTCAGCTGAGGAGTGGGAGCCGG
TTTTGCGAACTCAGTCTCACTCGGAATACCCGTCTGGATCGGCAGCAATT
TGTACTGCATCGCTGGAACACCTTCAGGTGGCGTTGAGCTCTGCTGACAT
TAATGCGAACGTATCTATTCCCAAATTCGAGCTGAATCTACCACAGGGAG
TGTTGCTAAGCCCGATCACGAGTAATATAACTATATCATTCGAGAGTCTC
AAAGCTGCGAGCGATAGCTGCGGATTCTCAAGGCTTACTTCAGGGGTGCA
CTTCGCGCCTTCTGTTCCAGCTGGAAGTCGCCTAACGACTGGAGTTGGCG
AGGCGGCTTACAAGCATGTGATAGATCTGTACGAAGGAAAGGTTCCAGAG
TTTTGCACGAGGTGCATTCGTGATTAG