Ggra6915.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6915.t1
Unique NameGgra6915.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length223
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000144_piloncontigtig00000144_pilon:187107..187775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6915Ggra6915Gracilaria gracilis GNS1m malegenetig00000144_pilon 187107..187775 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6915.t1.start1Ggra6915.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000144_pilon 187107..187109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6915.t1.CDS1Ggra6915.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000144_pilon 187107..187775 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6915.t1.exon1Ggra6915.t1.exon1Gracilaria gracilis GNS1m maleexontig00000144_pilon 187107..187775 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6915.t1.stop1Ggra6915.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000144_pilon 187773..187775 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6915.t1Ggra6915.t1Gracilaria gracilis GNS1m malepolypeptidetig00000144_pilon 187107..187775 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6915.t1 ID=Ggra6915.t1|Name=Ggra6915.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=223bp
MALPERQEWRLPPAYENHSFFVEQRRRRTPDQFAGNCPLQPPATPPTSPP
ISRKRRRSQSQSHSASDGASSDKERSTSADSEQEEAVDKGQAEGSSSCST
EHLTEDEKRQLLKIRIKLPLKMCYVVQADVPKRADKDEEQHAPAVKKHKV
ESQSHPPVMLNLRIRDGYQTDEDGFLVEPRRSIVLVQHRVKRERRRRESL
MFRWRRRRPAINGLTAGSGCIR*
back to top

spliced messenger RNA

>Ggra6915.t1 ID=Ggra6915.t1|Name=Ggra6915.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=669bp|location=Sequence derived from alignment at tig00000144_pilon:187107..187775+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTACCGGAGAGACAAGAGTGGAGACTCCCGCCGGCATACGAAAA
CCATTCATTCTTCGTGGAACAACGTCGACGGCGCACACCAGATCAGTTCG
CCGGAAATTGTCCACTGCAACCGCCTGCCACACCGCCTACATCCCCGCCG
ATTAGTAGGAAGAGGAGAAGAAGTCAGTCGCAGTCGCACTCTGCTTCAGA
CGGTGCTTCCAGCGACAAAGAACGCTCAACCAGTGCCGACAGCGAGCAAG
AAGAGGCTGTGGACAAGGGCCAAGCCGAAGGCTCTTCATCATGCTCCACC
GAGCACCTTACGGAAGATGAAAAGCGACAGTTGCTGAAGATACGCATCAA
ACTGCCGCTGAAAATGTGCTACGTGGTGCAGGCCGACGTGCCAAAACGAG
CAGACAAGGATGAAGAACAACACGCGCCGGCAGTGAAGAAGCACAAGGTT
GAGAGCCAGAGCCATCCGCCCGTGATGCTCAACCTCAGGATTCGCGACGG
GTACCAAACGGATGAAGATGGCTTTCTGGTCGAACCTCGCCGCTCCATCG
TGCTTGTACAACACCGCGTGAAGCGAGAACGAAGGCGTCGCGAAAGCTTG
ATGTTTCGCTGGAGACGGAGAAGACCGGCGATCAACGGTTTGACTGCAGG
AAGCGGCTGTATACGATGA
back to top

protein sequence of Ggra6915.t1

>Ggra6915.t1 ID=Ggra6915.t1|Name=Ggra6915.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=223bp
MALPERQEWRLPPAYENHSFFVEQRRRRTPDQFAGNCPLQPPATPPTSPP
ISRKRRRSQSQSHSASDGASSDKERSTSADSEQEEAVDKGQAEGSSSCST
EHLTEDEKRQLLKIRIKLPLKMCYVVQADVPKRADKDEEQHAPAVKKHKV
ESQSHPPVMLNLRIRDGYQTDEDGFLVEPRRSIVLVQHRVKRERRRRESL
MFRWRRRRPAINGLTAGSGCIR*
back to top

mRNA from alignment at tig00000144_pilon:187107..187775+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6915.t1 ID=Ggra6915.t1|Name=Ggra6915.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=669bp|location=Sequence derived from alignment at tig00000144_pilon:187107..187775+ (Gracilaria gracilis GNS1m male)
ATGGCTTTACCGGAGAGACAAGAGTGGAGACTCCCGCCGGCATACGAAAA
CCATTCATTCTTCGTGGAACAACGTCGACGGCGCACACCAGATCAGTTCG
CCGGAAATTGTCCACTGCAACCGCCTGCCACACCGCCTACATCCCCGCCG
ATTAGTAGGAAGAGGAGAAGAAGTCAGTCGCAGTCGCACTCTGCTTCAGA
CGGTGCTTCCAGCGACAAAGAACGCTCAACCAGTGCCGACAGCGAGCAAG
AAGAGGCTGTGGACAAGGGCCAAGCCGAAGGCTCTTCATCATGCTCCACC
GAGCACCTTACGGAAGATGAAAAGCGACAGTTGCTGAAGATACGCATCAA
ACTGCCGCTGAAAATGTGCTACGTGGTGCAGGCCGACGTGCCAAAACGAG
CAGACAAGGATGAAGAACAACACGCGCCGGCAGTGAAGAAGCACAAGGTT
GAGAGCCAGAGCCATCCGCCCGTGATGCTCAACCTCAGGATTCGCGACGG
GTACCAAACGGATGAAGATGGCTTTCTGGTCGAACCTCGCCGCTCCATCG
TGCTTGTACAACACCGCGTGAAGCGAGAACGAAGGCGTCGCGAAAGCTTG
ATGTTTCGCTGGAGACGGAGAAGACCGGCGATCAACGGTTTGACTGCAGG
AAGCGGCTGTATACGATGA
back to top

Coding sequence (CDS) from alignment at tig00000144_pilon:187107..187775+

>Ggra6915.t1 ID=Ggra6915.t1|Name=Ggra6915.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=669bp|location=Sequence derived from alignment at tig00000144_pilon:187107..187775+ (Gracilaria gracilis GNS1m male)
ATGGCTTTACCGGAGAGACAAGAGTGGAGACTCCCGCCGGCATACGAAAA
CCATTCATTCTTCGTGGAACAACGTCGACGGCGCACACCAGATCAGTTCG
CCGGAAATTGTCCACTGCAACCGCCTGCCACACCGCCTACATCCCCGCCG
ATTAGTAGGAAGAGGAGAAGAAGTCAGTCGCAGTCGCACTCTGCTTCAGA
CGGTGCTTCCAGCGACAAAGAACGCTCAACCAGTGCCGACAGCGAGCAAG
AAGAGGCTGTGGACAAGGGCCAAGCCGAAGGCTCTTCATCATGCTCCACC
GAGCACCTTACGGAAGATGAAAAGCGACAGTTGCTGAAGATACGCATCAA
ACTGCCGCTGAAAATGTGCTACGTGGTGCAGGCCGACGTGCCAAAACGAG
CAGACAAGGATGAAGAACAACACGCGCCGGCAGTGAAGAAGCACAAGGTT
GAGAGCCAGAGCCATCCGCCCGTGATGCTCAACCTCAGGATTCGCGACGG
GTACCAAACGGATGAAGATGGCTTTCTGGTCGAACCTCGCCGCTCCATCG
TGCTTGTACAACACCGCGTGAAGCGAGAACGAAGGCGTCGCGAAAGCTTG
ATGTTTCGCTGGAGACGGAGAAGACCGGCGATCAACGGTTTGACTGCAGG
AAGCGGCTGTATACGATGA
back to top