Ggra6914.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6914.t1
Unique Name	Ggra6914.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	331

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000144_pilon	contig	tig00000144_pilon:77944..78936 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	8010.XP_010867604.1
PFAMs	Aerolysin,ETX_MTX2,Jacalin
Max annot lvl	33208\|Metazoa
GOs	GO:0003674,GO:0005488,GO:0005515,GO:0005537,GO:0005575,GO:0008150,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0022607,GO:0030246,GO:0031224,GO:0032991,GO:0036094,GO:0042802,GO:0042803,GO:0043933,GO:0044085,GO:0044425,GO:0046930,GO:0046983,GO:0048029,GO:0048030,GO:0051259,GO:0051260,GO:0065003,GO:0070492,GO:0071840,GO:0098796
Evalue	1.09e-32
EggNOG OGs	2CN27@1\|root,2QTF7@2759\|Eukaryota,39ZD9@33154\|Opisthokonta,3BVEV@33208\|Metazoa,3D5XB@33213\|Bilateria,489EN@7711\|Chordata,49420@7742\|Vertebrata,4A2K0@7898\|Actinopterygii
Description	Natterin-like protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6914	Ggra6914	Gracilaria gracilis GNS1m male	gene	tig00000144_pilon 77944..78936 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6914.t1.stop1	Ggra6914.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000144_pilon 77944..77946 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6914.t1.CDS1	Ggra6914.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000144_pilon 77944..78936 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6914.t1.exon1	Ggra6914.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000144_pilon 77944..78936 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6914.t1.start1	Ggra6914.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000144_pilon 78934..78936 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6914.t1	Ggra6914.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000144_pilon 77944..78936 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000144_pilon:77944..78936-
coding sequence from alignment at tig00000144_pilon:77944..78936-

mRNA sequence

>Ggra6914.t1 ID=Ggra6914.t1|Name=Ggra6914.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=331bp
MVLIQCPVSLDYFTSNLASGGKGGQNFSNIKDENGAVLRKIEAWKQGWRI
RCVRVTFSDGSVFTAGQPSGSYGGSLKIASDEFISRLNVQPTGVKSSGGY
YRLGAIWIKTSKGRSWGIFSDNLSGGTHHWVEVGSGICCGVFGRHGADVD
SFGFAMLRPVLDADIVDVKYPNLDLQAVSSDPAYVTKDSLDNRNGEDVVS
KVMEIEEMVTTVNEWSSTFNTEFGVDVTVSAGIPMVADVETSASWSVGYS
SSHMMSEEKTSRVNQKWTITASPGNMTAAEGRMYSDEITNKFQGTMRVTL
NNGKLYEYDITGEYEGVNYLRSDYVTKTIN*

spliced messenger RNA

>Ggra6914.t1 ID=Ggra6914.t1|Name=Ggra6914.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=993bp|location=Sequence derived from alignment at tig00000144_pilon:77944..78936- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCTCATCCAATGCCCGGTCAGTCTTGACTACTTCACGTCCAATTT
GGCATCTGGAGGAAAGGGAGGACAGAATTTCAGCAATATCAAAGACGAAA
ATGGTGCAGTTTTACGCAAAATAGAAGCCTGGAAACAGGGTTGGCGTATC
CGATGCGTTCGTGTCACCTTCTCTGATGGGTCCGTTTTCACAGCTGGCCA
ACCATCTGGTAGCTATGGTGGATCCCTCAAAATTGCCTCGGATGAGTTTA
TCAGCAGACTTAATGTTCAGCCCACTGGCGTAAAGTCAAGCGGCGGCTAC
TACAGACTGGGAGCCATCTGGATCAAAACAAGCAAAGGACGGAGTTGGGG
AATTTTTTCAGACAATCTGAGTGGTGGAACGCATCATTGGGTTGAAGTAG
GATCCGGTATTTGTTGCGGAGTGTTTGGGAGACATGGAGCGGACGTTGAC
AGTTTTGGATTCGCAATGCTTCGCCCAGTTTTGGATGCCGATATAGTGGA
CGTCAAATATCCCAACCTCGATCTACAAGCTGTTTCATCAGATCCAGCAT
ATGTTACCAAGGATTCCTTGGACAACAGAAACGGGGAAGATGTAGTTTCC
AAAGTGATGGAGATCGAAGAAATGGTAACGACCGTGAACGAATGGTCAAG
CACTTTTAATACAGAGTTTGGGGTAGACGTAACAGTTTCAGCTGGAATTC
CGATGGTAGCAGATGTGGAGACTTCAGCAAGTTGGTCTGTTGGATATTCA
AGCAGCCACATGATGTCAGAAGAAAAAACGTCTAGGGTTAACCAGAAGTG
GACTATAACTGCATCTCCTGGCAATATGACTGCTGCTGAAGGACGGATGT
ACTCAGATGAGATTACCAATAAGTTCCAGGGCACCATGCGAGTAACGCTG
AACAATGGGAAACTATATGAGTATGATATCACGGGCGAGTATGAAGGCGT
GAACTACCTTCGTTCAGACTACGTCACCAAGACAATCAACTGA

protein sequence of Ggra6914.t1

>Ggra6914.t1 ID=Ggra6914.t1|Name=Ggra6914.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=331bp
MVLIQCPVSLDYFTSNLASGGKGGQNFSNIKDENGAVLRKIEAWKQGWRI
RCVRVTFSDGSVFTAGQPSGSYGGSLKIASDEFISRLNVQPTGVKSSGGY
YRLGAIWIKTSKGRSWGIFSDNLSGGTHHWVEVGSGICCGVFGRHGADVD
SFGFAMLRPVLDADIVDVKYPNLDLQAVSSDPAYVTKDSLDNRNGEDVVS
KVMEIEEMVTTVNEWSSTFNTEFGVDVTVSAGIPMVADVETSASWSVGYS
SSHMMSEEKTSRVNQKWTITASPGNMTAAEGRMYSDEITNKFQGTMRVTL
NNGKLYEYDITGEYEGVNYLRSDYVTKTIN*

mRNA from alignment at tig00000144_pilon:77944..78936-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6914.t1 ID=Ggra6914.t1|Name=Ggra6914.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=993bp|location=Sequence derived from alignment at tig00000144_pilon:77944..78936- (Gracilaria gracilis GNS1m male)
ATGGTTCTCATCCAATGCCCGGTCAGTCTTGACTACTTCACGTCCAATTT
GGCATCTGGAGGAAAGGGAGGACAGAATTTCAGCAATATCAAAGACGAAA
ATGGTGCAGTTTTACGCAAAATAGAAGCCTGGAAACAGGGTTGGCGTATC
CGATGCGTTCGTGTCACCTTCTCTGATGGGTCCGTTTTCACAGCTGGCCA
ACCATCTGGTAGCTATGGTGGATCCCTCAAAATTGCCTCGGATGAGTTTA
TCAGCAGACTTAATGTTCAGCCCACTGGCGTAAAGTCAAGCGGCGGCTAC
TACAGACTGGGAGCCATCTGGATCAAAACAAGCAAAGGACGGAGTTGGGG
AATTTTTTCAGACAATCTGAGTGGTGGAACGCATCATTGGGTTGAAGTAG
GATCCGGTATTTGTTGCGGAGTGTTTGGGAGACATGGAGCGGACGTTGAC
AGTTTTGGATTCGCAATGCTTCGCCCAGTTTTGGATGCCGATATAGTGGA
CGTCAAATATCCCAACCTCGATCTACAAGCTGTTTCATCAGATCCAGCAT
ATGTTACCAAGGATTCCTTGGACAACAGAAACGGGGAAGATGTAGTTTCC
AAAGTGATGGAGATCGAAGAAATGGTAACGACCGTGAACGAATGGTCAAG
CACTTTTAATACAGAGTTTGGGGTAGACGTAACAGTTTCAGCTGGAATTC
CGATGGTAGCAGATGTGGAGACTTCAGCAAGTTGGTCTGTTGGATATTCA
AGCAGCCACATGATGTCAGAAGAAAAAACGTCTAGGGTTAACCAGAAGTG
GACTATAACTGCATCTCCTGGCAATATGACTGCTGCTGAAGGACGGATGT
ACTCAGATGAGATTACCAATAAGTTCCAGGGCACCATGCGAGTAACGCTG
AACAATGGGAAACTATATGAGTATGATATCACGGGCGAGTATGAAGGCGT
GAACTACCTTCGTTCAGACTACGTCACCAAGACAATCAACTGA

Coding sequence (CDS) from alignment at tig00000144_pilon:77944..78936-

>Ggra6914.t1 ID=Ggra6914.t1|Name=Ggra6914.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=993bp|location=Sequence derived from alignment at tig00000144_pilon:77944..78936- (Gracilaria gracilis GNS1m male)
ATGGTTCTCATCCAATGCCCGGTCAGTCTTGACTACTTCACGTCCAATTT
GGCATCTGGAGGAAAGGGAGGACAGAATTTCAGCAATATCAAAGACGAAA
ATGGTGCAGTTTTACGCAAAATAGAAGCCTGGAAACAGGGTTGGCGTATC
CGATGCGTTCGTGTCACCTTCTCTGATGGGTCCGTTTTCACAGCTGGCCA
ACCATCTGGTAGCTATGGTGGATCCCTCAAAATTGCCTCGGATGAGTTTA
TCAGCAGACTTAATGTTCAGCCCACTGGCGTAAAGTCAAGCGGCGGCTAC
TACAGACTGGGAGCCATCTGGATCAAAACAAGCAAAGGACGGAGTTGGGG
AATTTTTTCAGACAATCTGAGTGGTGGAACGCATCATTGGGTTGAAGTAG
GATCCGGTATTTGTTGCGGAGTGTTTGGGAGACATGGAGCGGACGTTGAC
AGTTTTGGATTCGCAATGCTTCGCCCAGTTTTGGATGCCGATATAGTGGA
CGTCAAATATCCCAACCTCGATCTACAAGCTGTTTCATCAGATCCAGCAT
ATGTTACCAAGGATTCCTTGGACAACAGAAACGGGGAAGATGTAGTTTCC
AAAGTGATGGAGATCGAAGAAATGGTAACGACCGTGAACGAATGGTCAAG
CACTTTTAATACAGAGTTTGGGGTAGACGTAACAGTTTCAGCTGGAATTC
CGATGGTAGCAGATGTGGAGACTTCAGCAAGTTGGTCTGTTGGATATTCA
AGCAGCCACATGATGTCAGAAGAAAAAACGTCTAGGGTTAACCAGAAGTG
GACTATAACTGCATCTCCTGGCAATATGACTGCTGCTGAAGGACGGATGT
ACTCAGATGAGATTACCAATAAGTTCCAGGGCACCATGCGAGTAACGCTG
AACAATGGGAAACTATATGAGTATGATATCACGGGCGAGTATGAAGGCGT
GAACTACCTTCGTTCAGACTACGTCACCAAGACAATCAACTGA