Ggra6913.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6913.t1
Unique Name	Ggra6913.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	574

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000144_pilon	contig	tig00000144_pilon:2141..3862 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6913	Ggra6913	Gracilaria gracilis GNS1m male	gene	tig00000144_pilon 2141..3862 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6913.t1.start1	Ggra6913.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000144_pilon 2141..2143 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6913.t1.CDS1	Ggra6913.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000144_pilon 2141..3862 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6913.t1.exon1	Ggra6913.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000144_pilon 2141..3862 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6913.t1.stop1	Ggra6913.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000144_pilon 3860..3862 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6913.t1	Ggra6913.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000144_pilon 2141..3862 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000144_pilon:2141..3862+
coding sequence from alignment at tig00000144_pilon:2141..3862+

mRNA sequence

>Ggra6913.t1 ID=Ggra6913.t1|Name=Ggra6913.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=574bp
MIDLGELLLFNKNFASERKRGVQMLERAIKQTEHPLAMTHLAYHLIRNGN
SVDHRRAVWLLERSLKLREDSFSLNELAQCYENGIGVGTNINVAVQLYER
AIRLDKDPVLIFNLAFAMLRTPSYLAQRKHAISLFKKAIRQTSEAEMMNK
LGLLYGTGKGNLNQCPKKAMKWYRRAIQTSNYVPSMSNLADLLLKNEPSD
QDIEQAVRLLEDAMEEEQERDVNITLQLADTYLLHAVNLERAVRLYESAA
IRFNSMRAKSELIGIWVDRLGFGLDHRRIFEFCRDDYDENREFGSRLIMG
DMLWTGTNHMQMNRREAMQILDSLLWTGHGSFSLMLRHDLEYHPDGEKRA
RRLMKKFNNEIDKSYLSEEEVIVVSENECEEDKWLAMESFRAQMANSVTG
VWFGPYLRIGRFKLPFDGRLECVTNPMRRFTRWRNIASLNLANIVLEIEG
KQQESVIVLENLMNSELRLIAMLNLAYILMSDIEGVPKNWARGVQLIEDA
VKERNDVSARAMLANALAERSDSDDGDVERGWELWHGVESELEADEKELQ
HVSRLITASSKKKWDILNRQKQE*

spliced messenger RNA

>Ggra6913.t1 ID=Ggra6913.t1|Name=Ggra6913.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1722bp|location=Sequence derived from alignment at tig00000144_pilon:2141..3862+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGATTTAGGTGAACTGTTACTCTTCAACAAGAACTTCGCATCGGA
GCGCAAGCGAGGCGTTCAAATGCTCGAACGCGCCATCAAACAAACAGAAC
ATCCGCTGGCTATGACTCACCTGGCGTACCACCTAATAAGAAATGGAAAC
TCAGTAGATCACCGTCGTGCCGTGTGGTTGCTCGAACGCTCGTTGAAATT
GCGAGAGGACTCTTTTTCTCTCAACGAATTAGCACAATGCTATGAGAATG
GAATTGGTGTTGGAACGAATATTAATGTTGCTGTGCAGCTGTATGAACGA
GCTATTCGGCTAGACAAAGATCCCGTTCTCATCTTCAATCTAGCCTTCGC
CATGCTCAGGACACCAAGTTACCTTGCTCAAAGAAAACATGCTATATCGC
TTTTCAAGAAGGCAATCCGTCAGACTTCAGAGGCCGAAATGATGAACAAG
TTGGGACTTTTGTATGGTACAGGAAAGGGCAATCTCAATCAATGCCCTAA
GAAGGCAATGAAATGGTATCGTCGTGCAATTCAAACATCAAACTACGTGC
CTTCCATGTCTAATCTTGCTGATCTTCTTTTAAAGAATGAACCCAGCGAC
CAGGATATCGAACAGGCGGTTCGTTTGCTAGAAGATGCGATGGAAGAGGA
ACAAGAGCGAGATGTGAACATCACCTTGCAGCTGGCAGACACTTACCTGC
TGCACGCAGTTAACCTGGAGCGAGCTGTTCGATTATATGAATCCGCAGCA
ATCCGTTTCAATTCAATGAGAGCCAAGTCAGAGCTGATTGGAATATGGGT
TGATCGTCTAGGTTTTGGCCTTGATCATCGCCGGATATTTGAGTTTTGTC
GTGATGACTACGACGAAAACAGAGAATTCGGTTCTCGTTTGATTATGGGA
GATATGTTATGGACCGGTACTAACCACATGCAAATGAATCGTAGAGAAGC
TATGCAGATCTTGGATTCCCTTCTTTGGACTGGACATGGCTCTTTCTCGT
TAATGTTGAGACATGATCTTGAATACCATCCAGATGGGGAGAAGCGAGCT
CGAAGGCTTATGAAAAAGTTCAACAACGAAATTGATAAATCTTATCTTTC
CGAAGAAGAGGTAATCGTTGTCAGCGAGAACGAATGTGAGGAAGATAAAT
GGCTAGCTATGGAGAGCTTTCGAGCTCAAATGGCTAATTCCGTAACGGGT
GTTTGGTTTGGGCCATACCTTCGAATTGGACGCTTCAAACTACCGTTTGA
TGGTCGATTAGAATGTGTAACAAATCCGATGAGGAGGTTTACGAGATGGA
GAAACATTGCTTCTTTGAATCTGGCTAACATTGTACTTGAGATTGAAGGA
AAGCAACAAGAATCTGTGATAGTGCTTGAAAATCTAATGAATTCCGAGTT
GAGGTTGATTGCAATGCTGAACCTCGCATACATTCTAATGAGCGATATTG
AAGGAGTGCCAAAAAATTGGGCAAGAGGAGTGCAACTTATTGAAGACGCC
GTGAAGGAGAGGAACGATGTTTCTGCTCGCGCAATGTTGGCCAACGCGTT
GGCGGAGCGATCAGACTCAGATGATGGCGATGTGGAGCGAGGATGGGAAC
TATGGCACGGCGTGGAGTCGGAGTTGGAGGCGGACGAAAAGGAGCTCCAA
CACGTTTCGCGGCTAATAACGGCCAGCAGCAAGAAGAAATGGGATATTCT
CAACCGCCAAAAACAAGAGTGA

protein sequence of Ggra6913.t1

>Ggra6913.t1 ID=Ggra6913.t1|Name=Ggra6913.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=574bp
MIDLGELLLFNKNFASERKRGVQMLERAIKQTEHPLAMTHLAYHLIRNGN
SVDHRRAVWLLERSLKLREDSFSLNELAQCYENGIGVGTNINVAVQLYER
AIRLDKDPVLIFNLAFAMLRTPSYLAQRKHAISLFKKAIRQTSEAEMMNK
LGLLYGTGKGNLNQCPKKAMKWYRRAIQTSNYVPSMSNLADLLLKNEPSD
QDIEQAVRLLEDAMEEEQERDVNITLQLADTYLLHAVNLERAVRLYESAA
IRFNSMRAKSELIGIWVDRLGFGLDHRRIFEFCRDDYDENREFGSRLIMG
DMLWTGTNHMQMNRREAMQILDSLLWTGHGSFSLMLRHDLEYHPDGEKRA
RRLMKKFNNEIDKSYLSEEEVIVVSENECEEDKWLAMESFRAQMANSVTG
VWFGPYLRIGRFKLPFDGRLECVTNPMRRFTRWRNIASLNLANIVLEIEG
KQQESVIVLENLMNSELRLIAMLNLAYILMSDIEGVPKNWARGVQLIEDA
VKERNDVSARAMLANALAERSDSDDGDVERGWELWHGVESELEADEKELQ
HVSRLITASSKKKWDILNRQKQE*

mRNA from alignment at tig00000144_pilon:2141..3862+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6913.t1 ID=Ggra6913.t1|Name=Ggra6913.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1722bp|location=Sequence derived from alignment at tig00000144_pilon:2141..3862+ (Gracilaria gracilis GNS1m male)
ATGATTGATTTAGGTGAACTGTTACTCTTCAACAAGAACTTCGCATCGGA
GCGCAAGCGAGGCGTTCAAATGCTCGAACGCGCCATCAAACAAACAGAAC
ATCCGCTGGCTATGACTCACCTGGCGTACCACCTAATAAGAAATGGAAAC
TCAGTAGATCACCGTCGTGCCGTGTGGTTGCTCGAACGCTCGTTGAAATT
GCGAGAGGACTCTTTTTCTCTCAACGAATTAGCACAATGCTATGAGAATG
GAATTGGTGTTGGAACGAATATTAATGTTGCTGTGCAGCTGTATGAACGA
GCTATTCGGCTAGACAAAGATCCCGTTCTCATCTTCAATCTAGCCTTCGC
CATGCTCAGGACACCAAGTTACCTTGCTCAAAGAAAACATGCTATATCGC
TTTTCAAGAAGGCAATCCGTCAGACTTCAGAGGCCGAAATGATGAACAAG
TTGGGACTTTTGTATGGTACAGGAAAGGGCAATCTCAATCAATGCCCTAA
GAAGGCAATGAAATGGTATCGTCGTGCAATTCAAACATCAAACTACGTGC
CTTCCATGTCTAATCTTGCTGATCTTCTTTTAAAGAATGAACCCAGCGAC
CAGGATATCGAACAGGCGGTTCGTTTGCTAGAAGATGCGATGGAAGAGGA
ACAAGAGCGAGATGTGAACATCACCTTGCAGCTGGCAGACACTTACCTGC
TGCACGCAGTTAACCTGGAGCGAGCTGTTCGATTATATGAATCCGCAGCA
ATCCGTTTCAATTCAATGAGAGCCAAGTCAGAGCTGATTGGAATATGGGT
TGATCGTCTAGGTTTTGGCCTTGATCATCGCCGGATATTTGAGTTTTGTC
GTGATGACTACGACGAAAACAGAGAATTCGGTTCTCGTTTGATTATGGGA
GATATGTTATGGACCGGTACTAACCACATGCAAATGAATCGTAGAGAAGC
TATGCAGATCTTGGATTCCCTTCTTTGGACTGGACATGGCTCTTTCTCGT
TAATGTTGAGACATGATCTTGAATACCATCCAGATGGGGAGAAGCGAGCT
CGAAGGCTTATGAAAAAGTTCAACAACGAAATTGATAAATCTTATCTTTC
CGAAGAAGAGGTAATCGTTGTCAGCGAGAACGAATGTGAGGAAGATAAAT
GGCTAGCTATGGAGAGCTTTCGAGCTCAAATGGCTAATTCCGTAACGGGT
GTTTGGTTTGGGCCATACCTTCGAATTGGACGCTTCAAACTACCGTTTGA
TGGTCGATTAGAATGTGTAACAAATCCGATGAGGAGGTTTACGAGATGGA
GAAACATTGCTTCTTTGAATCTGGCTAACATTGTACTTGAGATTGAAGGA
AAGCAACAAGAATCTGTGATAGTGCTTGAAAATCTAATGAATTCCGAGTT
GAGGTTGATTGCAATGCTGAACCTCGCATACATTCTAATGAGCGATATTG
AAGGAGTGCCAAAAAATTGGGCAAGAGGAGTGCAACTTATTGAAGACGCC
GTGAAGGAGAGGAACGATGTTTCTGCTCGCGCAATGTTGGCCAACGCGTT
GGCGGAGCGATCAGACTCAGATGATGGCGATGTGGAGCGAGGATGGGAAC
TATGGCACGGCGTGGAGTCGGAGTTGGAGGCGGACGAAAAGGAGCTCCAA
CACGTTTCGCGGCTAATAACGGCCAGCAGCAAGAAGAAATGGGATATTCT
CAACCGCCAAAAACAAGAGTGA

Coding sequence (CDS) from alignment at tig00000144_pilon:2141..3862+

>Ggra6913.t1 ID=Ggra6913.t1|Name=Ggra6913.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1722bp|location=Sequence derived from alignment at tig00000144_pilon:2141..3862+ (Gracilaria gracilis GNS1m male)
ATGATTGATTTAGGTGAACTGTTACTCTTCAACAAGAACTTCGCATCGGA
GCGCAAGCGAGGCGTTCAAATGCTCGAACGCGCCATCAAACAAACAGAAC
ATCCGCTGGCTATGACTCACCTGGCGTACCACCTAATAAGAAATGGAAAC
TCAGTAGATCACCGTCGTGCCGTGTGGTTGCTCGAACGCTCGTTGAAATT
GCGAGAGGACTCTTTTTCTCTCAACGAATTAGCACAATGCTATGAGAATG
GAATTGGTGTTGGAACGAATATTAATGTTGCTGTGCAGCTGTATGAACGA
GCTATTCGGCTAGACAAAGATCCCGTTCTCATCTTCAATCTAGCCTTCGC
CATGCTCAGGACACCAAGTTACCTTGCTCAAAGAAAACATGCTATATCGC
TTTTCAAGAAGGCAATCCGTCAGACTTCAGAGGCCGAAATGATGAACAAG
TTGGGACTTTTGTATGGTACAGGAAAGGGCAATCTCAATCAATGCCCTAA
GAAGGCAATGAAATGGTATCGTCGTGCAATTCAAACATCAAACTACGTGC
CTTCCATGTCTAATCTTGCTGATCTTCTTTTAAAGAATGAACCCAGCGAC
CAGGATATCGAACAGGCGGTTCGTTTGCTAGAAGATGCGATGGAAGAGGA
ACAAGAGCGAGATGTGAACATCACCTTGCAGCTGGCAGACACTTACCTGC
TGCACGCAGTTAACCTGGAGCGAGCTGTTCGATTATATGAATCCGCAGCA
ATCCGTTTCAATTCAATGAGAGCCAAGTCAGAGCTGATTGGAATATGGGT
TGATCGTCTAGGTTTTGGCCTTGATCATCGCCGGATATTTGAGTTTTGTC
GTGATGACTACGACGAAAACAGAGAATTCGGTTCTCGTTTGATTATGGGA
GATATGTTATGGACCGGTACTAACCACATGCAAATGAATCGTAGAGAAGC
TATGCAGATCTTGGATTCCCTTCTTTGGACTGGACATGGCTCTTTCTCGT
TAATGTTGAGACATGATCTTGAATACCATCCAGATGGGGAGAAGCGAGCT
CGAAGGCTTATGAAAAAGTTCAACAACGAAATTGATAAATCTTATCTTTC
CGAAGAAGAGGTAATCGTTGTCAGCGAGAACGAATGTGAGGAAGATAAAT
GGCTAGCTATGGAGAGCTTTCGAGCTCAAATGGCTAATTCCGTAACGGGT
GTTTGGTTTGGGCCATACCTTCGAATTGGACGCTTCAAACTACCGTTTGA
TGGTCGATTAGAATGTGTAACAAATCCGATGAGGAGGTTTACGAGATGGA
GAAACATTGCTTCTTTGAATCTGGCTAACATTGTACTTGAGATTGAAGGA
AAGCAACAAGAATCTGTGATAGTGCTTGAAAATCTAATGAATTCCGAGTT
GAGGTTGATTGCAATGCTGAACCTCGCATACATTCTAATGAGCGATATTG
AAGGAGTGCCAAAAAATTGGGCAAGAGGAGTGCAACTTATTGAAGACGCC
GTGAAGGAGAGGAACGATGTTTCTGCTCGCGCAATGTTGGCCAACGCGTT
GGCGGAGCGATCAGACTCAGATGATGGCGATGTGGAGCGAGGATGGGAAC
TATGGCACGGCGTGGAGTCGGAGTTGGAGGCGGACGAAAAGGAGCTCCAA
CACGTTTCGCGGCTAATAACGGCCAGCAGCAAGAAGAAATGGGATATTCT
CAACCGCCAAAAACAAGAGTGA