Ggra6897.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6897.t1
Unique NameGgra6897.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length545
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:928061..929695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706978.1
Preferred nameTCP1
PFAMsCpn60_TCP1
Max annot lvl2759|Eukaryota
KEGG koko:K09493
GOsGO:0000003,GO:0000166,GO:0000228,GO:0000242,GO:0000785,GO:0000790,GO:0000792,GO:0001669,GO:0002064,GO:0002065,GO:0002066,GO:0002199,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005720,GO:0005737,GO:0005794,GO:0005813,GO:0005815,GO:0005829,GO:0005832,GO:0005856,GO:0005874,GO:0005886,GO:0006403,GO:0006457,GO:0006458,GO:0006810,GO:0007021,GO:0007154,GO:0007165,GO:0007166,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007292,GO:0007338,GO:0007339,GO:0008037,GO:0008104,GO:0008144,GO:0008150,GO:0009566,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009988,GO:0010033,GO:0010556,GO:0010557,GO:0010604,GO:0010638,GO:0010941,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016043,GO:0017076,GO:0019219,GO:0019221,GO:0019222,GO:0019899,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0030141,GO:0030154,GO:0030554,GO:0030587,GO:0030707,GO:0030855,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031410,GO:0031625,GO:0031647,GO:0031974,GO:0031981,GO:0031982,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032501,GO:0032502,GO:0032504,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0032991,GO:0033032,GO:0033036,GO:0033043,GO:0033044,GO:0034097,GO:0034622,GO:0035036,GO:0035639,GO:0035722,GO:0036094,GO:0042000,GO:0042221,GO:0042886,GO:0042981,GO:0043067,GO:0043085,GO:0043167,GO:0043168,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044053,GO:0044085,GO:0044093,GO:0044183,GO:0044297,GO:0044389,GO:0044403,GO:0044417,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044450,GO:0044454,GO:0044464,GO:0044703,GO:0044766,GO:0045184,GO:0045935,GO:0048232,GO:0048468,GO:0048477,GO:0048515,GO:0048518,GO:0048522,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051052,GO:0051054,GO:0051082,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051338,GO:0051347,GO:0051701,GO:0051703,GO:0051704,GO:0051716,GO:0051808,GO:0051836,GO:0051972,GO:0051973,GO:0060255,GO:0060341,GO:0060429,GO:0061077,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070202,GO:0070203,GO:0070671,GO:0070887,GO:0071310,GO:0071345,GO:0071349,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0090666,GO:0090670,GO:0090685,GO:0090702,GO:0097159,GO:0097223,GO:0097367,GO:0097708,GO:0099080,GO:0099081,GO:0099120,GO:0099503,GO:0099512,GO:0099513,GO:0101031,GO:1901265,GO:1901363,GO:1901998,GO:1902579,GO:1903827,GO:1903829,GO:1904356,GO:1904358,GO:1904814,GO:1904816,GO:1904851,GO:1904872,GO:1904874,GO:1904951,GO:2000106,GO:2000109,GO:2000112,GO:2000278,GO:2000573,GO:2001252
Evalue3.94e-253
EggNOG OGsCOG0459@1|root,KOG0360@2759|Eukaryota
Descriptiontranslocation of peptides or proteins into other organism involved in symbiotic interaction
COG categoryO
BRITEko00000,ko03036,ko03110,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6897Ggra6897Gracilaria gracilis GNS1m malegenetig00000056_pilon 928061..929695 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6897.t1.stop1Ggra6897.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 928061..928063 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6897.t1.CDS1Ggra6897.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 928061..929695 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6897.t1.exon1Ggra6897.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 928061..929695 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6897.t1.start1Ggra6897.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 929693..929695 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6897.t1Ggra6897.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 928061..929695 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6897.t1 ID=Ggra6897.t1|Name=Ggra6897.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=545bp
MSSLVIKGQRESGQDVRTGNVTACVAVANIVKSSLGPVGLDKMLVDEVGD
VTVTNDGATILRLLEVEHPAAKVLTELAAQQDEEVGDGTTSVVILAAELL
RRANELVRSRIHPTNIITGYRLAMREGCKYLRDKLAKPVDKLARETLINA
AKTSLSSKILGSAESLKFATMAVDAVMAVKTPTSSGKYKYPIEAIHVLKA
QGKSAKESELLPGYALNMTRSSQLMPRRVAPAKIACLDVDLRRAKMKMGV
SVLIENPEELNKAQEKELDITRDRINAVLKAGANVVLTTKGIDDAALKYF
VEAGAIAVRRVSERDLERIAKATGATVQVAMADLGGEESFDHSLLGYADE
VYEERIRDDSILIMKNCKSTAACSVLLRGPNEYMCDEMSRSFHDAVCVVK
RTLESNSVVAGGGAVEAALSIHLENFATMIGSREQLAIAEFAEALLVIPK
TLAMNAAHDSTDLVAKLKAVHHAAQNEDSKAKLSTFGLDLDAGSLRDNLA
EGVVEPAVSKKKIIQFATEAALTIIRIDDMVKIDKKEDDGSVPY*
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spliced messenger RNA

>Ggra6897.t1 ID=Ggra6897.t1|Name=Ggra6897.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1635bp|location=Sequence derived from alignment at tig00000056_pilon:928061..929695- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTAGCCTGGTCATAAAGGGTCAGAGAGAGTCAGGCCAAGACGTTCG
TACTGGCAATGTTACGGCATGCGTGGCCGTTGCGAACATTGTCAAGAGTT
CGTTGGGTCCAGTGGGGCTTGACAAAATGTTGGTGGACGAAGTCGGAGAT
GTTACCGTCACGAACGATGGGGCGACAATCTTGAGGTTACTAGAAGTGGA
GCATCCTGCCGCAAAGGTATTGACGGAATTGGCAGCGCAACAGGATGAGG
AGGTTGGAGACGGAACGACATCTGTCGTCATTCTAGCTGCCGAACTGCTC
CGCCGAGCGAATGAACTCGTCCGGTCTCGAATTCATCCTACTAACATCAT
CACCGGCTACCGCCTTGCTATGCGCGAAGGTTGCAAGTACCTAAGAGATA
AACTCGCCAAACCTGTTGATAAACTCGCCCGCGAGACACTGATCAACGCA
GCCAAGACTAGTCTTTCTAGCAAAATATTGGGGAGTGCCGAGAGTTTGAA
GTTCGCTACCATGGCTGTAGACGCTGTTATGGCGGTAAAGACTCCGACCT
CAAGCGGCAAGTATAAGTACCCCATCGAGGCCATACATGTTCTGAAAGCA
CAGGGAAAGAGCGCAAAGGAGAGTGAACTACTCCCAGGATACGCGTTGAA
CATGACGAGATCAAGTCAACTTATGCCCAGAAGAGTTGCTCCAGCTAAAA
TCGCCTGTTTGGATGTTGATTTGCGCCGGGCGAAAATGAAGATGGGTGTA
TCTGTGTTAATCGAGAATCCGGAGGAGCTGAACAAAGCACAAGAGAAAGA
ACTTGATATTACAAGGGACCGAATTAATGCTGTATTGAAGGCCGGTGCAA
ACGTTGTTCTCACCACGAAAGGAATCGATGATGCTGCTCTCAAGTACTTT
GTGGAGGCTGGTGCAATTGCTGTTCGTCGTGTGTCTGAGCGAGATCTGGA
GCGTATCGCGAAAGCCACTGGTGCAACAGTTCAGGTAGCTATGGCAGATC
TGGGCGGTGAAGAATCATTCGACCACTCACTACTTGGGTACGCCGACGAA
GTATATGAGGAGCGAATTCGAGATGACAGCATTCTGATAATGAAGAATTG
CAAGTCAACTGCGGCTTGCTCTGTTTTACTGCGTGGCCCTAACGAGTACA
TGTGCGACGAGATGTCCCGCTCATTCCATGATGCTGTCTGTGTCGTGAAG
CGAACACTAGAGTCTAATTCCGTAGTCGCGGGTGGCGGGGCAGTAGAAGC
TGCCCTCTCGATTCATCTTGAGAACTTCGCGACAATGATCGGTTCTCGCG
AACAGCTAGCAATTGCAGAATTTGCTGAAGCTCTTCTGGTGATACCAAAG
ACTCTAGCAATGAACGCGGCTCACGATTCAACAGATCTGGTTGCAAAGCT
CAAAGCAGTTCATCATGCTGCACAAAATGAAGACTCTAAAGCCAAGCTGT
CTACTTTCGGACTAGATCTAGACGCTGGATCTCTTCGGGACAATCTTGCA
GAAGGGGTGGTAGAACCGGCTGTGAGCAAGAAGAAGATCATCCAGTTTGC
TACAGAAGCTGCCCTCACAATCATTCGCATAGATGACATGGTCAAAATTG
ATAAGAAAGAAGATGATGGATCTGTACCATACTAA
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protein sequence of Ggra6897.t1

>Ggra6897.t1 ID=Ggra6897.t1|Name=Ggra6897.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=545bp
MSSLVIKGQRESGQDVRTGNVTACVAVANIVKSSLGPVGLDKMLVDEVGD
VTVTNDGATILRLLEVEHPAAKVLTELAAQQDEEVGDGTTSVVILAAELL
RRANELVRSRIHPTNIITGYRLAMREGCKYLRDKLAKPVDKLARETLINA
AKTSLSSKILGSAESLKFATMAVDAVMAVKTPTSSGKYKYPIEAIHVLKA
QGKSAKESELLPGYALNMTRSSQLMPRRVAPAKIACLDVDLRRAKMKMGV
SVLIENPEELNKAQEKELDITRDRINAVLKAGANVVLTTKGIDDAALKYF
VEAGAIAVRRVSERDLERIAKATGATVQVAMADLGGEESFDHSLLGYADE
VYEERIRDDSILIMKNCKSTAACSVLLRGPNEYMCDEMSRSFHDAVCVVK
RTLESNSVVAGGGAVEAALSIHLENFATMIGSREQLAIAEFAEALLVIPK
TLAMNAAHDSTDLVAKLKAVHHAAQNEDSKAKLSTFGLDLDAGSLRDNLA
EGVVEPAVSKKKIIQFATEAALTIIRIDDMVKIDKKEDDGSVPY*
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mRNA from alignment at tig00000056_pilon:928061..929695-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6897.t1 ID=Ggra6897.t1|Name=Ggra6897.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1635bp|location=Sequence derived from alignment at tig00000056_pilon:928061..929695- (Gracilaria gracilis GNS1m male)
ATGTCTAGCCTGGTCATAAAGGGTCAGAGAGAGTCAGGCCAAGACGTTCG
TACTGGCAATGTTACGGCATGCGTGGCCGTTGCGAACATTGTCAAGAGTT
CGTTGGGTCCAGTGGGGCTTGACAAAATGTTGGTGGACGAAGTCGGAGAT
GTTACCGTCACGAACGATGGGGCGACAATCTTGAGGTTACTAGAAGTGGA
GCATCCTGCCGCAAAGGTATTGACGGAATTGGCAGCGCAACAGGATGAGG
AGGTTGGAGACGGAACGACATCTGTCGTCATTCTAGCTGCCGAACTGCTC
CGCCGAGCGAATGAACTCGTCCGGTCTCGAATTCATCCTACTAACATCAT
CACCGGCTACCGCCTTGCTATGCGCGAAGGTTGCAAGTACCTAAGAGATA
AACTCGCCAAACCTGTTGATAAACTCGCCCGCGAGACACTGATCAACGCA
GCCAAGACTAGTCTTTCTAGCAAAATATTGGGGAGTGCCGAGAGTTTGAA
GTTCGCTACCATGGCTGTAGACGCTGTTATGGCGGTAAAGACTCCGACCT
CAAGCGGCAAGTATAAGTACCCCATCGAGGCCATACATGTTCTGAAAGCA
CAGGGAAAGAGCGCAAAGGAGAGTGAACTACTCCCAGGATACGCGTTGAA
CATGACGAGATCAAGTCAACTTATGCCCAGAAGAGTTGCTCCAGCTAAAA
TCGCCTGTTTGGATGTTGATTTGCGCCGGGCGAAAATGAAGATGGGTGTA
TCTGTGTTAATCGAGAATCCGGAGGAGCTGAACAAAGCACAAGAGAAAGA
ACTTGATATTACAAGGGACCGAATTAATGCTGTATTGAAGGCCGGTGCAA
ACGTTGTTCTCACCACGAAAGGAATCGATGATGCTGCTCTCAAGTACTTT
GTGGAGGCTGGTGCAATTGCTGTTCGTCGTGTGTCTGAGCGAGATCTGGA
GCGTATCGCGAAAGCCACTGGTGCAACAGTTCAGGTAGCTATGGCAGATC
TGGGCGGTGAAGAATCATTCGACCACTCACTACTTGGGTACGCCGACGAA
GTATATGAGGAGCGAATTCGAGATGACAGCATTCTGATAATGAAGAATTG
CAAGTCAACTGCGGCTTGCTCTGTTTTACTGCGTGGCCCTAACGAGTACA
TGTGCGACGAGATGTCCCGCTCATTCCATGATGCTGTCTGTGTCGTGAAG
CGAACACTAGAGTCTAATTCCGTAGTCGCGGGTGGCGGGGCAGTAGAAGC
TGCCCTCTCGATTCATCTTGAGAACTTCGCGACAATGATCGGTTCTCGCG
AACAGCTAGCAATTGCAGAATTTGCTGAAGCTCTTCTGGTGATACCAAAG
ACTCTAGCAATGAACGCGGCTCACGATTCAACAGATCTGGTTGCAAAGCT
CAAAGCAGTTCATCATGCTGCACAAAATGAAGACTCTAAAGCCAAGCTGT
CTACTTTCGGACTAGATCTAGACGCTGGATCTCTTCGGGACAATCTTGCA
GAAGGGGTGGTAGAACCGGCTGTGAGCAAGAAGAAGATCATCCAGTTTGC
TACAGAAGCTGCCCTCACAATCATTCGCATAGATGACATGGTCAAAATTG
ATAAGAAAGAAGATGATGGATCTGTACCATACTAA
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Coding sequence (CDS) from alignment at tig00000056_pilon:928061..929695-

>Ggra6897.t1 ID=Ggra6897.t1|Name=Ggra6897.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1635bp|location=Sequence derived from alignment at tig00000056_pilon:928061..929695- (Gracilaria gracilis GNS1m male)
ATGTCTAGCCTGGTCATAAAGGGTCAGAGAGAGTCAGGCCAAGACGTTCG
TACTGGCAATGTTACGGCATGCGTGGCCGTTGCGAACATTGTCAAGAGTT
CGTTGGGTCCAGTGGGGCTTGACAAAATGTTGGTGGACGAAGTCGGAGAT
GTTACCGTCACGAACGATGGGGCGACAATCTTGAGGTTACTAGAAGTGGA
GCATCCTGCCGCAAAGGTATTGACGGAATTGGCAGCGCAACAGGATGAGG
AGGTTGGAGACGGAACGACATCTGTCGTCATTCTAGCTGCCGAACTGCTC
CGCCGAGCGAATGAACTCGTCCGGTCTCGAATTCATCCTACTAACATCAT
CACCGGCTACCGCCTTGCTATGCGCGAAGGTTGCAAGTACCTAAGAGATA
AACTCGCCAAACCTGTTGATAAACTCGCCCGCGAGACACTGATCAACGCA
GCCAAGACTAGTCTTTCTAGCAAAATATTGGGGAGTGCCGAGAGTTTGAA
GTTCGCTACCATGGCTGTAGACGCTGTTATGGCGGTAAAGACTCCGACCT
CAAGCGGCAAGTATAAGTACCCCATCGAGGCCATACATGTTCTGAAAGCA
CAGGGAAAGAGCGCAAAGGAGAGTGAACTACTCCCAGGATACGCGTTGAA
CATGACGAGATCAAGTCAACTTATGCCCAGAAGAGTTGCTCCAGCTAAAA
TCGCCTGTTTGGATGTTGATTTGCGCCGGGCGAAAATGAAGATGGGTGTA
TCTGTGTTAATCGAGAATCCGGAGGAGCTGAACAAAGCACAAGAGAAAGA
ACTTGATATTACAAGGGACCGAATTAATGCTGTATTGAAGGCCGGTGCAA
ACGTTGTTCTCACCACGAAAGGAATCGATGATGCTGCTCTCAAGTACTTT
GTGGAGGCTGGTGCAATTGCTGTTCGTCGTGTGTCTGAGCGAGATCTGGA
GCGTATCGCGAAAGCCACTGGTGCAACAGTTCAGGTAGCTATGGCAGATC
TGGGCGGTGAAGAATCATTCGACCACTCACTACTTGGGTACGCCGACGAA
GTATATGAGGAGCGAATTCGAGATGACAGCATTCTGATAATGAAGAATTG
CAAGTCAACTGCGGCTTGCTCTGTTTTACTGCGTGGCCCTAACGAGTACA
TGTGCGACGAGATGTCCCGCTCATTCCATGATGCTGTCTGTGTCGTGAAG
CGAACACTAGAGTCTAATTCCGTAGTCGCGGGTGGCGGGGCAGTAGAAGC
TGCCCTCTCGATTCATCTTGAGAACTTCGCGACAATGATCGGTTCTCGCG
AACAGCTAGCAATTGCAGAATTTGCTGAAGCTCTTCTGGTGATACCAAAG
ACTCTAGCAATGAACGCGGCTCACGATTCAACAGATCTGGTTGCAAAGCT
CAAAGCAGTTCATCATGCTGCACAAAATGAAGACTCTAAAGCCAAGCTGT
CTACTTTCGGACTAGATCTAGACGCTGGATCTCTTCGGGACAATCTTGCA
GAAGGGGTGGTAGAACCGGCTGTGAGCAAGAAGAAGATCATCCAGTTTGC
TACAGAAGCTGCCCTCACAATCATTCGCATAGATGACATGGTCAAAATTG
ATAAGAAAGAAGATGATGGATCTGTACCATACTAA
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