Ggra6896.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6896.t1
Unique Name	Ggra6896.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	502

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:925124..926629 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	159749.K0S5W9
PFAMs	MutL_C
Max annot lvl	2836\|Bacillariophyta
Evalue	8e-23
EggNOG OGs	COG0323@1\|root,KOG1977@2759\|Eukaryota,2XFVC@2836\|Bacillariophyta
Description	MutL C terminal dimerisation domain
COG category	L

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6896	Ggra6896	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 925124..926629 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6896.t1.stop1	Ggra6896.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 925124..925126 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6896.t1.CDS1	Ggra6896.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 925124..926629 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6896.t1.exon1	Ggra6896.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 925124..926629 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6896.t1.start1	Ggra6896.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 926627..926629 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6896.t1	Ggra6896.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 925124..926629 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:925124..926629-
coding sequence from alignment at tig00000056_pilon:925124..926629-

mRNA sequence

>Ggra6896.t1 ID=Ggra6896.t1|Name=Ggra6896.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=502bp
MRGAELLDKPAERSIGHGCELEVWEMFFTVPVRRRLQQGRDHLGVINSTR
NYIIPVVFANPDTRIVVEADGETKVLSWEGNGLSVDGIQAMLGTYGLSFS
SVRLQLGDNLITGFLSRSGFSNARVQYAALDGNPGAEWLSDIVKSAWKRF
LNCKASQSRRSLNQSQDKTGRHAAFVIRCDTSDRGKRKCLKQDEAIWIRR
EVHNELLMALFHILMGTRKRKAKWSNLNTPVETKGAFVLKRPRFEDAKVR
RRVFRPSIPVHRVRLVNKCSTQSFPDCALHKHVAEWCNPTCDNNASLGLQ
GGVWERKAMSIDKESLRKVHVVGQVDCKFLVVSDEKGLYAVDQHAASERD
LFERLLRKAQRGIKTVECLESINLSKERRQIASRHSDLLHRWGWHLTITE
EKILMTGIPSVCDVLMTKRHLLELLDEVCENDQGVLAGTIPEFVWRTVAT
VACHKAVRFGDRLSYEQSENVIRAMAMCDNPFSCAHGRPSIVPLAMFGSQ
E*

spliced messenger RNA

>Ggra6896.t1 ID=Ggra6896.t1|Name=Ggra6896.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1506bp|location=Sequence derived from alignment at tig00000056_pilon:925124..926629- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGGGGCAGAATTATTGGACAAGCCGGCGGAGAGAAGTATCGGTCA
TGGCTGCGAGCTTGAAGTTTGGGAGATGTTTTTCACCGTTCCGGTCCGTC
GTCGTTTGCAGCAGGGGCGTGATCATCTTGGGGTCATTAACTCAACACGA
AATTATATCATACCCGTTGTTTTCGCTAACCCAGACACACGCATTGTTGT
GGAAGCTGATGGTGAGACAAAAGTGTTGTCATGGGAGGGCAATGGACTCA
GTGTTGATGGAATTCAAGCAATGCTGGGGACGTACGGGCTATCGTTCTCA
TCAGTTCGCTTACAATTGGGAGACAATCTGATTACTGGGTTCTTGTCACG
TTCAGGGTTCTCGAATGCGAGAGTTCAGTATGCAGCTCTGGACGGAAATC
CTGGGGCGGAGTGGCTGTCTGACATTGTAAAGAGTGCATGGAAGAGATTT
TTAAATTGTAAAGCTTCTCAATCGAGACGGTCATTGAACCAAAGCCAGGA
CAAAACTGGACGCCATGCAGCGTTTGTGATACGATGCGATACAAGCGATC
GAGGAAAGAGGAAGTGCTTGAAGCAAGATGAAGCTATCTGGATACGGCGA
GAAGTACATAATGAGCTGCTCATGGCGTTGTTTCACATACTGATGGGAAC
AAGGAAACGGAAGGCGAAATGGAGCAACCTGAACACTCCAGTTGAAACTA
AGGGGGCTTTCGTTCTGAAGCGACCTCGATTCGAGGACGCTAAAGTACGA
AGAAGAGTCTTTCGACCTTCAATTCCAGTGCATCGCGTTCGGCTTGTAAA
CAAGTGTTCCACACAGTCGTTTCCAGATTGCGCTCTTCACAAGCATGTCG
CAGAGTGGTGTAACCCTACTTGCGACAATAATGCGTCTCTTGGATTACAA
GGAGGAGTTTGGGAGCGGAAAGCCATGTCCATAGATAAGGAAAGTCTTAG
GAAAGTTCATGTTGTAGGTCAAGTAGATTGCAAGTTCTTAGTAGTCTCTG
ACGAGAAAGGCTTGTATGCAGTCGACCAACACGCCGCTTCAGAACGGGAT
TTGTTCGAAAGGCTCTTACGCAAAGCCCAACGGGGAATTAAGACCGTGGA
ATGTCTGGAGAGCATTAACTTGTCCAAGGAAAGAAGGCAAATTGCGTCGC
GGCATTCGGACTTACTTCATAGATGGGGTTGGCACTTGACGATTACTGAA
GAAAAGATTCTGATGACAGGGATTCCGAGCGTTTGCGATGTGTTAATGAC
CAAGCGTCATCTTCTCGAACTTCTGGATGAAGTGTGCGAGAATGATCAGG
GAGTTTTAGCGGGGACCATTCCTGAGTTTGTATGGCGGACAGTTGCTACC
GTCGCTTGTCACAAAGCAGTGCGTTTTGGAGATCGTCTGTCATACGAGCA
AAGCGAAAATGTGATACGCGCCATGGCTATGTGTGACAATCCGTTTTCTT
GTGCACATGGAAGGCCGTCCATTGTTCCACTAGCTATGTTTGGGTCCCAG
GAGTAG

protein sequence of Ggra6896.t1

>Ggra6896.t1 ID=Ggra6896.t1|Name=Ggra6896.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=502bp
MRGAELLDKPAERSIGHGCELEVWEMFFTVPVRRRLQQGRDHLGVINSTR
NYIIPVVFANPDTRIVVEADGETKVLSWEGNGLSVDGIQAMLGTYGLSFS
SVRLQLGDNLITGFLSRSGFSNARVQYAALDGNPGAEWLSDIVKSAWKRF
LNCKASQSRRSLNQSQDKTGRHAAFVIRCDTSDRGKRKCLKQDEAIWIRR
EVHNELLMALFHILMGTRKRKAKWSNLNTPVETKGAFVLKRPRFEDAKVR
RRVFRPSIPVHRVRLVNKCSTQSFPDCALHKHVAEWCNPTCDNNASLGLQ
GGVWERKAMSIDKESLRKVHVVGQVDCKFLVVSDEKGLYAVDQHAASERD
LFERLLRKAQRGIKTVECLESINLSKERRQIASRHSDLLHRWGWHLTITE
EKILMTGIPSVCDVLMTKRHLLELLDEVCENDQGVLAGTIPEFVWRTVAT
VACHKAVRFGDRLSYEQSENVIRAMAMCDNPFSCAHGRPSIVPLAMFGSQ
E*

mRNA from alignment at tig00000056_pilon:925124..926629-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6896.t1 ID=Ggra6896.t1|Name=Ggra6896.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1506bp|location=Sequence derived from alignment at tig00000056_pilon:925124..926629- (Gracilaria gracilis GNS1m male)
ATGCGTGGGGCAGAATTATTGGACAAGCCGGCGGAGAGAAGTATCGGTCA
TGGCTGCGAGCTTGAAGTTTGGGAGATGTTTTTCACCGTTCCGGTCCGTC
GTCGTTTGCAGCAGGGGCGTGATCATCTTGGGGTCATTAACTCAACACGA
AATTATATCATACCCGTTGTTTTCGCTAACCCAGACACACGCATTGTTGT
GGAAGCTGATGGTGAGACAAAAGTGTTGTCATGGGAGGGCAATGGACTCA
GTGTTGATGGAATTCAAGCAATGCTGGGGACGTACGGGCTATCGTTCTCA
TCAGTTCGCTTACAATTGGGAGACAATCTGATTACTGGGTTCTTGTCACG
TTCAGGGTTCTCGAATGCGAGAGTTCAGTATGCAGCTCTGGACGGAAATC
CTGGGGCGGAGTGGCTGTCTGACATTGTAAAGAGTGCATGGAAGAGATTT
TTAAATTGTAAAGCTTCTCAATCGAGACGGTCATTGAACCAAAGCCAGGA
CAAAACTGGACGCCATGCAGCGTTTGTGATACGATGCGATACAAGCGATC
GAGGAAAGAGGAAGTGCTTGAAGCAAGATGAAGCTATCTGGATACGGCGA
GAAGTACATAATGAGCTGCTCATGGCGTTGTTTCACATACTGATGGGAAC
AAGGAAACGGAAGGCGAAATGGAGCAACCTGAACACTCCAGTTGAAACTA
AGGGGGCTTTCGTTCTGAAGCGACCTCGATTCGAGGACGCTAAAGTACGA
AGAAGAGTCTTTCGACCTTCAATTCCAGTGCATCGCGTTCGGCTTGTAAA
CAAGTGTTCCACACAGTCGTTTCCAGATTGCGCTCTTCACAAGCATGTCG
CAGAGTGGTGTAACCCTACTTGCGACAATAATGCGTCTCTTGGATTACAA
GGAGGAGTTTGGGAGCGGAAAGCCATGTCCATAGATAAGGAAAGTCTTAG
GAAAGTTCATGTTGTAGGTCAAGTAGATTGCAAGTTCTTAGTAGTCTCTG
ACGAGAAAGGCTTGTATGCAGTCGACCAACACGCCGCTTCAGAACGGGAT
TTGTTCGAAAGGCTCTTACGCAAAGCCCAACGGGGAATTAAGACCGTGGA
ATGTCTGGAGAGCATTAACTTGTCCAAGGAAAGAAGGCAAATTGCGTCGC
GGCATTCGGACTTACTTCATAGATGGGGTTGGCACTTGACGATTACTGAA
GAAAAGATTCTGATGACAGGGATTCCGAGCGTTTGCGATGTGTTAATGAC
CAAGCGTCATCTTCTCGAACTTCTGGATGAAGTGTGCGAGAATGATCAGG
GAGTTTTAGCGGGGACCATTCCTGAGTTTGTATGGCGGACAGTTGCTACC
GTCGCTTGTCACAAAGCAGTGCGTTTTGGAGATCGTCTGTCATACGAGCA
AAGCGAAAATGTGATACGCGCCATGGCTATGTGTGACAATCCGTTTTCTT
GTGCACATGGAAGGCCGTCCATTGTTCCACTAGCTATGTTTGGGTCCCAG
GAGTAG

Coding sequence (CDS) from alignment at tig00000056_pilon:925124..926629-

>Ggra6896.t1 ID=Ggra6896.t1|Name=Ggra6896.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1506bp|location=Sequence derived from alignment at tig00000056_pilon:925124..926629- (Gracilaria gracilis GNS1m male)
ATGCGTGGGGCAGAATTATTGGACAAGCCGGCGGAGAGAAGTATCGGTCA
TGGCTGCGAGCTTGAAGTTTGGGAGATGTTTTTCACCGTTCCGGTCCGTC
GTCGTTTGCAGCAGGGGCGTGATCATCTTGGGGTCATTAACTCAACACGA
AATTATATCATACCCGTTGTTTTCGCTAACCCAGACACACGCATTGTTGT
GGAAGCTGATGGTGAGACAAAAGTGTTGTCATGGGAGGGCAATGGACTCA
GTGTTGATGGAATTCAAGCAATGCTGGGGACGTACGGGCTATCGTTCTCA
TCAGTTCGCTTACAATTGGGAGACAATCTGATTACTGGGTTCTTGTCACG
TTCAGGGTTCTCGAATGCGAGAGTTCAGTATGCAGCTCTGGACGGAAATC
CTGGGGCGGAGTGGCTGTCTGACATTGTAAAGAGTGCATGGAAGAGATTT
TTAAATTGTAAAGCTTCTCAATCGAGACGGTCATTGAACCAAAGCCAGGA
CAAAACTGGACGCCATGCAGCGTTTGTGATACGATGCGATACAAGCGATC
GAGGAAAGAGGAAGTGCTTGAAGCAAGATGAAGCTATCTGGATACGGCGA
GAAGTACATAATGAGCTGCTCATGGCGTTGTTTCACATACTGATGGGAAC
AAGGAAACGGAAGGCGAAATGGAGCAACCTGAACACTCCAGTTGAAACTA
AGGGGGCTTTCGTTCTGAAGCGACCTCGATTCGAGGACGCTAAAGTACGA
AGAAGAGTCTTTCGACCTTCAATTCCAGTGCATCGCGTTCGGCTTGTAAA
CAAGTGTTCCACACAGTCGTTTCCAGATTGCGCTCTTCACAAGCATGTCG
CAGAGTGGTGTAACCCTACTTGCGACAATAATGCGTCTCTTGGATTACAA
GGAGGAGTTTGGGAGCGGAAAGCCATGTCCATAGATAAGGAAAGTCTTAG
GAAAGTTCATGTTGTAGGTCAAGTAGATTGCAAGTTCTTAGTAGTCTCTG
ACGAGAAAGGCTTGTATGCAGTCGACCAACACGCCGCTTCAGAACGGGAT
TTGTTCGAAAGGCTCTTACGCAAAGCCCAACGGGGAATTAAGACCGTGGA
ATGTCTGGAGAGCATTAACTTGTCCAAGGAAAGAAGGCAAATTGCGTCGC
GGCATTCGGACTTACTTCATAGATGGGGTTGGCACTTGACGATTACTGAA
GAAAAGATTCTGATGACAGGGATTCCGAGCGTTTGCGATGTGTTAATGAC
CAAGCGTCATCTTCTCGAACTTCTGGATGAAGTGTGCGAGAATGATCAGG
GAGTTTTAGCGGGGACCATTCCTGAGTTTGTATGGCGGACAGTTGCTACC
GTCGCTTGTCACAAAGCAGTGCGTTTTGGAGATCGTCTGTCATACGAGCA
AAGCGAAAATGTGATACGCGCCATGGCTATGTGTGACAATCCGTTTTCTT
GTGCACATGGAAGGCCGTCCATTGTTCCACTAGCTATGTTTGGGTCCCAG
GAGTAG