Ggra6895.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6895.t1
Unique Name	Ggra6895.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	728

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:922239..924422 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	42099.EPrPV00000013788
PFAMs	DEAD,HA2,Helicase_C,OB_NTP_bind
Max annot lvl	121069\|Pythiales
Evalue	2.09e-131
EggNOG OGs	COG1643@1\|root,KOG0922@2759\|Eukaryota,1MDYD@121069\|Pythiales
Description	DEAD DEAH box RNA helicase. Source PGD
COG category	A

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6895	Ggra6895	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 922239..924422 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6895.t1.stop1	Ggra6895.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 922239..922241 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6895.t1.CDS1	Ggra6895.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 922239..924422 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6895.t1.exon1	Ggra6895.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 922239..924422 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6895.t1.start1	Ggra6895.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 924420..924422 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6895.t1	Ggra6895.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 922239..924422 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:922239..924422-
coding sequence from alignment at tig00000056_pilon:922239..924422-

mRNA sequence

>Ggra6895.t1 ID=Ggra6895.t1|Name=Ggra6895.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=728bp
MKRKRSTEIVVEKDLSLPVLQKSQEILSALAANDVLILVSETGSGKTTQL
PQIILDNSPGSSVLVTQPRRVAAITVATRVAEERGSMLGDTVGFAVRFEN
KSSRTATRIRYVTDGVLLRETLSDGFSALKRRYSHVIIDEVHERSVNTDI
VLGVIKETLSPPISPGENQKPLTGLSGLIRSKLAFKVVIMSATTDAEKIA
HFFRNGTDLSVKQLGISGRIYKINMMFATEPVTDYVDGAVEAALQVHTGY
PTSGHILVFLPGQEDIMSAIGLLKAKLRHQLSKDQRRSVIILPLFAAQPP
SEQLRAIADLPEKMRATHRKIIFATNIAETSITIPGVSYVVDSGVAKVRT
LIPHNGLYTEVLRVQPISQAQAEQRKGRAGRTGPGALFRLYTQDHYNKLE
KYPKPEILRVDATATQLQIIALTHFGRKRTEQNHLRFPLLDKVPRHARER
GLETLYALGAVDKNMKLTETGELMARIPATPMLARSLLESLRLGCVDSMV
STAAILSVEGSVLFRPPNKIEQAKAAHRRFVSSHGDHLTLVNALHAYLQR
APTRKQEFCKDHFLNYRTLASAENIRNQLSVVMQQADMVSWGLTHPFPNG
VLEELEDSSSEDLVRRCLVAGYFRHVARRRSEDGKYVPIGNAKGIGSFEH
GADIHPSSSFRTFKQKRIPTLVIYNELVWTTKIYLRTVCSIEHSWVPLHS
CNYLKLRNFGVEDRPDARRNPDSGIQK*

spliced messenger RNA

>Ggra6895.t1 ID=Ggra6895.t1|Name=Ggra6895.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2184bp|location=Sequence derived from alignment at tig00000056_pilon:922239..924422- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAGAAAACGATCAACGGAGATTGTCGTTGAGAAAGATCTAAGTCT
TCCTGTTCTGCAGAAGTCCCAAGAAATACTCTCTGCTCTTGCGGCTAATG
ATGTCTTAATCCTTGTATCGGAAACCGGTTCGGGAAAAACTACCCAACTC
CCTCAAATCATTCTCGACAACTCACCGGGCTCGTCTGTGCTCGTAACTCA
ACCTCGTCGCGTTGCCGCTATAACAGTTGCGACTCGTGTGGCAGAAGAGC
GCGGATCAATGCTAGGAGATACCGTTGGTTTTGCCGTTCGCTTCGAAAAT
AAGTCGAGTCGAACTGCAACAAGAATACGCTATGTCACAGATGGAGTTCT
CTTACGTGAAACACTTTCCGACGGATTCTCAGCTTTAAAGAGGCGCTATT
CACATGTCATTATCGATGAAGTCCATGAGCGTTCCGTTAACACTGACATT
GTCCTAGGCGTTATCAAGGAAACGCTTTCACCGCCGATCTCTCCCGGGGA
GAACCAGAAACCGCTCACTGGACTCTCTGGGCTTATTAGAAGCAAGTTAG
CTTTCAAAGTTGTAATCATGTCGGCTACAACGGATGCCGAGAAGATCGCC
CACTTCTTCCGGAATGGGACAGACTTAAGTGTTAAACAGCTTGGTATCTC
TGGTCGAATTTATAAAATCAACATGATGTTTGCTACGGAGCCTGTTACGG
ATTATGTTGACGGGGCTGTTGAAGCAGCGCTTCAAGTACACACTGGATAC
CCAACCTCGGGGCATATTCTCGTTTTTCTTCCTGGCCAAGAGGATATAAT
GTCTGCAATTGGTCTTCTCAAGGCAAAGTTACGGCACCAGCTCAGTAAGG
ACCAAAGAAGGTCGGTCATTATTCTTCCTTTATTCGCAGCGCAACCACCA
TCTGAACAGCTACGAGCCATTGCAGACTTACCGGAAAAAATGCGTGCAAC
CCATCGCAAGATCATCTTCGCAACAAACATAGCAGAGACAAGCATTACCA
TCCCTGGCGTTAGCTATGTTGTGGACAGTGGTGTTGCGAAAGTAAGAACT
CTTATTCCGCATAACGGTTTGTACACAGAGGTGCTTCGTGTTCAACCCAT
TAGCCAGGCACAAGCGGAGCAGCGCAAGGGTAGAGCAGGGCGTACCGGCC
CAGGAGCTCTCTTTCGGCTATACACACAGGACCATTATAACAAGCTTGAA
AAGTATCCCAAACCGGAAATTCTTCGGGTTGATGCCACGGCAACACAGCT
TCAGATCATTGCCCTAACACATTTTGGGCGGAAGCGAACTGAACAAAACC
ATTTGCGTTTTCCATTGTTGGACAAGGTCCCTCGACATGCGCGCGAACGG
GGTCTGGAAACTCTCTATGCTCTCGGTGCGGTTGACAAGAATATGAAACT
AACGGAAACAGGCGAGCTTATGGCACGGATCCCTGCTACCCCTATGCTCG
CGAGAAGTCTGTTGGAGTCATTGAGGTTAGGATGCGTTGATTCGATGGTT
TCGACAGCGGCCATCCTCAGCGTAGAAGGATCAGTTCTCTTTAGACCACC
AAACAAGATTGAACAGGCAAAAGCAGCGCATCGGCGCTTCGTGAGTTCAC
ATGGAGACCATTTAACACTGGTAAACGCACTTCACGCGTACTTGCAGCGG
GCACCTACAAGAAAACAAGAGTTCTGCAAAGACCACTTCCTCAATTACCG
TACACTGGCATCTGCTGAGAATATCAGGAATCAGCTTTCGGTGGTCATGC
AGCAAGCAGACATGGTTTCTTGGGGCCTAACCCATCCATTCCCGAACGGC
GTCTTAGAAGAACTAGAAGATTCCAGTTCAGAGGATCTTGTGCGGAGGTG
CCTGGTAGCTGGCTATTTCCGACACGTTGCGAGAAGGCGGAGTGAGGATG
GGAAATATGTTCCAATTGGCAACGCGAAAGGAATTGGTTCCTTTGAACAC
GGGGCGGACATACATCCTAGTTCTTCGTTCAGGACGTTTAAGCAAAAGAG
AATTCCAACTCTCGTCATATACAATGAGCTAGTATGGACTACAAAGATCT
ATTTGCGAACAGTATGCAGTATCGAGCATTCCTGGGTTCCTCTGCACAGC
TGTAACTATCTCAAACTCAGGAACTTCGGTGTCGAAGATCGACCTGACGC
TCGGCGAAATCCAGACTCTGGAATTCAGAAGTAA

protein sequence of Ggra6895.t1

>Ggra6895.t1 ID=Ggra6895.t1|Name=Ggra6895.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=728bp
MKRKRSTEIVVEKDLSLPVLQKSQEILSALAANDVLILVSETGSGKTTQL
PQIILDNSPGSSVLVTQPRRVAAITVATRVAEERGSMLGDTVGFAVRFEN
KSSRTATRIRYVTDGVLLRETLSDGFSALKRRYSHVIIDEVHERSVNTDI
VLGVIKETLSPPISPGENQKPLTGLSGLIRSKLAFKVVIMSATTDAEKIA
HFFRNGTDLSVKQLGISGRIYKINMMFATEPVTDYVDGAVEAALQVHTGY
PTSGHILVFLPGQEDIMSAIGLLKAKLRHQLSKDQRRSVIILPLFAAQPP
SEQLRAIADLPEKMRATHRKIIFATNIAETSITIPGVSYVVDSGVAKVRT
LIPHNGLYTEVLRVQPISQAQAEQRKGRAGRTGPGALFRLYTQDHYNKLE
KYPKPEILRVDATATQLQIIALTHFGRKRTEQNHLRFPLLDKVPRHARER
GLETLYALGAVDKNMKLTETGELMARIPATPMLARSLLESLRLGCVDSMV
STAAILSVEGSVLFRPPNKIEQAKAAHRRFVSSHGDHLTLVNALHAYLQR
APTRKQEFCKDHFLNYRTLASAENIRNQLSVVMQQADMVSWGLTHPFPNG
VLEELEDSSSEDLVRRCLVAGYFRHVARRRSEDGKYVPIGNAKGIGSFEH
GADIHPSSSFRTFKQKRIPTLVIYNELVWTTKIYLRTVCSIEHSWVPLHS
CNYLKLRNFGVEDRPDARRNPDSGIQK*

mRNA from alignment at tig00000056_pilon:922239..924422-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6895.t1 ID=Ggra6895.t1|Name=Ggra6895.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2184bp|location=Sequence derived from alignment at tig00000056_pilon:922239..924422- (Gracilaria gracilis GNS1m male)
ATGAAGAGAAAACGATCAACGGAGATTGTCGTTGAGAAAGATCTAAGTCT
TCCTGTTCTGCAGAAGTCCCAAGAAATACTCTCTGCTCTTGCGGCTAATG
ATGTCTTAATCCTTGTATCGGAAACCGGTTCGGGAAAAACTACCCAACTC
CCTCAAATCATTCTCGACAACTCACCGGGCTCGTCTGTGCTCGTAACTCA
ACCTCGTCGCGTTGCCGCTATAACAGTTGCGACTCGTGTGGCAGAAGAGC
GCGGATCAATGCTAGGAGATACCGTTGGTTTTGCCGTTCGCTTCGAAAAT
AAGTCGAGTCGAACTGCAACAAGAATACGCTATGTCACAGATGGAGTTCT
CTTACGTGAAACACTTTCCGACGGATTCTCAGCTTTAAAGAGGCGCTATT
CACATGTCATTATCGATGAAGTCCATGAGCGTTCCGTTAACACTGACATT
GTCCTAGGCGTTATCAAGGAAACGCTTTCACCGCCGATCTCTCCCGGGGA
GAACCAGAAACCGCTCACTGGACTCTCTGGGCTTATTAGAAGCAAGTTAG
CTTTCAAAGTTGTAATCATGTCGGCTACAACGGATGCCGAGAAGATCGCC
CACTTCTTCCGGAATGGGACAGACTTAAGTGTTAAACAGCTTGGTATCTC
TGGTCGAATTTATAAAATCAACATGATGTTTGCTACGGAGCCTGTTACGG
ATTATGTTGACGGGGCTGTTGAAGCAGCGCTTCAAGTACACACTGGATAC
CCAACCTCGGGGCATATTCTCGTTTTTCTTCCTGGCCAAGAGGATATAAT
GTCTGCAATTGGTCTTCTCAAGGCAAAGTTACGGCACCAGCTCAGTAAGG
ACCAAAGAAGGTCGGTCATTATTCTTCCTTTATTCGCAGCGCAACCACCA
TCTGAACAGCTACGAGCCATTGCAGACTTACCGGAAAAAATGCGTGCAAC
CCATCGCAAGATCATCTTCGCAACAAACATAGCAGAGACAAGCATTACCA
TCCCTGGCGTTAGCTATGTTGTGGACAGTGGTGTTGCGAAAGTAAGAACT
CTTATTCCGCATAACGGTTTGTACACAGAGGTGCTTCGTGTTCAACCCAT
TAGCCAGGCACAAGCGGAGCAGCGCAAGGGTAGAGCAGGGCGTACCGGCC
CAGGAGCTCTCTTTCGGCTATACACACAGGACCATTATAACAAGCTTGAA
AAGTATCCCAAACCGGAAATTCTTCGGGTTGATGCCACGGCAACACAGCT
TCAGATCATTGCCCTAACACATTTTGGGCGGAAGCGAACTGAACAAAACC
ATTTGCGTTTTCCATTGTTGGACAAGGTCCCTCGACATGCGCGCGAACGG
GGTCTGGAAACTCTCTATGCTCTCGGTGCGGTTGACAAGAATATGAAACT
AACGGAAACAGGCGAGCTTATGGCACGGATCCCTGCTACCCCTATGCTCG
CGAGAAGTCTGTTGGAGTCATTGAGGTTAGGATGCGTTGATTCGATGGTT
TCGACAGCGGCCATCCTCAGCGTAGAAGGATCAGTTCTCTTTAGACCACC
AAACAAGATTGAACAGGCAAAAGCAGCGCATCGGCGCTTCGTGAGTTCAC
ATGGAGACCATTTAACACTGGTAAACGCACTTCACGCGTACTTGCAGCGG
GCACCTACAAGAAAACAAGAGTTCTGCAAAGACCACTTCCTCAATTACCG
TACACTGGCATCTGCTGAGAATATCAGGAATCAGCTTTCGGTGGTCATGC
AGCAAGCAGACATGGTTTCTTGGGGCCTAACCCATCCATTCCCGAACGGC
GTCTTAGAAGAACTAGAAGATTCCAGTTCAGAGGATCTTGTGCGGAGGTG
CCTGGTAGCTGGCTATTTCCGACACGTTGCGAGAAGGCGGAGTGAGGATG
GGAAATATGTTCCAATTGGCAACGCGAAAGGAATTGGTTCCTTTGAACAC
GGGGCGGACATACATCCTAGTTCTTCGTTCAGGACGTTTAAGCAAAAGAG
AATTCCAACTCTCGTCATATACAATGAGCTAGTATGGACTACAAAGATCT
ATTTGCGAACAGTATGCAGTATCGAGCATTCCTGGGTTCCTCTGCACAGC
TGTAACTATCTCAAACTCAGGAACTTCGGTGTCGAAGATCGACCTGACGC
TCGGCGAAATCCAGACTCTGGAATTCAGAAGTAA

Coding sequence (CDS) from alignment at tig00000056_pilon:922239..924422-

>Ggra6895.t1 ID=Ggra6895.t1|Name=Ggra6895.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2184bp|location=Sequence derived from alignment at tig00000056_pilon:922239..924422- (Gracilaria gracilis GNS1m male)
ATGAAGAGAAAACGATCAACGGAGATTGTCGTTGAGAAAGATCTAAGTCT
TCCTGTTCTGCAGAAGTCCCAAGAAATACTCTCTGCTCTTGCGGCTAATG
ATGTCTTAATCCTTGTATCGGAAACCGGTTCGGGAAAAACTACCCAACTC
CCTCAAATCATTCTCGACAACTCACCGGGCTCGTCTGTGCTCGTAACTCA
ACCTCGTCGCGTTGCCGCTATAACAGTTGCGACTCGTGTGGCAGAAGAGC
GCGGATCAATGCTAGGAGATACCGTTGGTTTTGCCGTTCGCTTCGAAAAT
AAGTCGAGTCGAACTGCAACAAGAATACGCTATGTCACAGATGGAGTTCT
CTTACGTGAAACACTTTCCGACGGATTCTCAGCTTTAAAGAGGCGCTATT
CACATGTCATTATCGATGAAGTCCATGAGCGTTCCGTTAACACTGACATT
GTCCTAGGCGTTATCAAGGAAACGCTTTCACCGCCGATCTCTCCCGGGGA
GAACCAGAAACCGCTCACTGGACTCTCTGGGCTTATTAGAAGCAAGTTAG
CTTTCAAAGTTGTAATCATGTCGGCTACAACGGATGCCGAGAAGATCGCC
CACTTCTTCCGGAATGGGACAGACTTAAGTGTTAAACAGCTTGGTATCTC
TGGTCGAATTTATAAAATCAACATGATGTTTGCTACGGAGCCTGTTACGG
ATTATGTTGACGGGGCTGTTGAAGCAGCGCTTCAAGTACACACTGGATAC
CCAACCTCGGGGCATATTCTCGTTTTTCTTCCTGGCCAAGAGGATATAAT
GTCTGCAATTGGTCTTCTCAAGGCAAAGTTACGGCACCAGCTCAGTAAGG
ACCAAAGAAGGTCGGTCATTATTCTTCCTTTATTCGCAGCGCAACCACCA
TCTGAACAGCTACGAGCCATTGCAGACTTACCGGAAAAAATGCGTGCAAC
CCATCGCAAGATCATCTTCGCAACAAACATAGCAGAGACAAGCATTACCA
TCCCTGGCGTTAGCTATGTTGTGGACAGTGGTGTTGCGAAAGTAAGAACT
CTTATTCCGCATAACGGTTTGTACACAGAGGTGCTTCGTGTTCAACCCAT
TAGCCAGGCACAAGCGGAGCAGCGCAAGGGTAGAGCAGGGCGTACCGGCC
CAGGAGCTCTCTTTCGGCTATACACACAGGACCATTATAACAAGCTTGAA
AAGTATCCCAAACCGGAAATTCTTCGGGTTGATGCCACGGCAACACAGCT
TCAGATCATTGCCCTAACACATTTTGGGCGGAAGCGAACTGAACAAAACC
ATTTGCGTTTTCCATTGTTGGACAAGGTCCCTCGACATGCGCGCGAACGG
GGTCTGGAAACTCTCTATGCTCTCGGTGCGGTTGACAAGAATATGAAACT
AACGGAAACAGGCGAGCTTATGGCACGGATCCCTGCTACCCCTATGCTCG
CGAGAAGTCTGTTGGAGTCATTGAGGTTAGGATGCGTTGATTCGATGGTT
TCGACAGCGGCCATCCTCAGCGTAGAAGGATCAGTTCTCTTTAGACCACC
AAACAAGATTGAACAGGCAAAAGCAGCGCATCGGCGCTTCGTGAGTTCAC
ATGGAGACCATTTAACACTGGTAAACGCACTTCACGCGTACTTGCAGCGG
GCACCTACAAGAAAACAAGAGTTCTGCAAAGACCACTTCCTCAATTACCG
TACACTGGCATCTGCTGAGAATATCAGGAATCAGCTTTCGGTGGTCATGC
AGCAAGCAGACATGGTTTCTTGGGGCCTAACCCATCCATTCCCGAACGGC
GTCTTAGAAGAACTAGAAGATTCCAGTTCAGAGGATCTTGTGCGGAGGTG
CCTGGTAGCTGGCTATTTCCGACACGTTGCGAGAAGGCGGAGTGAGGATG
GGAAATATGTTCCAATTGGCAACGCGAAAGGAATTGGTTCCTTTGAACAC
GGGGCGGACATACATCCTAGTTCTTCGTTCAGGACGTTTAAGCAAAAGAG
AATTCCAACTCTCGTCATATACAATGAGCTAGTATGGACTACAAAGATCT
ATTTGCGAACAGTATGCAGTATCGAGCATTCCTGGGTTCCTCTGCACAGC
TGTAACTATCTCAAACTCAGGAACTTCGGTGTCGAAGATCGACCTGACGC
TCGGCGAAATCCAGACTCTGGAATTCAGAAGTAA