Ggra6890.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6890.t1
Unique NameGgra6890.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length474
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:899213..900634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708251.1
PFAMsTrp_Tyr_perm
Max annot lvl2759|Eukaryota
Evalue5.26e-45
EggNOG OGs2C3E9@1|root,2RZCA@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6890Ggra6890Gracilaria gracilis GNS1m malegenetig00000056_pilon 899213..900634 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6890.t1.stop1Ggra6890.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 899213..899215 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6890.t1.CDS1Ggra6890.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 899213..900634 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6890.t1.exon1Ggra6890.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 899213..900634 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6890.t1.start1Ggra6890.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 900632..900634 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6890.t1Ggra6890.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 899213..900634 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6890.t1 ID=Ggra6890.t1|Name=Ggra6890.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=474bp
MRPPLGSLVQATAVSVATVLGTGILALPVSLHASGLRPFVALFAANLLAQ
LGVVIAATELLQRAYFAPHAAAYQRVGEHARLHAAAPPSLHSLAARYVPA
AAPRRLFAVVVMMHFLFILCAYAIAAPQAYVALFPPLARVPLRVLQLLFV
LLSALLITLAYRTLLPSLTVATIAKAALLAVLVMLTLARALSIRQPVAHS
WKLPLLVDPLLVGTIALSGVVNLMPVTFQKCVDSLPPDADATVDAHFISA
YRTATIVAIVICFVLNVSWCVAVLYVVPQSSPLSVTDVVRAAAPHSLPCA
SLEDAYQKGQISTIPLIKVLNCRHDELDSVISFIVNLFIAVSVTVSFLVM
SMGMKHYIDGTAKETTESDTDYNKTRWTRYAIYFSIVLATALSNPQGLFR
IMEGVTTLALNIEAGLFILYMLYQSRNQDELCGVPAPLSSLHASLIYVGV
GLYFVLVISVDAFYYLPSSLLKR*
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spliced messenger RNA

>Ggra6890.t1 ID=Ggra6890.t1|Name=Ggra6890.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00000056_pilon:899213..900634- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCCGCCGCTCGGCAGCTTGGTGCAGGCCACGGCCGTGAGCGTGGC
CACCGTGCTGGGCACGGGCATCCTCGCGCTGCCCGTGTCGCTGCACGCGT
CCGGACTGCGCCCGTTCGTGGCGCTGTTTGCGGCCAACCTGCTGGCGCAG
CTCGGCGTGGTGATCGCCGCCACCGAGCTGCTACAGCGCGCGTACTTCGC
GCCGCACGCCGCCGCCTACCAGCGCGTGGGCGAGCACGCGCGTCTGCACG
CCGCCGCGCCGCCGTCGCTACACTCGCTGGCCGCGCGCTACGTGCCGGCC
GCCGCGCCGCGCCGCCTGTTTGCCGTCGTCGTCATGATGCACTTCCTGTT
CATTCTGTGCGCGTACGCCATCGCCGCGCCGCAGGCGTACGTCGCGCTGT
TTCCGCCGCTGGCGCGCGTGCCGCTGCGCGTGCTGCAGCTGCTGTTTGTG
TTGCTGTCGGCGCTGCTCATCACGCTGGCGTATCGCACCCTGTTGCCGTC
GCTTACCGTCGCTACCATCGCCAAGGCCGCGCTGCTCGCCGTTCTGGTGA
TGCTCACGTTGGCGCGCGCGCTCTCCATTCGCCAGCCCGTCGCGCACTCG
TGGAAGCTGCCGCTGTTGGTTGACCCGCTGCTCGTCGGTACCATCGCGCT
CAGCGGCGTCGTCAACCTCATGCCTGTCACTTTCCAAAAGTGCGTAGATT
CGTTGCCACCAGATGCCGACGCTACCGTCGATGCGCACTTTATTTCCGCA
TACCGCACCGCCACTATTGTAGCTATTGTCATCTGTTTCGTGCTCAACGT
CTCGTGGTGCGTCGCTGTTCTCTATGTTGTGCCGCAGTCGTCGCCTTTGA
GTGTCACCGACGTAGTTCGCGCTGCTGCTCCCCACTCTCTCCCGTGCGCT
TCGTTAGAGGATGCCTATCAGAAGGGCCAAATCAGTACCATTCCTCTCAT
CAAGGTGCTCAACTGTCGCCACGACGAGCTGGATTCCGTCATCTCCTTCA
TCGTCAATCTCTTCATCGCCGTCAGCGTCACTGTCTCATTCCTTGTCATG
TCCATGGGAATGAAGCACTACATTGACGGCACCGCCAAAGAAACCACCGA
GTCCGACACCGACTACAACAAGACTCGCTGGACCAGATATGCCATCTACT
TCTCCATTGTTTTGGCAACCGCTCTGTCAAACCCGCAGGGGCTCTTTCGC
ATCATGGAAGGTGTCACCACTCTGGCGCTCAACATCGAGGCTGGTTTGTT
CATTCTGTACATGCTCTACCAAAGTCGAAACCAGGACGAGCTGTGTGGCG
TTCCGGCTCCGCTTTCATCACTGCATGCGTCTCTCATTTACGTTGGCGTC
GGTCTTTACTTCGTGCTGGTCATTTCAGTTGATGCTTTCTACTACTTACC
ATCAAGCTTGCTAAAGCGATGA
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protein sequence of Ggra6890.t1

>Ggra6890.t1 ID=Ggra6890.t1|Name=Ggra6890.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=474bp
MRPPLGSLVQATAVSVATVLGTGILALPVSLHASGLRPFVALFAANLLAQ
LGVVIAATELLQRAYFAPHAAAYQRVGEHARLHAAAPPSLHSLAARYVPA
AAPRRLFAVVVMMHFLFILCAYAIAAPQAYVALFPPLARVPLRVLQLLFV
LLSALLITLAYRTLLPSLTVATIAKAALLAVLVMLTLARALSIRQPVAHS
WKLPLLVDPLLVGTIALSGVVNLMPVTFQKCVDSLPPDADATVDAHFISA
YRTATIVAIVICFVLNVSWCVAVLYVVPQSSPLSVTDVVRAAAPHSLPCA
SLEDAYQKGQISTIPLIKVLNCRHDELDSVISFIVNLFIAVSVTVSFLVM
SMGMKHYIDGTAKETTESDTDYNKTRWTRYAIYFSIVLATALSNPQGLFR
IMEGVTTLALNIEAGLFILYMLYQSRNQDELCGVPAPLSSLHASLIYVGV
GLYFVLVISVDAFYYLPSSLLKR*
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mRNA from alignment at tig00000056_pilon:899213..900634-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6890.t1 ID=Ggra6890.t1|Name=Ggra6890.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00000056_pilon:899213..900634- (Gracilaria gracilis GNS1m male)
ATGCGCCCGCCGCTCGGCAGCTTGGTGCAGGCCACGGCCGTGAGCGTGGC
CACCGTGCTGGGCACGGGCATCCTCGCGCTGCCCGTGTCGCTGCACGCGT
CCGGACTGCGCCCGTTCGTGGCGCTGTTTGCGGCCAACCTGCTGGCGCAG
CTCGGCGTGGTGATCGCCGCCACCGAGCTGCTACAGCGCGCGTACTTCGC
GCCGCACGCCGCCGCCTACCAGCGCGTGGGCGAGCACGCGCGTCTGCACG
CCGCCGCGCCGCCGTCGCTACACTCGCTGGCCGCGCGCTACGTGCCGGCC
GCCGCGCCGCGCCGCCTGTTTGCCGTCGTCGTCATGATGCACTTCCTGTT
CATTCTGTGCGCGTACGCCATCGCCGCGCCGCAGGCGTACGTCGCGCTGT
TTCCGCCGCTGGCGCGCGTGCCGCTGCGCGTGCTGCAGCTGCTGTTTGTG
TTGCTGTCGGCGCTGCTCATCACGCTGGCGTATCGCACCCTGTTGCCGTC
GCTTACCGTCGCTACCATCGCCAAGGCCGCGCTGCTCGCCGTTCTGGTGA
TGCTCACGTTGGCGCGCGCGCTCTCCATTCGCCAGCCCGTCGCGCACTCG
TGGAAGCTGCCGCTGTTGGTTGACCCGCTGCTCGTCGGTACCATCGCGCT
CAGCGGCGTCGTCAACCTCATGCCTGTCACTTTCCAAAAGTGCGTAGATT
CGTTGCCACCAGATGCCGACGCTACCGTCGATGCGCACTTTATTTCCGCA
TACCGCACCGCCACTATTGTAGCTATTGTCATCTGTTTCGTGCTCAACGT
CTCGTGGTGCGTCGCTGTTCTCTATGTTGTGCCGCAGTCGTCGCCTTTGA
GTGTCACCGACGTAGTTCGCGCTGCTGCTCCCCACTCTCTCCCGTGCGCT
TCGTTAGAGGATGCCTATCAGAAGGGCCAAATCAGTACCATTCCTCTCAT
CAAGGTGCTCAACTGTCGCCACGACGAGCTGGATTCCGTCATCTCCTTCA
TCGTCAATCTCTTCATCGCCGTCAGCGTCACTGTCTCATTCCTTGTCATG
TCCATGGGAATGAAGCACTACATTGACGGCACCGCCAAAGAAACCACCGA
GTCCGACACCGACTACAACAAGACTCGCTGGACCAGATATGCCATCTACT
TCTCCATTGTTTTGGCAACCGCTCTGTCAAACCCGCAGGGGCTCTTTCGC
ATCATGGAAGGTGTCACCACTCTGGCGCTCAACATCGAGGCTGGTTTGTT
CATTCTGTACATGCTCTACCAAAGTCGAAACCAGGACGAGCTGTGTGGCG
TTCCGGCTCCGCTTTCATCACTGCATGCGTCTCTCATTTACGTTGGCGTC
GGTCTTTACTTCGTGCTGGTCATTTCAGTTGATGCTTTCTACTACTTACC
ATCAAGCTTGCTAAAGCGATGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:899213..900634-

>Ggra6890.t1 ID=Ggra6890.t1|Name=Ggra6890.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1422bp|location=Sequence derived from alignment at tig00000056_pilon:899213..900634- (Gracilaria gracilis GNS1m male)
ATGCGCCCGCCGCTCGGCAGCTTGGTGCAGGCCACGGCCGTGAGCGTGGC
CACCGTGCTGGGCACGGGCATCCTCGCGCTGCCCGTGTCGCTGCACGCGT
CCGGACTGCGCCCGTTCGTGGCGCTGTTTGCGGCCAACCTGCTGGCGCAG
CTCGGCGTGGTGATCGCCGCCACCGAGCTGCTACAGCGCGCGTACTTCGC
GCCGCACGCCGCCGCCTACCAGCGCGTGGGCGAGCACGCGCGTCTGCACG
CCGCCGCGCCGCCGTCGCTACACTCGCTGGCCGCGCGCTACGTGCCGGCC
GCCGCGCCGCGCCGCCTGTTTGCCGTCGTCGTCATGATGCACTTCCTGTT
CATTCTGTGCGCGTACGCCATCGCCGCGCCGCAGGCGTACGTCGCGCTGT
TTCCGCCGCTGGCGCGCGTGCCGCTGCGCGTGCTGCAGCTGCTGTTTGTG
TTGCTGTCGGCGCTGCTCATCACGCTGGCGTATCGCACCCTGTTGCCGTC
GCTTACCGTCGCTACCATCGCCAAGGCCGCGCTGCTCGCCGTTCTGGTGA
TGCTCACGTTGGCGCGCGCGCTCTCCATTCGCCAGCCCGTCGCGCACTCG
TGGAAGCTGCCGCTGTTGGTTGACCCGCTGCTCGTCGGTACCATCGCGCT
CAGCGGCGTCGTCAACCTCATGCCTGTCACTTTCCAAAAGTGCGTAGATT
CGTTGCCACCAGATGCCGACGCTACCGTCGATGCGCACTTTATTTCCGCA
TACCGCACCGCCACTATTGTAGCTATTGTCATCTGTTTCGTGCTCAACGT
CTCGTGGTGCGTCGCTGTTCTCTATGTTGTGCCGCAGTCGTCGCCTTTGA
GTGTCACCGACGTAGTTCGCGCTGCTGCTCCCCACTCTCTCCCGTGCGCT
TCGTTAGAGGATGCCTATCAGAAGGGCCAAATCAGTACCATTCCTCTCAT
CAAGGTGCTCAACTGTCGCCACGACGAGCTGGATTCCGTCATCTCCTTCA
TCGTCAATCTCTTCATCGCCGTCAGCGTCACTGTCTCATTCCTTGTCATG
TCCATGGGAATGAAGCACTACATTGACGGCACCGCCAAAGAAACCACCGA
GTCCGACACCGACTACAACAAGACTCGCTGGACCAGATATGCCATCTACT
TCTCCATTGTTTTGGCAACCGCTCTGTCAAACCCGCAGGGGCTCTTTCGC
ATCATGGAAGGTGTCACCACTCTGGCGCTCAACATCGAGGCTGGTTTGTT
CATTCTGTACATGCTCTACCAAAGTCGAAACCAGGACGAGCTGTGTGGCG
TTCCGGCTCCGCTTTCATCACTGCATGCGTCTCTCATTTACGTTGGCGTC
GGTCTTTACTTCGTGCTGGTCATTTCAGTTGATGCTTTCTACTACTTACC
ATCAAGCTTGCTAAAGCGATGA
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