Ggra6885.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6885.t1
Unique NameGgra6885.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length452
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:838566..839921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706154.1
Preferred nameVPS4B
PFAMsAAA,MIT,Vps4_C
Max annot lvl2759|Eukaryota
KEGG koko:K12196
KEGG Pathwayko04144,ko04217,map04144,map04217
KEGG ModuleM00412
GOsGO:0000070,GO:0000075,GO:0000166,GO:0000278,GO:0000280,GO:0000323,GO:0000819,GO:0000910,GO:0000916,GO:0000920,GO:0000922,GO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0002790,GO:0003002,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005764,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005783,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005886,GO:0006508,GO:0006511,GO:0006605,GO:0006622,GO:0006623,GO:0006629,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006869,GO:0006886,GO:0006900,GO:0006906,GO:0006914,GO:0006996,GO:0006997,GO:0006998,GO:0007010,GO:0007032,GO:0007033,GO:0007034,GO:0007041,GO:0007049,GO:0007059,GO:0007080,GO:0007088,GO:0007093,GO:0007163,GO:0007275,GO:0007346,GO:0007389,GO:0007399,GO:0007423,GO:0007610,GO:0007638,GO:0008022,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008202,GO:0008333,GO:0008593,GO:0009056,GO:0009057,GO:0009306,GO:0009405,GO:0009605,GO:0009612,GO:0009628,GO:0009653,GO:0009838,GO:0009887,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010008,GO:0010033,GO:0010035,GO:0010038,GO:0010226,GO:0010256,GO:0010389,GO:0010564,GO:0010638,GO:0010646,GO:0010647,GO:0010648,GO:0010824,GO:0010825,GO:0010876,GO:0010941,GO:0010948,GO:0010971,GO:0010972,GO:0012505,GO:0015031,GO:0015630,GO:0015672,GO:0015833,GO:0015850,GO:0015918,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016125,GO:0016192,GO:0016197,GO:0016236,GO:0016322,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017016,GO:0017048,GO:0017076,GO:0017111,GO:0017157,GO:0019058,GO:0019068,GO:0019076,GO:0019538,GO:0019899,GO:0019904,GO:0019941,GO:0021700,GO:0022008,GO:0022402,GO:0022411,GO:0022607,GO:0023051,GO:0023056,GO:0023057,GO:0030001,GO:0030029,GO:0030036,GO:0030154,GO:0030163,GO:0030182,GO:0030301,GO:0030447,GO:0030448,GO:0030496,GO:0030554,GO:0030865,GO:0030866,GO:0031032,GO:0031090,GO:0031267,GO:0031410,GO:0031468,GO:0031982,GO:0032365,GO:0032366,GO:0032367,GO:0032465,GO:0032466,GO:0032501,GO:0032502,GO:0032506,GO:0032507,GO:0032509,GO:0032510,GO:0032511,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0032886,GO:0032940,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0033993,GO:0034058,GO:0034067,GO:0034613,GO:0035088,GO:0035418,GO:0035639,GO:0035890,GO:0035891,GO:0036094,GO:0036213,GO:0036257,GO:0036258,GO:0036452,GO:0039702,GO:0040007,GO:0040008,GO:0040011,GO:0040012,GO:0040017,GO:0042051,GO:0042058,GO:0042221,GO:0042461,GO:0042462,GO:0042551,GO:0042623,GO:0042802,GO:0042803,GO:0042886,GO:0043162,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043328,GO:0043624,GO:0043632,GO:0043900,GO:0043901,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044126,GO:0044130,GO:0044144,GO:0044146,GO:0044182,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044837,GO:0044878,GO:0045053,GO:0045184,GO:0045185,GO:0045197,GO:0045324,GO:0045463,GO:0045465,GO:0045470,GO:0045742,GO:0045746,GO:0045786,GO:0045787,GO:0045920,GO:0045921,GO:0045926,GO:0045930,GO:0045931,GO:0046530,GO:0046599,GO:0046601,GO:0046605,GO:0046607,GO:0046755,GO:0046903,GO:0046907,GO:0046983,GO:0048284,GO:0048285,GO:0048468,GO:0048469,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0048583,GO:0048584,GO:0048585,GO:0048592,GO:0048666,GO:0048699,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050000,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051020,GO:0051046,GO:0051047,GO:0051048,GO:0051049,GO:0051050,GO:0051051,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051235,GO:0051259,GO:0051260,GO:0051261,GO:0051276,GO:0051301,GO:0051302,GO:0051303,GO:0051310,GO:0051493,GO:0051495,GO:0051603,GO:0051640,GO:0051641,GO:0051649,GO:0051651,GO:0051656,GO:0051701,GO:0051704,GO:0051716,GO:0051726,GO:0051782,GO:0051783,GO:0052126,GO:0052192,GO:0060236,GO:0060341,GO:0060548,GO:0060627,GO:0061024,GO:0061025,GO:0061245,GO:0061462,GO:0061640,GO:0061738,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0070507,GO:0070676,GO:0070727,GO:0070887,GO:0070925,GO:0071241,GO:0071248,GO:0071285,GO:0071695,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072319,GO:0072594,GO:0072657,GO:0072665,GO:0072666,GO:0090068,GO:0090169,GO:0090174,GO:0090224,GO:0090543,GO:0090596,GO:0090611,GO:0097159,GO:0097352,GO:0097367,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098813,GO:0140014,GO:1901184,GO:1901186,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901615,GO:1901673,GO:1901987,GO:1901988,GO:1901989,GO:1901990,GO:1901991,GO:1901992,GO:1902115,GO:1902117,GO:1902186,GO:1902188,GO:1902494,GO:1902749,GO:1902750,GO:1902751,GO:1903047,GO:1903076,GO:1903530,GO:1903531,GO:1903532,GO:1903539,GO:1903541,GO:1903542,GO:1903543,GO:1903722,GO:1903724,GO:1903772,GO:1903774,GO:1903827,GO:1903900,GO:1903902,GO:1904375,GO:1904896,GO:1904903,GO:1904949,GO:1905475,GO:1990621,GO:1990778
Evalue7.67e-169
EggNOG OGsKOG0739@1|root,KOG0739@2759|Eukaryota
Descriptionpositive regulation of centriole elongation
COG categoryO
BRITEko00000,ko00001,ko00002,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6885Ggra6885Gracilaria gracilis GNS1m malegenetig00000056_pilon 838566..839921 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6885.t1.start1Ggra6885.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 838566..838568 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6885.t1.CDS1Ggra6885.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 838566..839921 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6885.t1.exon1Ggra6885.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 838566..839921 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6885.t1.stop1Ggra6885.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 839919..839921 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6885.t1Ggra6885.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 838566..839921 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6885.t1 ID=Ggra6885.t1|Name=Ggra6885.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=452bp
MTDTSTFINQGVIHAEKAIQYDKLACKDSNPEHFENAKNSYVRAIEHYYV
ALKYEKNERTQLTLREKIETYMSRAETMKEWLTKYEARQKEASDNPASEH
GASDGGGTAAPSKKKGEKDDDTGEKRLRDRLGSAVLTEKPNVKWDDVAGL
EGAKEALREAVILPQMFPQMFTGKRRPWKGILLYGPPGTGKSYLAKAVAT
EADAKFFSVSSSDLVSKWQGESEKLIKNLFSMAREAGKAIIFIDEVDALV
SSRNDNESESSRRIKTEFLVQMDGVGNSTDGVLLLAATNIPWALDEALLR
RMERRIYIPLPDARARAKMFQLHLGNTPHVLQQADYMDLAEESDGYSGSD
IAVLCRDALMQPVRTLQNASFFKKVTVTEKGHSETKYTPCSPGDPDKIEM
NLMKVKAEELLVPAVRRYDFEKALSSTKPSVGKDNLAKHTKFTHEKGQSG
V*
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spliced messenger RNA

>Ggra6885.t1 ID=Ggra6885.t1|Name=Ggra6885.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1356bp|location=Sequence derived from alignment at tig00000056_pilon:838566..839921+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGATACCAGCACCTTCATCAATCAGGGCGTCATTCACGCCGAGAA
GGCCATTCAATATGATAAGCTTGCGTGTAAGGATTCCAACCCGGAGCACT
TTGAGAACGCCAAGAACAGCTATGTGCGCGCCATTGAGCACTACTACGTC
GCGCTCAAGTACGAGAAGAATGAACGTACACAGCTCACGCTCCGGGAGAA
AATAGAGACCTACATGAGCCGCGCTGAGACCATGAAGGAGTGGCTCACAA
AGTACGAGGCCAGACAGAAGGAGGCTTCCGACAACCCCGCTTCTGAGCAC
GGCGCGTCCGACGGCGGTGGCACCGCTGCCCCTTCCAAGAAGAAGGGCGA
GAAAGATGATGACACTGGTGAGAAGCGCTTGAGAGATCGTCTTGGATCCG
CTGTGCTCACGGAGAAGCCCAATGTTAAGTGGGACGACGTTGCAGGTCTG
GAAGGCGCAAAGGAAGCGTTGAGGGAGGCTGTTATTCTACCGCAGATGTT
CCCGCAGATGTTCACTGGAAAGCGACGCCCGTGGAAGGGAATCTTGCTCT
ATGGACCGCCGGGAACCGGAAAGAGTTATCTTGCGAAAGCGGTCGCCACA
GAGGCAGACGCCAAGTTCTTCTCGGTGTCGTCCAGTGACCTGGTGTCAAA
GTGGCAGGGAGAGAGCGAGAAGCTCATCAAGAATCTGTTCTCCATGGCGC
GTGAGGCGGGAAAAGCCATTATTTTCATCGATGAGGTTGATGCGTTGGTG
TCGTCCAGAAACGATAATGAGTCTGAAAGCTCACGCAGAATAAAGACCGA
GTTCCTTGTGCAAATGGATGGTGTTGGAAATTCCACAGATGGCGTTCTGT
TGCTGGCTGCTACTAACATTCCATGGGCTTTGGATGAAGCTTTGTTGCGA
CGAATGGAACGTCGAATCTATATCCCGCTTCCTGACGCGAGGGCTCGAGC
AAAGATGTTCCAATTGCACCTGGGCAATACTCCACACGTTCTTCAACAAG
CTGATTACATGGACTTGGCGGAAGAGAGTGACGGCTATTCTGGATCGGAT
ATTGCCGTGTTGTGTCGTGACGCGCTCATGCAACCGGTGCGTACGTTGCA
GAATGCGAGTTTCTTTAAGAAGGTGACGGTGACTGAAAAGGGCCACAGCG
AGACAAAGTATACACCTTGTTCACCAGGTGATCCTGACAAGATTGAGATG
AACTTGATGAAGGTGAAGGCGGAGGAGCTCTTGGTTCCTGCTGTAAGACG
ATACGATTTTGAAAAGGCTCTTTCTAGTACCAAGCCTTCTGTCGGAAAGG
ATAACCTCGCAAAGCATACAAAGTTCACGCATGAAAAGGGTCAAAGTGGC
GTTTGA
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protein sequence of Ggra6885.t1

>Ggra6885.t1 ID=Ggra6885.t1|Name=Ggra6885.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=452bp
MTDTSTFINQGVIHAEKAIQYDKLACKDSNPEHFENAKNSYVRAIEHYYV
ALKYEKNERTQLTLREKIETYMSRAETMKEWLTKYEARQKEASDNPASEH
GASDGGGTAAPSKKKGEKDDDTGEKRLRDRLGSAVLTEKPNVKWDDVAGL
EGAKEALREAVILPQMFPQMFTGKRRPWKGILLYGPPGTGKSYLAKAVAT
EADAKFFSVSSSDLVSKWQGESEKLIKNLFSMAREAGKAIIFIDEVDALV
SSRNDNESESSRRIKTEFLVQMDGVGNSTDGVLLLAATNIPWALDEALLR
RMERRIYIPLPDARARAKMFQLHLGNTPHVLQQADYMDLAEESDGYSGSD
IAVLCRDALMQPVRTLQNASFFKKVTVTEKGHSETKYTPCSPGDPDKIEM
NLMKVKAEELLVPAVRRYDFEKALSSTKPSVGKDNLAKHTKFTHEKGQSG
V*
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mRNA from alignment at tig00000056_pilon:838566..839921+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6885.t1 ID=Ggra6885.t1|Name=Ggra6885.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1356bp|location=Sequence derived from alignment at tig00000056_pilon:838566..839921+ (Gracilaria gracilis GNS1m male)
ATGACTGATACCAGCACCTTCATCAATCAGGGCGTCATTCACGCCGAGAA
GGCCATTCAATATGATAAGCTTGCGTGTAAGGATTCCAACCCGGAGCACT
TTGAGAACGCCAAGAACAGCTATGTGCGCGCCATTGAGCACTACTACGTC
GCGCTCAAGTACGAGAAGAATGAACGTACACAGCTCACGCTCCGGGAGAA
AATAGAGACCTACATGAGCCGCGCTGAGACCATGAAGGAGTGGCTCACAA
AGTACGAGGCCAGACAGAAGGAGGCTTCCGACAACCCCGCTTCTGAGCAC
GGCGCGTCCGACGGCGGTGGCACCGCTGCCCCTTCCAAGAAGAAGGGCGA
GAAAGATGATGACACTGGTGAGAAGCGCTTGAGAGATCGTCTTGGATCCG
CTGTGCTCACGGAGAAGCCCAATGTTAAGTGGGACGACGTTGCAGGTCTG
GAAGGCGCAAAGGAAGCGTTGAGGGAGGCTGTTATTCTACCGCAGATGTT
CCCGCAGATGTTCACTGGAAAGCGACGCCCGTGGAAGGGAATCTTGCTCT
ATGGACCGCCGGGAACCGGAAAGAGTTATCTTGCGAAAGCGGTCGCCACA
GAGGCAGACGCCAAGTTCTTCTCGGTGTCGTCCAGTGACCTGGTGTCAAA
GTGGCAGGGAGAGAGCGAGAAGCTCATCAAGAATCTGTTCTCCATGGCGC
GTGAGGCGGGAAAAGCCATTATTTTCATCGATGAGGTTGATGCGTTGGTG
TCGTCCAGAAACGATAATGAGTCTGAAAGCTCACGCAGAATAAAGACCGA
GTTCCTTGTGCAAATGGATGGTGTTGGAAATTCCACAGATGGCGTTCTGT
TGCTGGCTGCTACTAACATTCCATGGGCTTTGGATGAAGCTTTGTTGCGA
CGAATGGAACGTCGAATCTATATCCCGCTTCCTGACGCGAGGGCTCGAGC
AAAGATGTTCCAATTGCACCTGGGCAATACTCCACACGTTCTTCAACAAG
CTGATTACATGGACTTGGCGGAAGAGAGTGACGGCTATTCTGGATCGGAT
ATTGCCGTGTTGTGTCGTGACGCGCTCATGCAACCGGTGCGTACGTTGCA
GAATGCGAGTTTCTTTAAGAAGGTGACGGTGACTGAAAAGGGCCACAGCG
AGACAAAGTATACACCTTGTTCACCAGGTGATCCTGACAAGATTGAGATG
AACTTGATGAAGGTGAAGGCGGAGGAGCTCTTGGTTCCTGCTGTAAGACG
ATACGATTTTGAAAAGGCTCTTTCTAGTACCAAGCCTTCTGTCGGAAAGG
ATAACCTCGCAAAGCATACAAAGTTCACGCATGAAAAGGGTCAAAGTGGC
GTTTGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:838566..839921+

>Ggra6885.t1 ID=Ggra6885.t1|Name=Ggra6885.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1356bp|location=Sequence derived from alignment at tig00000056_pilon:838566..839921+ (Gracilaria gracilis GNS1m male)
ATGACTGATACCAGCACCTTCATCAATCAGGGCGTCATTCACGCCGAGAA
GGCCATTCAATATGATAAGCTTGCGTGTAAGGATTCCAACCCGGAGCACT
TTGAGAACGCCAAGAACAGCTATGTGCGCGCCATTGAGCACTACTACGTC
GCGCTCAAGTACGAGAAGAATGAACGTACACAGCTCACGCTCCGGGAGAA
AATAGAGACCTACATGAGCCGCGCTGAGACCATGAAGGAGTGGCTCACAA
AGTACGAGGCCAGACAGAAGGAGGCTTCCGACAACCCCGCTTCTGAGCAC
GGCGCGTCCGACGGCGGTGGCACCGCTGCCCCTTCCAAGAAGAAGGGCGA
GAAAGATGATGACACTGGTGAGAAGCGCTTGAGAGATCGTCTTGGATCCG
CTGTGCTCACGGAGAAGCCCAATGTTAAGTGGGACGACGTTGCAGGTCTG
GAAGGCGCAAAGGAAGCGTTGAGGGAGGCTGTTATTCTACCGCAGATGTT
CCCGCAGATGTTCACTGGAAAGCGACGCCCGTGGAAGGGAATCTTGCTCT
ATGGACCGCCGGGAACCGGAAAGAGTTATCTTGCGAAAGCGGTCGCCACA
GAGGCAGACGCCAAGTTCTTCTCGGTGTCGTCCAGTGACCTGGTGTCAAA
GTGGCAGGGAGAGAGCGAGAAGCTCATCAAGAATCTGTTCTCCATGGCGC
GTGAGGCGGGAAAAGCCATTATTTTCATCGATGAGGTTGATGCGTTGGTG
TCGTCCAGAAACGATAATGAGTCTGAAAGCTCACGCAGAATAAAGACCGA
GTTCCTTGTGCAAATGGATGGTGTTGGAAATTCCACAGATGGCGTTCTGT
TGCTGGCTGCTACTAACATTCCATGGGCTTTGGATGAAGCTTTGTTGCGA
CGAATGGAACGTCGAATCTATATCCCGCTTCCTGACGCGAGGGCTCGAGC
AAAGATGTTCCAATTGCACCTGGGCAATACTCCACACGTTCTTCAACAAG
CTGATTACATGGACTTGGCGGAAGAGAGTGACGGCTATTCTGGATCGGAT
ATTGCCGTGTTGTGTCGTGACGCGCTCATGCAACCGGTGCGTACGTTGCA
GAATGCGAGTTTCTTTAAGAAGGTGACGGTGACTGAAAAGGGCCACAGCG
AGACAAAGTATACACCTTGTTCACCAGGTGATCCTGACAAGATTGAGATG
AACTTGATGAAGGTGAAGGCGGAGGAGCTCTTGGTTCCTGCTGTAAGACG
ATACGATTTTGAAAAGGCTCTTTCTAGTACCAAGCCTTCTGTCGGAAAGG
ATAACCTCGCAAAGCATACAAAGTTCACGCATGAAAAGGGTCAAAGTGGC
GTTTGA
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