Ggra6884.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6884.t1
Unique NameGgra6884.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length355
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:836861..837925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6412.HelroP86834
Preferred nameDUSP10
PFAMsDSPc,Rhodanese
Max annot lvl33208|Metazoa
KEGG koko:K20216
KEGG Pathwayko04010,ko04013,ko04214,map04010,map04013,map04214
GOsGO:0000188,GO:0001932,GO:0001933,GO:0002237,GO:0002682,GO:0002683,GO:0002684,GO:0002694,GO:0002696,GO:0002697,GO:0002698,GO:0002819,GO:0003674,GO:0003824,GO:0004721,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005794,GO:0005829,GO:0006464,GO:0006469,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007399,GO:0007417,GO:0008150,GO:0008152,GO:0008285,GO:0008330,GO:0008432,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010001,GO:0010033,GO:0010563,GO:0010605,GO:0010632,GO:0010633,GO:0010646,GO:0010648,GO:0010721,GO:0012505,GO:0014013,GO:0014014,GO:0016311,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016791,GO:0019220,GO:0019222,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0022008,GO:0022407,GO:0022409,GO:0023051,GO:0023057,GO:0030154,GO:0030155,GO:0030334,GO:0030336,GO:0031323,GO:0031324,GO:0031347,GO:0031348,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032101,GO:0032102,GO:0032268,GO:0032269,GO:0032496,GO:0032501,GO:0032502,GO:0032872,GO:0032873,GO:0032879,GO:0033549,GO:0033673,GO:0033993,GO:0035335,GO:0035970,GO:0036211,GO:0040008,GO:0040012,GO:0040013,GO:0042063,GO:0042127,GO:0042221,GO:0042325,GO:0042326,GO:0042578,GO:0043086,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043405,GO:0043407,GO:0043408,GO:0043409,GO:0043412,GO:0043506,GO:0043508,GO:0043549,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044387,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045088,GO:0045580,GO:0045582,GO:0045589,GO:0045591,GO:0045595,GO:0045596,GO:0045597,GO:0045598,GO:0045619,GO:0045621,GO:0045685,GO:0045686,GO:0045785,GO:0045824,GO:0045859,GO:0045926,GO:0045936,GO:0046328,GO:0046329,GO:0048273,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048638,GO:0048640,GO:0048699,GO:0048709,GO:0048713,GO:0048715,GO:0048731,GO:0048856,GO:0048869,GO:0050678,GO:0050680,GO:0050727,GO:0050728,GO:0050767,GO:0050768,GO:0050776,GO:0050777,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0050896,GO:0051019,GO:0051093,GO:0051094,GO:0051171,GO:0051172,GO:0051174,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051248,GO:0051249,GO:0051251,GO:0051270,GO:0051271,GO:0051338,GO:0051348,GO:0051704,GO:0051707,GO:0051960,GO:0051961,GO:0060255,GO:0060263,GO:0060264,GO:0060266,GO:0060268,GO:0060284,GO:0061041,GO:0061045,GO:0065007,GO:0065009,GO:0070013,GO:0070302,GO:0070303,GO:0070372,GO:0070373,GO:0071704,GO:0071900,GO:0071901,GO:0080090,GO:0080134,GO:0080135,GO:0090335,GO:0140096,GO:1900744,GO:1901564,GO:1901700,GO:1902105,GO:1902107,GO:1902531,GO:1902532,GO:1903034,GO:1903035,GO:1903037,GO:1903039,GO:1903706,GO:1903708,GO:1903753,GO:1905041,GO:1905042,GO:1990264,GO:2000026,GO:2000145,GO:2000146
Evalue1.52e-22
EggNOG OGsCOG2453@1|root,KOG1716@2759|Eukaryota,39T0V@33154|Opisthokonta,3B93R@33208|Metazoa,3D04V@33213|Bilateria
EC3.1.3.16,3.1.3.48
Descriptionnegative regulation of epithelium regeneration
COG categoryV
BRITEko00000,ko00001,ko01000,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6884Ggra6884Gracilaria gracilis GNS1m malegenetig00000056_pilon 836861..837925 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6884.t1.start1Ggra6884.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 836861..836863 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6884.t1.CDS1Ggra6884.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 836861..837925 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6884.t1.exon1Ggra6884.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 836861..837925 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6884.t1.stop1Ggra6884.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 837923..837925 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6884.t1Ggra6884.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 836861..837925 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6884.t1 ID=Ggra6884.t1|Name=Ggra6884.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=355bp
MKTQQRLDMCCTERRELTSGDSLRTAAISSQSLPELDLNLHDRQASGDFG
HCSRSLFRRSSQPASNLPLLNLSALREHVPTGEEICTPRRNVERIGRSLS
RVKPYLYVGSKLSVRDASTIEMNGISHMINLGGHLYHNQHSGVKYLSLSI
RDDVGENIEDFFDVCIAFINEARQRGGACAVVCTQGISRSGAIVVAYLMS
MENMSMDEALRRVRKSRPIIAPNSAFLNQLSALERRLTSGRRSAWMGKLT
YVGSVDKVLIGRNVSHTRVDSIEDEVFIIEKSDFEGVVVWKGRHAPEHMW
KEAVRVAHRMDARVRAECELRSLRLPNGGVQLCAGGDDAAAMERLLRATL
RLRA*
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spliced messenger RNA

>Ggra6884.t1 ID=Ggra6884.t1|Name=Ggra6884.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1065bp|location=Sequence derived from alignment at tig00000056_pilon:836861..837925+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGACTCAACAGCGACTAGACATGTGCTGCACCGAGCGTCGCGAGCT
GACGAGCGGCGACTCGCTGCGCACGGCAGCCATCTCGTCGCAGAGTCTAC
CGGAACTGGACCTCAACCTGCACGACCGGCAAGCAAGCGGTGACTTTGGG
CATTGCTCGCGGAGCCTGTTTCGCAGAAGCTCGCAGCCAGCGAGCAACCT
ACCGCTGCTGAATCTGTCAGCACTGAGAGAGCACGTACCGACGGGCGAGG
AGATATGCACGCCGCGTCGCAACGTGGAACGTATCGGACGCTCGTTATCG
CGCGTCAAACCGTACTTGTACGTCGGCAGCAAGCTGTCCGTGCGCGATGC
ATCGACGATAGAGATGAACGGCATCTCGCACATGATCAACTTGGGCGGAC
ATTTGTATCATAACCAACACAGCGGCGTCAAATACCTGTCGCTGAGCATT
CGAGACGACGTGGGCGAAAACATAGAGGACTTCTTCGACGTGTGTATTGC
ATTTATTAACGAAGCCAGACAGCGTGGTGGCGCGTGTGCCGTAGTGTGCA
CGCAGGGAATCTCAAGAAGTGGCGCCATCGTGGTGGCATACTTGATGAGC
ATGGAGAACATGAGTATGGACGAAGCGCTACGAAGGGTACGCAAGAGTCG
GCCGATCATCGCTCCCAACAGCGCGTTCCTCAACCAGCTAAGCGCGCTGG
AAAGGCGCCTAACGTCAGGGCGACGCAGCGCATGGATGGGCAAGCTGACG
TACGTCGGCAGCGTGGACAAGGTATTAATCGGCAGAAACGTGAGCCACAC
GCGCGTAGACAGTATAGAAGATGAGGTGTTCATCATAGAGAAAAGCGACT
TTGAAGGCGTCGTCGTCTGGAAGGGCCGCCACGCGCCCGAGCACATGTGG
AAGGAAGCGGTGCGCGTGGCGCATCGCATGGACGCTCGCGTGCGCGCGGA
GTGCGAGCTACGGTCGCTGCGTTTGCCCAACGGCGGCGTGCAGCTTTGCG
CGGGCGGCGATGACGCCGCCGCGATGGAACGGCTGCTGCGTGCGACGCTG
CGGCTACGCGCGTGA
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protein sequence of Ggra6884.t1

>Ggra6884.t1 ID=Ggra6884.t1|Name=Ggra6884.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=355bp
MKTQQRLDMCCTERRELTSGDSLRTAAISSQSLPELDLNLHDRQASGDFG
HCSRSLFRRSSQPASNLPLLNLSALREHVPTGEEICTPRRNVERIGRSLS
RVKPYLYVGSKLSVRDASTIEMNGISHMINLGGHLYHNQHSGVKYLSLSI
RDDVGENIEDFFDVCIAFINEARQRGGACAVVCTQGISRSGAIVVAYLMS
MENMSMDEALRRVRKSRPIIAPNSAFLNQLSALERRLTSGRRSAWMGKLT
YVGSVDKVLIGRNVSHTRVDSIEDEVFIIEKSDFEGVVVWKGRHAPEHMW
KEAVRVAHRMDARVRAECELRSLRLPNGGVQLCAGGDDAAAMERLLRATL
RLRA*
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mRNA from alignment at tig00000056_pilon:836861..837925+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6884.t1 ID=Ggra6884.t1|Name=Ggra6884.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1065bp|location=Sequence derived from alignment at tig00000056_pilon:836861..837925+ (Gracilaria gracilis GNS1m male)
ATGAAGACTCAACAGCGACTAGACATGTGCTGCACCGAGCGTCGCGAGCT
GACGAGCGGCGACTCGCTGCGCACGGCAGCCATCTCGTCGCAGAGTCTAC
CGGAACTGGACCTCAACCTGCACGACCGGCAAGCAAGCGGTGACTTTGGG
CATTGCTCGCGGAGCCTGTTTCGCAGAAGCTCGCAGCCAGCGAGCAACCT
ACCGCTGCTGAATCTGTCAGCACTGAGAGAGCACGTACCGACGGGCGAGG
AGATATGCACGCCGCGTCGCAACGTGGAACGTATCGGACGCTCGTTATCG
CGCGTCAAACCGTACTTGTACGTCGGCAGCAAGCTGTCCGTGCGCGATGC
ATCGACGATAGAGATGAACGGCATCTCGCACATGATCAACTTGGGCGGAC
ATTTGTATCATAACCAACACAGCGGCGTCAAATACCTGTCGCTGAGCATT
CGAGACGACGTGGGCGAAAACATAGAGGACTTCTTCGACGTGTGTATTGC
ATTTATTAACGAAGCCAGACAGCGTGGTGGCGCGTGTGCCGTAGTGTGCA
CGCAGGGAATCTCAAGAAGTGGCGCCATCGTGGTGGCATACTTGATGAGC
ATGGAGAACATGAGTATGGACGAAGCGCTACGAAGGGTACGCAAGAGTCG
GCCGATCATCGCTCCCAACAGCGCGTTCCTCAACCAGCTAAGCGCGCTGG
AAAGGCGCCTAACGTCAGGGCGACGCAGCGCATGGATGGGCAAGCTGACG
TACGTCGGCAGCGTGGACAAGGTATTAATCGGCAGAAACGTGAGCCACAC
GCGCGTAGACAGTATAGAAGATGAGGTGTTCATCATAGAGAAAAGCGACT
TTGAAGGCGTCGTCGTCTGGAAGGGCCGCCACGCGCCCGAGCACATGTGG
AAGGAAGCGGTGCGCGTGGCGCATCGCATGGACGCTCGCGTGCGCGCGGA
GTGCGAGCTACGGTCGCTGCGTTTGCCCAACGGCGGCGTGCAGCTTTGCG
CGGGCGGCGATGACGCCGCCGCGATGGAACGGCTGCTGCGTGCGACGCTG
CGGCTACGCGCGTGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:836861..837925+

>Ggra6884.t1 ID=Ggra6884.t1|Name=Ggra6884.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1065bp|location=Sequence derived from alignment at tig00000056_pilon:836861..837925+ (Gracilaria gracilis GNS1m male)
ATGAAGACTCAACAGCGACTAGACATGTGCTGCACCGAGCGTCGCGAGCT
GACGAGCGGCGACTCGCTGCGCACGGCAGCCATCTCGTCGCAGAGTCTAC
CGGAACTGGACCTCAACCTGCACGACCGGCAAGCAAGCGGTGACTTTGGG
CATTGCTCGCGGAGCCTGTTTCGCAGAAGCTCGCAGCCAGCGAGCAACCT
ACCGCTGCTGAATCTGTCAGCACTGAGAGAGCACGTACCGACGGGCGAGG
AGATATGCACGCCGCGTCGCAACGTGGAACGTATCGGACGCTCGTTATCG
CGCGTCAAACCGTACTTGTACGTCGGCAGCAAGCTGTCCGTGCGCGATGC
ATCGACGATAGAGATGAACGGCATCTCGCACATGATCAACTTGGGCGGAC
ATTTGTATCATAACCAACACAGCGGCGTCAAATACCTGTCGCTGAGCATT
CGAGACGACGTGGGCGAAAACATAGAGGACTTCTTCGACGTGTGTATTGC
ATTTATTAACGAAGCCAGACAGCGTGGTGGCGCGTGTGCCGTAGTGTGCA
CGCAGGGAATCTCAAGAAGTGGCGCCATCGTGGTGGCATACTTGATGAGC
ATGGAGAACATGAGTATGGACGAAGCGCTACGAAGGGTACGCAAGAGTCG
GCCGATCATCGCTCCCAACAGCGCGTTCCTCAACCAGCTAAGCGCGCTGG
AAAGGCGCCTAACGTCAGGGCGACGCAGCGCATGGATGGGCAAGCTGACG
TACGTCGGCAGCGTGGACAAGGTATTAATCGGCAGAAACGTGAGCCACAC
GCGCGTAGACAGTATAGAAGATGAGGTGTTCATCATAGAGAAAAGCGACT
TTGAAGGCGTCGTCGTCTGGAAGGGCCGCCACGCGCCCGAGCACATGTGG
AAGGAAGCGGTGCGCGTGGCGCATCGCATGGACGCTCGCGTGCGCGCGGA
GTGCGAGCTACGGTCGCTGCGTTTGCCCAACGGCGGCGTGCAGCTTTGCG
CGGGCGGCGATGACGCCGCCGCGATGGAACGGCTGCTGCGTGCGACGCTG
CGGCTACGCGCGTGA
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