Ggra6883.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6883.t1
Unique NameGgra6883.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length511
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:833465..836458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog78898.MVEG_04553T0
Max annot lvl4751|Fungi
Evalue2.17e-17
EggNOG OGs2E3H1@1|root,2SAJC@2759|Eukaryota,3ARBF@33154|Opisthokonta,3PFVF@4751|Fungi
DescriptionAllomyces macrogynus ATCC 38327
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6883Ggra6883Gracilaria gracilis GNS1m malegenetig00000056_pilon 833465..836458 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6883.t1Ggra6883.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 833465..836458 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6883.t1.start1Ggra6883.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 833465..833467 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6883.t1.CDS1Ggra6883.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 833465..833726 +
Ggra6883.t1.CDS2Ggra6883.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000056_pilon 833802..833855 +
Ggra6883.t1.CDS3Ggra6883.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000056_pilon 835149..835334 +
Ggra6883.t1.CDS4Ggra6883.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000056_pilon 835428..836458 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6883.t1.exon1Ggra6883.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 833465..833726 +
Ggra6883.t1.exon2Ggra6883.t1.exon2Gracilaria gracilis GNS1m maleexontig00000056_pilon 833802..833855 +
Ggra6883.t1.exon3Ggra6883.t1.exon3Gracilaria gracilis GNS1m maleexontig00000056_pilon 835149..835334 +
Ggra6883.t1.exon4Ggra6883.t1.exon4Gracilaria gracilis GNS1m maleexontig00000056_pilon 835428..836458 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6883.t1.intron1Ggra6883.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000056_pilon 833727..833801 +
Ggra6883.t1.intron2Ggra6883.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000056_pilon 833856..835148 +
Ggra6883.t1.intron3Ggra6883.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000056_pilon 835335..835427 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6883.t1.stop1Ggra6883.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 836456..836458 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6883.t1 ID=Ggra6883.t1|Name=Ggra6883.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=511bp
MTSDQVANHLLERMQQSGERDRIKEWLMNDLETTGWTSTLLEKITQLRSS
TDKSASENTSAADASSSSESDQLTVRRISTQLSKDALASVPDSVRSKLMQ
ELLDISDPLPTRELHCRVGAQQGRDCYGPCPAPDDYGRLNHPWINEHNPA
QTWRRGDMVNVRWHRDNHDGTGFVRLVLVPVDKMMDKRAHDQYAFHFLCM
NEGLHHCSDRSYDTCGNDGEGMAWQKLVQVPTSYPDGVYVFGWSWYGGGD
YRAMSFFGDYFSCSFIKIEGGVPVTDSYEPQWDGSKCVSSADRLGICWKE
PCHVGHMYEMEPFEFKDGKKPEPIQSWWFGDGNENSGDDNRHSFGSSVTL
GSGSSVSVGARSGGRGGRDNLASALDLNVGDSSSESPSSPEDENAFNPEF
ISTGALGVFFLDFTNWEKIPLKDGETYRLDNFKNGFTVEAFYNGNVRFID
FFVDGNKVRRERSKPYVMNGNRGKLIFGWSPPVGRIVKVQVKVTTKEGRT
ESYEADIEFE*
back to top

spliced messenger RNA

>Ggra6883.t1 ID=Ggra6883.t1|Name=Ggra6883.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1533bp|location=Sequence derived from alignment at tig00000056_pilon:833465..836458+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTCTGATCAAGTTGCGAACCACCTATTGGAGCGGATGCAACAGTC
TGGTGAGCGCGACCGAATCAAAGAGTGGTTGATGAATGACTTGGAAACGA
CTGGTTGGACATCTACTTTGCTTGAGAAGATTACACAATTGCGCTCCTCA
ACTGACAAGTCTGCTTCGGAGAACACTTCCGCGGCAGACGCTTCCTCCTC
GTCAGAGAGTGATCAACTTACTGTGAGACGTATATCGACTCAATTAAGTA
AAGATGCTTTAGCATCTGTGCCAGACTCTGTGCGTTCAAAGTTGATGCAG
GAGCTCTTGGATATCTCAGACCCGCTCCCTACGCGTGAATTGCATTGTCG
CGTCGGTGCGCAACAAGGGAGAGATTGCTATGGACCTTGTCCAGCACCAG
ACGACTATGGACGTCTAAACCATCCCTGGATTAATGAACACAACCCTGCT
CAAACATGGAGACGGGGCGATATGGTGAATGTGAGATGGCACAGGGACAA
CCATGATGGTACTGGTTTTGTGCGACTCGTCTTGGTACCAGTTGACAAAA
TGATGGACAAGAGGGCTCATGATCAATACGCGTTCCATTTTCTCTGCATG
AATGAAGGTCTTCACCACTGTTCCGATCGGTCATATGACACGTGCGGAAA
CGATGGTGAAGGTATGGCTTGGCAAAAGCTAGTACAAGTTCCAACCAGTT
ACCCCGACGGGGTGTACGTATTCGGCTGGTCATGGTACGGGGGCGGCGAT
TATCGAGCAATGAGTTTCTTTGGAGACTATTTCAGTTGCAGTTTTATCAA
AATCGAAGGCGGAGTACCGGTGACAGACAGCTATGAACCACAATGGGACG
GCAGCAAATGCGTGAGCTCCGCAGATCGGTTGGGAATATGCTGGAAGGAA
CCTTGTCACGTGGGTCATATGTATGAGATGGAACCTTTTGAATTCAAGGA
CGGCAAGAAGCCTGAGCCGATTCAAAGCTGGTGGTTTGGGGACGGAAATG
AGAACAGTGGCGATGACAACCGTCATTCTTTTGGCAGTTCGGTGACATTA
GGATCTGGATCGTCCGTGTCTGTTGGAGCCCGAAGTGGCGGTCGCGGTGG
TAGAGATAATTTAGCAAGCGCACTAGACCTGAACGTAGGCGATTCGTCAT
CGGAATCACCTTCATCACCAGAGGATGAAAACGCATTCAACCCGGAGTTC
ATTTCAACGGGCGCGTTGGGAGTGTTCTTCCTTGACTTCACAAATTGGGA
AAAGATCCCACTGAAGGACGGAGAGACATATCGTCTGGACAACTTCAAGA
ACGGGTTCACGGTGGAGGCGTTCTACAACGGGAACGTACGCTTCATCGAC
TTCTTCGTGGACGGCAACAAAGTACGCCGCGAACGGTCGAAGCCCTACGT
GATGAACGGCAACCGAGGAAAGCTCATCTTCGGGTGGAGCCCGCCCGTGG
GACGGATTGTCAAGGTGCAAGTGAAGGTGACGACCAAAGAAGGTCGCACT
GAGAGCTACGAGGCTGACATCGAGTTCGAGTAG
back to top

protein sequence of Ggra6883.t1

>Ggra6883.t1 ID=Ggra6883.t1|Name=Ggra6883.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=511bp
MTSDQVANHLLERMQQSGERDRIKEWLMNDLETTGWTSTLLEKITQLRSS
TDKSASENTSAADASSSSESDQLTVRRISTQLSKDALASVPDSVRSKLMQ
ELLDISDPLPTRELHCRVGAQQGRDCYGPCPAPDDYGRLNHPWINEHNPA
QTWRRGDMVNVRWHRDNHDGTGFVRLVLVPVDKMMDKRAHDQYAFHFLCM
NEGLHHCSDRSYDTCGNDGEGMAWQKLVQVPTSYPDGVYVFGWSWYGGGD
YRAMSFFGDYFSCSFIKIEGGVPVTDSYEPQWDGSKCVSSADRLGICWKE
PCHVGHMYEMEPFEFKDGKKPEPIQSWWFGDGNENSGDDNRHSFGSSVTL
GSGSSVSVGARSGGRGGRDNLASALDLNVGDSSSESPSSPEDENAFNPEF
ISTGALGVFFLDFTNWEKIPLKDGETYRLDNFKNGFTVEAFYNGNVRFID
FFVDGNKVRRERSKPYVMNGNRGKLIFGWSPPVGRIVKVQVKVTTKEGRT
ESYEADIEFE*
back to top

mRNA from alignment at tig00000056_pilon:833465..836458+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6883.t1 ID=Ggra6883.t1|Name=Ggra6883.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2994bp|location=Sequence derived from alignment at tig00000056_pilon:833465..836458+ (Gracilaria gracilis GNS1m male)
ATGACCTCTGATCAAGTTGCGAACCACCTATTGGAGCGGATGCAACAGTC
TGGTGAGCGCGACCGAATCAAAGAGTGGTTGATGAATGACTTGGAAACGA
CTGGTTGGACATCTACTTTGCTTGAGAAGATTACACAATTGCGCTCCTCA
ACTGACAAGTCTGCTTCGGAGAACACTTCCGCGGCAGACGCTTCCTCCTC
GTCAGAGAGTGATCAACTTACTGTGAGACGTATATCGACTCAATTAAGTA
AAGATGCTTTAGGTACGTCGTTTTCTCTACATCCATCTGCGCCACGTATT
CTTTTTTTGCTCATGCTTCTTTTCTGCACTCTTTCAGCATCTGTGCCAGA
CTCTGTGCGTTCAAAGTTGATGCAGGAGCTCTTGGATATCTGTAGACAAT
ATGTTACATCAGAACACTTTGCTACTTCTGTCCCCAAGGGAAACAAGTGA
TAATCCTTCTTCGCGCATGTGTCCCAGTGTTTTCATAGATAAATCTTCCT
ATATGTTTGTGTGTGTACAGTCACTTTGTTGTCTTCCAACCTCCCGTTTT
GTTGTAAACAACAGTTTCTGGCGCTCCTCTTGTAACAGCATTACCCTTCA
GCTGCAGTAAGCCTTTTTTTTGAACTCAAAAAGGCTTTCACTTCCTTTAT
TGCGCTTCATACCTCCCCCTTCCGATACCGTTTTCATTCATGCTCTAGTT
TCTACATCGTCGAAAAAAATGGACATGTACGCCGCCCTGTCAGCACTACT
AATCACCACCATAGAAACGCCACAGCCTTTTAGCATGTTCAAACGGGACA
GCCACAAACCAGGGGAATACATCAGCAAACTTAGGGGCACTCGTTTCAAC
CATAATGCAATTAGTCGCCATGTTCACACATCTTTTCAATAGGGTCAAAA
TGCAATCCTCATCTTTGTGGCTCATTCCTCCTTCTCGAACATACCATCAT
CACACATTAGACAGCAATGCTCACTGAACGTTCCTACCCACAAGTTCAGA
TCGGACCCTGATACCAAACCCCGATGACAAACTTCGAAATGGCAGTAAAG
TCCGACAACAGACCCGTTCACAAAAAGCACAGTCAGTACCCCTGGCCCGC
ATACCAATAACACCGATAAAGCTCGCAAAGTCCCGATTTCGCATTCATCG
GACGTACAGCGTACCTCGATGCCGCCACGTTTATTTTTGTCTGGCAACTG
CTTTGGTGCGATAACGATTCCATCGTTACACTGATGAGTAATTGAAGTGC
GTACTGGTCCAATACCATTGCCATTTAACTCGGGCCGATTTTCTAGACTC
GTGCTTACGTCGAGGATGGATGCTTGCGAGATTTGGTTCAGTTACGTCGA
GTCGCGTTTCAGAGACTGAATGGCCGAGCCCGGGAATTTGCGCTCTAAAC
TGAAGAGCGAACCTTTGATGCTCATCCTCGCTTCAACTCCCTCAAGACTC
AGCAGTGCGACAAAATTCGCTGCAGAGTCAAACCCCACTCCGCTTCCTAC
CAACGCGCTTTCAAAGGCTTTCTATATCTTTCTTCGAACTCATAGCACCT
GTTGCTGCAAAAACTGGCTATCATCCGTTTCTTCATGACACATATTAACA
GATTGAGATATTCGACGGCTGCTCTTTCATTCGTGGCTGCCTTCTTAATA
AGCGCTAAAGGCGTTTTCGGACATTCTCACTTAGCAGACCCGCTCCCTAC
GCGTGAATTGCATTGTCGCGTCGGTGCGCAACAAGGGAGAGATTGCTATG
GACCTTGTCCAGCACCAGACGACTATGGACGTCTAAACCATCCCTGGATT
AATGAACACAACCCTGCTCAAACATGGAGACGGGGCGATATGGTGAATGT
GAGATGGCACAGGGACAACCGTACGTATAATCATCAAACCACCAATACAA
AGAATATCAAGAAAGTGCTGACGTGCGTTATATCGTGCTTTCGTTACGAA
TGTTGATAAACAGATGATGGTACTGGTTTTGTGCGACTCGTCTTGGTACC
AGTTGACAAAATGATGGACAAGAGGGCTCATGATCAATACGCGTTCCATT
TTCTCTGCATGAATGAAGGTCTTCACCACTGTTCCGATCGGTCATATGAC
ACGTGCGGAAACGATGGTGAAGGTATGGCTTGGCAAAAGCTAGTACAAGT
TCCAACCAGTTACCCCGACGGGGTGTACGTATTCGGCTGGTCATGGTACG
GGGGCGGCGATTATCGAGCAATGAGTTTCTTTGGAGACTATTTCAGTTGC
AGTTTTATCAAAATCGAAGGCGGAGTACCGGTGACAGACAGCTATGAACC
ACAATGGGACGGCAGCAAATGCGTGAGCTCCGCAGATCGGTTGGGAATAT
GCTGGAAGGAACCTTGTCACGTGGGTCATATGTATGAGATGGAACCTTTT
GAATTCAAGGACGGCAAGAAGCCTGAGCCGATTCAAAGCTGGTGGTTTGG
GGACGGAAATGAGAACAGTGGCGATGACAACCGTCATTCTTTTGGCAGTT
CGGTGACATTAGGATCTGGATCGTCCGTGTCTGTTGGAGCCCGAAGTGGC
GGTCGCGGTGGTAGAGATAATTTAGCAAGCGCACTAGACCTGAACGTAGG
CGATTCGTCATCGGAATCACCTTCATCACCAGAGGATGAAAACGCATTCA
ACCCGGAGTTCATTTCAACGGGCGCGTTGGGAGTGTTCTTCCTTGACTTC
ACAAATTGGGAAAAGATCCCACTGAAGGACGGAGAGACATATCGTCTGGA
CAACTTCAAGAACGGGTTCACGGTGGAGGCGTTCTACAACGGGAACGTAC
GCTTCATCGACTTCTTCGTGGACGGCAACAAAGTACGCCGCGAACGGTCG
AAGCCCTACGTGATGAACGGCAACCGAGGAAAGCTCATCTTCGGGTGGAG
CCCGCCCGTGGGACGGATTGTCAAGGTGCAAGTGAAGGTGACGACCAAAG
AAGGTCGCACTGAGAGCTACGAGGCTGACATCGAGTTCGAGTAG
back to top

Coding sequence (CDS) from alignment at tig00000056_pilon:833465..836458+

>Ggra6883.t1 ID=Ggra6883.t1|Name=Ggra6883.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1533bp|location=Sequence derived from alignment at tig00000056_pilon:833465..836458+ (Gracilaria gracilis GNS1m male)
ATGACCTCTGATCAAGTTGCGAACCACCTATTGGAGCGGATGCAACAGTC
TGGTGAGCGCGACCGAATCAAAGAGTGGTTGATGAATGACTTGGAAACGA
CTGGTTGGACATCTACTTTGCTTGAGAAGATTACACAATTGCGCTCCTCA
ACTGACAAGTCTGCTTCGGAGAACACTTCCGCGGCAGACGCTTCCTCCTC
GTCAGAGAGTGATCAACTTACTGTGAGACGTATATCGACTCAATTAAGTA
AAGATGCTTTAGCATCTGTGCCAGACTCTGTGCGTTCAAAGTTGATGCAG
GAGCTCTTGGATATCTCAGACCCGCTCCCTACGCGTGAATTGCATTGTCG
CGTCGGTGCGCAACAAGGGAGAGATTGCTATGGACCTTGTCCAGCACCAG
ACGACTATGGACGTCTAAACCATCCCTGGATTAATGAACACAACCCTGCT
CAAACATGGAGACGGGGCGATATGGTGAATGTGAGATGGCACAGGGACAA
CCATGATGGTACTGGTTTTGTGCGACTCGTCTTGGTACCAGTTGACAAAA
TGATGGACAAGAGGGCTCATGATCAATACGCGTTCCATTTTCTCTGCATG
AATGAAGGTCTTCACCACTGTTCCGATCGGTCATATGACACGTGCGGAAA
CGATGGTGAAGGTATGGCTTGGCAAAAGCTAGTACAAGTTCCAACCAGTT
ACCCCGACGGGGTGTACGTATTCGGCTGGTCATGGTACGGGGGCGGCGAT
TATCGAGCAATGAGTTTCTTTGGAGACTATTTCAGTTGCAGTTTTATCAA
AATCGAAGGCGGAGTACCGGTGACAGACAGCTATGAACCACAATGGGACG
GCAGCAAATGCGTGAGCTCCGCAGATCGGTTGGGAATATGCTGGAAGGAA
CCTTGTCACGTGGGTCATATGTATGAGATGGAACCTTTTGAATTCAAGGA
CGGCAAGAAGCCTGAGCCGATTCAAAGCTGGTGGTTTGGGGACGGAAATG
AGAACAGTGGCGATGACAACCGTCATTCTTTTGGCAGTTCGGTGACATTA
GGATCTGGATCGTCCGTGTCTGTTGGAGCCCGAAGTGGCGGTCGCGGTGG
TAGAGATAATTTAGCAAGCGCACTAGACCTGAACGTAGGCGATTCGTCAT
CGGAATCACCTTCATCACCAGAGGATGAAAACGCATTCAACCCGGAGTTC
ATTTCAACGGGCGCGTTGGGAGTGTTCTTCCTTGACTTCACAAATTGGGA
AAAGATCCCACTGAAGGACGGAGAGACATATCGTCTGGACAACTTCAAGA
ACGGGTTCACGGTGGAGGCGTTCTACAACGGGAACGTACGCTTCATCGAC
TTCTTCGTGGACGGCAACAAAGTACGCCGCGAACGGTCGAAGCCCTACGT
GATGAACGGCAACCGAGGAAAGCTCATCTTCGGGTGGAGCCCGCCCGTGG
GACGGATTGTCAAGGTGCAAGTGAAGGTGACGACCAAAGAAGGTCGCACT
GAGAGCTACGAGGCTGACATCGAGTTCGAGTAG
back to top