Ggra6877.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6877.t1
Unique Name	Ggra6877.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	507

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:802560..804080 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6877	Ggra6877	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 802560..804080 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6877.t1.stop1	Ggra6877.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 802560..802562 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6877.t1.CDS1	Ggra6877.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 802560..804080 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6877.t1.exon1	Ggra6877.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 802560..804080 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6877.t1.start1	Ggra6877.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 804078..804080 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6877.t1	Ggra6877.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 802560..804080 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:802560..804080-
coding sequence from alignment at tig00000056_pilon:802560..804080-

mRNA sequence

>Ggra6877.t1 ID=Ggra6877.t1|Name=Ggra6877.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=507bp
MIDRLRTPLASGNPVRSTRLLDLPDDLLMRVLQSLTREDGKLKADALRDV
WNASTTCTRVHRLMEKVLDGLPTREVVMEEYVVQEVQTEMPEDVVQGTMF
ALRSISEEGRMQEMIRKVRLSAIAQHELQTMLQRLRGCSALEELCFVDAE
GGVTMPNEIARRVQILTILLPRAQTLTMLKEAGCAPKKLELFRVDDDAAV
ELCRGAWQQLSRDCEDVDITWSGDIVPTCVNLLHQGEPIEVDSWYLKISN
EQFQTKVFGTRQRGLSLFDSVAMRMEPDREEDEDLLISRFGWKPVHIRRW
ISCKMSNPRKVLRRRVDLVGEEGFLSVLVDSDKRNRSLLSNEGELLKTFV
REMVLGGKGLVKRLHVAMSPSVHSENFQLMAEIATRLVHEAASAGIREFI
VNSKMFMELAHKPLPASVTSVGVIGDFVSSTVSSTFLYRLPMSLAMLAAD
SRTVWMQYMPLRDQSDGWRRMWCLRRVESSIRQIEESSGLCAMGVRGVLE
RWMRET*

spliced messenger RNA

>Ggra6877.t1 ID=Ggra6877.t1|Name=Ggra6877.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1521bp|location=Sequence derived from alignment at tig00000056_pilon:802560..804080- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGATCGTCTCCGAACCCCTTTAGCGTCAGGCAATCCGGTACGCAG
CACACGGCTCCTAGATCTACCTGACGACCTGCTGATGCGCGTGCTACAAT
CGCTTACCCGTGAGGACGGTAAACTGAAAGCCGACGCTTTACGCGACGTA
TGGAATGCATCCACAACGTGCACGCGAGTACACAGACTCATGGAGAAGGT
GTTAGACGGTCTTCCCACGAGGGAGGTCGTGATGGAAGAGTATGTGGTGC
AAGAGGTACAAACTGAGATGCCTGAAGACGTCGTACAAGGCACAATGTTC
GCGCTGCGCTCCATAAGCGAGGAAGGAAGAATGCAGGAGATGATACGGAA
GGTGCGTCTGAGCGCAATAGCGCAACACGAACTGCAGACAATGTTGCAGC
GGCTACGAGGTTGTTCTGCTTTAGAGGAGCTGTGTTTCGTGGACGCAGAG
GGCGGCGTGACAATGCCGAATGAAATAGCACGCCGTGTGCAGATACTGAC
GATACTGTTACCGCGAGCTCAGACACTGACTATGTTGAAGGAAGCGGGAT
GTGCACCGAAGAAGCTGGAGCTCTTTCGCGTGGACGATGATGCAGCTGTG
GAGCTGTGCCGCGGAGCATGGCAGCAATTATCACGCGACTGCGAAGACGT
GGACATAACGTGGTCCGGTGACATAGTGCCTACGTGTGTAAATTTACTTC
ACCAGGGTGAGCCTATCGAAGTTGACAGTTGGTATCTGAAAATCTCCAAT
GAGCAGTTCCAGACAAAGGTGTTCGGTACTAGGCAGCGTGGTTTGTCATT
GTTTGACTCAGTTGCTATGCGAATGGAGCCAGATCGTGAAGAAGATGAGG
ATTTATTAATAAGTCGATTTGGCTGGAAGCCTGTTCATATCCGACGGTGG
ATTTCGTGCAAAATGTCGAACCCAAGAAAAGTACTGCGGCGGCGCGTGGA
TCTGGTAGGAGAAGAAGGCTTTCTATCGGTTCTGGTGGACAGCGACAAAA
GAAATAGAAGCCTGCTATCCAATGAAGGTGAGCTTTTGAAGACGTTCGTG
CGCGAAATGGTGCTCGGTGGCAAAGGACTGGTTAAAAGACTGCACGTAGC
CATGTCGCCCTCTGTGCACAGTGAAAATTTTCAACTCATGGCAGAGATCG
CAACACGCCTGGTGCATGAGGCTGCTTCTGCGGGAATTCGCGAGTTTATA
GTAAACTCCAAAATGTTCATGGAGCTGGCACACAAACCGCTGCCTGCATC
TGTCACTAGTGTGGGCGTGATTGGAGATTTTGTGTCGAGCACGGTATCGA
GCACGTTCTTGTACAGGCTGCCTATGTCACTGGCGATGCTGGCGGCGGAT
TCGCGGACGGTTTGGATGCAGTACATGCCTTTGCGTGATCAAAGTGACGG
TTGGCGGAGAATGTGGTGTCTGCGTCGCGTGGAATCGTCTATAAGACAAA
TTGAGGAGAGCTCTGGCCTGTGCGCAATGGGCGTGCGCGGAGTGCTGGAA
CGGTGGATGCGCGAGACGTGA

protein sequence of Ggra6877.t1

>Ggra6877.t1 ID=Ggra6877.t1|Name=Ggra6877.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=507bp
MIDRLRTPLASGNPVRSTRLLDLPDDLLMRVLQSLTREDGKLKADALRDV
WNASTTCTRVHRLMEKVLDGLPTREVVMEEYVVQEVQTEMPEDVVQGTMF
ALRSISEEGRMQEMIRKVRLSAIAQHELQTMLQRLRGCSALEELCFVDAE
GGVTMPNEIARRVQILTILLPRAQTLTMLKEAGCAPKKLELFRVDDDAAV
ELCRGAWQQLSRDCEDVDITWSGDIVPTCVNLLHQGEPIEVDSWYLKISN
EQFQTKVFGTRQRGLSLFDSVAMRMEPDREEDEDLLISRFGWKPVHIRRW
ISCKMSNPRKVLRRRVDLVGEEGFLSVLVDSDKRNRSLLSNEGELLKTFV
REMVLGGKGLVKRLHVAMSPSVHSENFQLMAEIATRLVHEAASAGIREFI
VNSKMFMELAHKPLPASVTSVGVIGDFVSSTVSSTFLYRLPMSLAMLAAD
SRTVWMQYMPLRDQSDGWRRMWCLRRVESSIRQIEESSGLCAMGVRGVLE
RWMRET*

mRNA from alignment at tig00000056_pilon:802560..804080-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6877.t1 ID=Ggra6877.t1|Name=Ggra6877.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1521bp|location=Sequence derived from alignment at tig00000056_pilon:802560..804080- (Gracilaria gracilis GNS1m male)
ATGATTGATCGTCTCCGAACCCCTTTAGCGTCAGGCAATCCGGTACGCAG
CACACGGCTCCTAGATCTACCTGACGACCTGCTGATGCGCGTGCTACAAT
CGCTTACCCGTGAGGACGGTAAACTGAAAGCCGACGCTTTACGCGACGTA
TGGAATGCATCCACAACGTGCACGCGAGTACACAGACTCATGGAGAAGGT
GTTAGACGGTCTTCCCACGAGGGAGGTCGTGATGGAAGAGTATGTGGTGC
AAGAGGTACAAACTGAGATGCCTGAAGACGTCGTACAAGGCACAATGTTC
GCGCTGCGCTCCATAAGCGAGGAAGGAAGAATGCAGGAGATGATACGGAA
GGTGCGTCTGAGCGCAATAGCGCAACACGAACTGCAGACAATGTTGCAGC
GGCTACGAGGTTGTTCTGCTTTAGAGGAGCTGTGTTTCGTGGACGCAGAG
GGCGGCGTGACAATGCCGAATGAAATAGCACGCCGTGTGCAGATACTGAC
GATACTGTTACCGCGAGCTCAGACACTGACTATGTTGAAGGAAGCGGGAT
GTGCACCGAAGAAGCTGGAGCTCTTTCGCGTGGACGATGATGCAGCTGTG
GAGCTGTGCCGCGGAGCATGGCAGCAATTATCACGCGACTGCGAAGACGT
GGACATAACGTGGTCCGGTGACATAGTGCCTACGTGTGTAAATTTACTTC
ACCAGGGTGAGCCTATCGAAGTTGACAGTTGGTATCTGAAAATCTCCAAT
GAGCAGTTCCAGACAAAGGTGTTCGGTACTAGGCAGCGTGGTTTGTCATT
GTTTGACTCAGTTGCTATGCGAATGGAGCCAGATCGTGAAGAAGATGAGG
ATTTATTAATAAGTCGATTTGGCTGGAAGCCTGTTCATATCCGACGGTGG
ATTTCGTGCAAAATGTCGAACCCAAGAAAAGTACTGCGGCGGCGCGTGGA
TCTGGTAGGAGAAGAAGGCTTTCTATCGGTTCTGGTGGACAGCGACAAAA
GAAATAGAAGCCTGCTATCCAATGAAGGTGAGCTTTTGAAGACGTTCGTG
CGCGAAATGGTGCTCGGTGGCAAAGGACTGGTTAAAAGACTGCACGTAGC
CATGTCGCCCTCTGTGCACAGTGAAAATTTTCAACTCATGGCAGAGATCG
CAACACGCCTGGTGCATGAGGCTGCTTCTGCGGGAATTCGCGAGTTTATA
GTAAACTCCAAAATGTTCATGGAGCTGGCACACAAACCGCTGCCTGCATC
TGTCACTAGTGTGGGCGTGATTGGAGATTTTGTGTCGAGCACGGTATCGA
GCACGTTCTTGTACAGGCTGCCTATGTCACTGGCGATGCTGGCGGCGGAT
TCGCGGACGGTTTGGATGCAGTACATGCCTTTGCGTGATCAAAGTGACGG
TTGGCGGAGAATGTGGTGTCTGCGTCGCGTGGAATCGTCTATAAGACAAA
TTGAGGAGAGCTCTGGCCTGTGCGCAATGGGCGTGCGCGGAGTGCTGGAA
CGGTGGATGCGCGAGACGTGA

Coding sequence (CDS) from alignment at tig00000056_pilon:802560..804080-

>Ggra6877.t1 ID=Ggra6877.t1|Name=Ggra6877.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1521bp|location=Sequence derived from alignment at tig00000056_pilon:802560..804080- (Gracilaria gracilis GNS1m male)
ATGATTGATCGTCTCCGAACCCCTTTAGCGTCAGGCAATCCGGTACGCAG
CACACGGCTCCTAGATCTACCTGACGACCTGCTGATGCGCGTGCTACAAT
CGCTTACCCGTGAGGACGGTAAACTGAAAGCCGACGCTTTACGCGACGTA
TGGAATGCATCCACAACGTGCACGCGAGTACACAGACTCATGGAGAAGGT
GTTAGACGGTCTTCCCACGAGGGAGGTCGTGATGGAAGAGTATGTGGTGC
AAGAGGTACAAACTGAGATGCCTGAAGACGTCGTACAAGGCACAATGTTC
GCGCTGCGCTCCATAAGCGAGGAAGGAAGAATGCAGGAGATGATACGGAA
GGTGCGTCTGAGCGCAATAGCGCAACACGAACTGCAGACAATGTTGCAGC
GGCTACGAGGTTGTTCTGCTTTAGAGGAGCTGTGTTTCGTGGACGCAGAG
GGCGGCGTGACAATGCCGAATGAAATAGCACGCCGTGTGCAGATACTGAC
GATACTGTTACCGCGAGCTCAGACACTGACTATGTTGAAGGAAGCGGGAT
GTGCACCGAAGAAGCTGGAGCTCTTTCGCGTGGACGATGATGCAGCTGTG
GAGCTGTGCCGCGGAGCATGGCAGCAATTATCACGCGACTGCGAAGACGT
GGACATAACGTGGTCCGGTGACATAGTGCCTACGTGTGTAAATTTACTTC
ACCAGGGTGAGCCTATCGAAGTTGACAGTTGGTATCTGAAAATCTCCAAT
GAGCAGTTCCAGACAAAGGTGTTCGGTACTAGGCAGCGTGGTTTGTCATT
GTTTGACTCAGTTGCTATGCGAATGGAGCCAGATCGTGAAGAAGATGAGG
ATTTATTAATAAGTCGATTTGGCTGGAAGCCTGTTCATATCCGACGGTGG
ATTTCGTGCAAAATGTCGAACCCAAGAAAAGTACTGCGGCGGCGCGTGGA
TCTGGTAGGAGAAGAAGGCTTTCTATCGGTTCTGGTGGACAGCGACAAAA
GAAATAGAAGCCTGCTATCCAATGAAGGTGAGCTTTTGAAGACGTTCGTG
CGCGAAATGGTGCTCGGTGGCAAAGGACTGGTTAAAAGACTGCACGTAGC
CATGTCGCCCTCTGTGCACAGTGAAAATTTTCAACTCATGGCAGAGATCG
CAACACGCCTGGTGCATGAGGCTGCTTCTGCGGGAATTCGCGAGTTTATA
GTAAACTCCAAAATGTTCATGGAGCTGGCACACAAACCGCTGCCTGCATC
TGTCACTAGTGTGGGCGTGATTGGAGATTTTGTGTCGAGCACGGTATCGA
GCACGTTCTTGTACAGGCTGCCTATGTCACTGGCGATGCTGGCGGCGGAT
TCGCGGACGGTTTGGATGCAGTACATGCCTTTGCGTGATCAAAGTGACGG
TTGGCGGAGAATGTGGTGTCTGCGTCGCGTGGAATCGTCTATAAGACAAA
TTGAGGAGAGCTCTGGCCTGTGCGCAATGGGCGTGCGCGGAGTGCTGGAA
CGGTGGATGCGCGAGACGTGA