Ggra6875.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6875.t1
Unique NameGgra6875.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length104
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:801172..801483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD12826
Max annot lvl2903.EOD12826|-
Evalue0.00042
EggNOG OGs2F143@1|root,2T264@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6875Ggra6875Gracilaria gracilis GNS1m malegenetig00000056_pilon 801172..801483 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6875.t1.start1Ggra6875.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 801172..801174 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6875.t1.CDS1Ggra6875.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 801172..801483 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6875.t1.exon1Ggra6875.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 801172..801483 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6875.t1.stop1Ggra6875.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 801481..801483 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6875.t1Ggra6875.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 801172..801483 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6875.t1 ID=Ggra6875.t1|Name=Ggra6875.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=104bp
MSQSLNPPSQLSEKPRNACLPKLDGMHFSAMLQSARLAANSISQSYPQIT
ASNIHHAYGSQDGQLKLLHLSACMYSYWHAAPSGPSVFEITGQQLTCYLR
QPF*
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spliced messenger RNA

>Ggra6875.t1 ID=Ggra6875.t1|Name=Ggra6875.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=312bp|location=Sequence derived from alignment at tig00000056_pilon:801172..801483+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCAATCGTTAAACCCGCCGTCGCAGCTGTCCGAAAAGCCGCGCAA
CGCCTGTCTCCCCAAGCTGGACGGCATGCATTTCTCCGCCATGTTGCAGA
GTGCACGACTGGCCGCCAACTCCATATCGCAGTCGTACCCACAAATAACC
GCGTCGAACATCCACCACGCATACGGCAGCCAGGACGGCCAGCTCAAGTT
GCTACATCTGTCCGCGTGCATGTACAGCTACTGGCACGCCGCGCCGTCCG
GTCCATCTGTGTTCGAGATTACCGGGCAGCAGTTGACGTGCTACCTGCGC
CAGCCGTTTTGA
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protein sequence of Ggra6875.t1

>Ggra6875.t1 ID=Ggra6875.t1|Name=Ggra6875.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=104bp
MSQSLNPPSQLSEKPRNACLPKLDGMHFSAMLQSARLAANSISQSYPQIT
ASNIHHAYGSQDGQLKLLHLSACMYSYWHAAPSGPSVFEITGQQLTCYLR
QPF*
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mRNA from alignment at tig00000056_pilon:801172..801483+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6875.t1 ID=Ggra6875.t1|Name=Ggra6875.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=312bp|location=Sequence derived from alignment at tig00000056_pilon:801172..801483+ (Gracilaria gracilis GNS1m male)
ATGTCGCAATCGTTAAACCCGCCGTCGCAGCTGTCCGAAAAGCCGCGCAA
CGCCTGTCTCCCCAAGCTGGACGGCATGCATTTCTCCGCCATGTTGCAGA
GTGCACGACTGGCCGCCAACTCCATATCGCAGTCGTACCCACAAATAACC
GCGTCGAACATCCACCACGCATACGGCAGCCAGGACGGCCAGCTCAAGTT
GCTACATCTGTCCGCGTGCATGTACAGCTACTGGCACGCCGCGCCGTCCG
GTCCATCTGTGTTCGAGATTACCGGGCAGCAGTTGACGTGCTACCTGCGC
CAGCCGTTTTGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:801172..801483+

>Ggra6875.t1 ID=Ggra6875.t1|Name=Ggra6875.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=312bp|location=Sequence derived from alignment at tig00000056_pilon:801172..801483+ (Gracilaria gracilis GNS1m male)
ATGTCGCAATCGTTAAACCCGCCGTCGCAGCTGTCCGAAAAGCCGCGCAA
CGCCTGTCTCCCCAAGCTGGACGGCATGCATTTCTCCGCCATGTTGCAGA
GTGCACGACTGGCCGCCAACTCCATATCGCAGTCGTACCCACAAATAACC
GCGTCGAACATCCACCACGCATACGGCAGCCAGGACGGCCAGCTCAAGTT
GCTACATCTGTCCGCGTGCATGTACAGCTACTGGCACGCCGCGCCGTCCG
GTCCATCTGTGTTCGAGATTACCGGGCAGCAGTTGACGTGCTACCTGCGC
CAGCCGTTTTGA
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