Ggra6867.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6867.t1
Unique NameGgra6867.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length468
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:715844..717247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703218.1
Preferred nameGDE1
PFAMsAnk_2,Ank_4,GDPD,SPX
Max annot lvl2759|Eukaryota
KEGG rclassRC00017,RC00425
KEGG koko:K06653,ko:K18696
KEGG ReactionR01030,R01470
KEGG Pathwayko00564,ko04111,map00564,map04111
GOsGO:0001932,GO:0001933,GO:0003674,GO:0003824,GO:0004857,GO:0004860,GO:0004861,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005794,GO:0005829,GO:0005886,GO:0006469,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0006873,GO:0008081,GO:0008150,GO:0008152,GO:0008889,GO:0009056,GO:0009395,GO:0009892,GO:0009987,GO:0010563,GO:0010605,GO:0012505,GO:0016020,GO:0016042,GO:0016538,GO:0016787,GO:0016788,GO:0019207,GO:0019210,GO:0019220,GO:0019222,GO:0019637,GO:0019725,GO:0019887,GO:0030002,GO:0030234,GO:0030291,GO:0030320,GO:0030643,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0032268,GO:0032269,GO:0033673,GO:0035690,GO:0042221,GO:0042325,GO:0042326,GO:0042493,GO:0042578,GO:0042592,GO:0043086,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043549,GO:0044092,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0045859,GO:0045936,GO:0046434,GO:0046475,GO:0046486,GO:0046503,GO:0047389,GO:0048519,GO:0048523,GO:0048878,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0051716,GO:0055062,GO:0055081,GO:0055082,GO:0055083,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071704,GO:0071900,GO:0071901,GO:0071944,GO:0072501,GO:0072502,GO:0072505,GO:0072506,GO:0080090,GO:0098771,GO:0098772,GO:1901575
Evalue8.95e-32
EggNOG OGsCOG0584@1|root,KOG2421@2759|Eukaryota
EC3.1.4.46
Descriptionglycerophosphocholine phosphodiesterase activity
COG categoryC
BiGG ReactioniMM904.YPL110C
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6867Ggra6867Gracilaria gracilis GNS1m malegenetig00000056_pilon 715844..717247 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6867.t1.stop1Ggra6867.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 715844..715846 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6867.t1.CDS1Ggra6867.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 715844..717247 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6867.t1.exon1Ggra6867.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 715844..717247 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6867.t1.start1Ggra6867.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 717245..717247 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6867.t1Ggra6867.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 715844..717247 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6867.t1 ID=Ggra6867.t1|Name=Ggra6867.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=468bp
MTASMWPSTSAGPHYPPTPLCHPLLRIIPGSPRQAKPVVQWIVHPSSSSQ
PQLRASSRSESSLIDIPDSAFSEHWFDFSFHISDVTDYIAFNITAGTHRC
AATFLPQEFSNGEGVLSRAMVDDRNVPLAVLNFEFRYITPYTVPQPAVTK
KPFVPMFTGHRGMGSSGPHVPWRPLENSLESFLMATLRNNDVRTVELDVQ
LTRDNKVVLYHDWFVRPLDRSGNLIYDRESVKIPVNNLTFAQFNTLYQQS
YATNGPLSQQQLEIRRNVQQVHSIPDSCFEVRLRTLSEVCRLLPRDIGIL
LEIKYPAPNVQDDLVIPYPEKNHYVDLVLNELMSSGAAHPESERKVAFLS
FHADICAMLTMKQSQFPVYFSHCEVLDKPCEEFDPRSVYLQEGHRFVKSQ
NLDGLMLLNRLVELRPELIDQIVDDGIPILTYGKSNTDANVVKTQFGKGV
KGVIADDVNILIKEMRT*
back to top

spliced messenger RNA

>Ggra6867.t1 ID=Ggra6867.t1|Name=Ggra6867.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1404bp|location=Sequence derived from alignment at tig00000056_pilon:715844..717247- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCCTCCATGTGGCCGTCCACTTCGGCAGGCCCTCATTACCCGCC
CACGCCCCTCTGTCATCCTCTGCTGCGCATTATTCCGGGCAGTCCTCGTC
AAGCCAAGCCCGTCGTGCAATGGATCGTGCACCCATCCTCTTCCTCCCAA
CCTCAGCTTCGCGCCTCCTCTCGTTCGGAATCGTCGCTCATTGATATCCC
CGACTCAGCGTTCAGCGAGCATTGGTTCGACTTTTCGTTCCATATCTCCG
ATGTCACCGACTACATTGCGTTCAACATCACCGCTGGCACGCATCGCTGC
GCCGCCACTTTCTTGCCGCAGGAGTTCTCCAACGGCGAGGGTGTCTTGTC
TCGTGCCATGGTGGATGATCGTAATGTTCCGCTCGCTGTACTCAATTTCG
AATTCCGTTACATCACCCCGTACACAGTGCCGCAGCCGGCAGTCACCAAG
AAGCCGTTTGTGCCCATGTTTACTGGCCATCGGGGTATGGGGTCTTCCGG
ACCCCATGTTCCGTGGCGCCCGCTGGAGAATTCTTTGGAATCCTTCTTGA
TGGCTACTCTTCGCAACAATGATGTGCGTACAGTCGAACTTGACGTGCAA
CTCACGCGGGATAACAAAGTCGTTCTGTATCATGACTGGTTCGTTCGCCC
GCTTGATCGCTCAGGTAACCTCATTTATGACCGAGAAAGTGTCAAGATTC
CTGTCAACAATCTTACATTTGCTCAGTTTAACACATTGTATCAACAGTCT
TATGCTACTAATGGCCCGCTTTCGCAGCAACAACTAGAAATCCGCCGCAA
TGTACAACAAGTGCACTCCATCCCGGACTCGTGTTTTGAAGTTCGATTGC
GCACCCTGTCTGAGGTGTGCCGCTTGTTACCAAGGGACATTGGAATTTTG
CTGGAGATCAAGTACCCCGCTCCCAACGTTCAGGACGACCTAGTCATTCC
ATATCCTGAGAAGAATCACTATGTTGACCTTGTGTTGAATGAACTTATGT
CATCCGGTGCAGCCCATCCCGAATCGGAAAGAAAAGTCGCTTTTCTCTCG
TTTCATGCTGATATATGCGCAATGCTGACCATGAAGCAGAGTCAGTTCCC
GGTCTACTTTTCGCATTGTGAGGTGCTGGATAAACCGTGTGAAGAATTTG
ATCCCAGGAGTGTGTACCTGCAGGAAGGGCACCGCTTTGTGAAGTCTCAA
AACCTTGATGGACTCATGCTGTTGAACCGCTTGGTGGAGCTTCGACCAGA
GCTAATTGATCAAATTGTGGACGATGGCATTCCCATCCTCACGTATGGGA
AGAGCAACACTGATGCAAACGTCGTGAAGACGCAGTTTGGAAAGGGCGTG
AAAGGTGTCATCGCCGACGATGTTAACATTCTGATCAAGGAAATGAGAAC
GTGA
back to top

protein sequence of Ggra6867.t1

>Ggra6867.t1 ID=Ggra6867.t1|Name=Ggra6867.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=468bp
MTASMWPSTSAGPHYPPTPLCHPLLRIIPGSPRQAKPVVQWIVHPSSSSQ
PQLRASSRSESSLIDIPDSAFSEHWFDFSFHISDVTDYIAFNITAGTHRC
AATFLPQEFSNGEGVLSRAMVDDRNVPLAVLNFEFRYITPYTVPQPAVTK
KPFVPMFTGHRGMGSSGPHVPWRPLENSLESFLMATLRNNDVRTVELDVQ
LTRDNKVVLYHDWFVRPLDRSGNLIYDRESVKIPVNNLTFAQFNTLYQQS
YATNGPLSQQQLEIRRNVQQVHSIPDSCFEVRLRTLSEVCRLLPRDIGIL
LEIKYPAPNVQDDLVIPYPEKNHYVDLVLNELMSSGAAHPESERKVAFLS
FHADICAMLTMKQSQFPVYFSHCEVLDKPCEEFDPRSVYLQEGHRFVKSQ
NLDGLMLLNRLVELRPELIDQIVDDGIPILTYGKSNTDANVVKTQFGKGV
KGVIADDVNILIKEMRT*
back to top

mRNA from alignment at tig00000056_pilon:715844..717247-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6867.t1 ID=Ggra6867.t1|Name=Ggra6867.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1404bp|location=Sequence derived from alignment at tig00000056_pilon:715844..717247- (Gracilaria gracilis GNS1m male)
ATGACCGCCTCCATGTGGCCGTCCACTTCGGCAGGCCCTCATTACCCGCC
CACGCCCCTCTGTCATCCTCTGCTGCGCATTATTCCGGGCAGTCCTCGTC
AAGCCAAGCCCGTCGTGCAATGGATCGTGCACCCATCCTCTTCCTCCCAA
CCTCAGCTTCGCGCCTCCTCTCGTTCGGAATCGTCGCTCATTGATATCCC
CGACTCAGCGTTCAGCGAGCATTGGTTCGACTTTTCGTTCCATATCTCCG
ATGTCACCGACTACATTGCGTTCAACATCACCGCTGGCACGCATCGCTGC
GCCGCCACTTTCTTGCCGCAGGAGTTCTCCAACGGCGAGGGTGTCTTGTC
TCGTGCCATGGTGGATGATCGTAATGTTCCGCTCGCTGTACTCAATTTCG
AATTCCGTTACATCACCCCGTACACAGTGCCGCAGCCGGCAGTCACCAAG
AAGCCGTTTGTGCCCATGTTTACTGGCCATCGGGGTATGGGGTCTTCCGG
ACCCCATGTTCCGTGGCGCCCGCTGGAGAATTCTTTGGAATCCTTCTTGA
TGGCTACTCTTCGCAACAATGATGTGCGTACAGTCGAACTTGACGTGCAA
CTCACGCGGGATAACAAAGTCGTTCTGTATCATGACTGGTTCGTTCGCCC
GCTTGATCGCTCAGGTAACCTCATTTATGACCGAGAAAGTGTCAAGATTC
CTGTCAACAATCTTACATTTGCTCAGTTTAACACATTGTATCAACAGTCT
TATGCTACTAATGGCCCGCTTTCGCAGCAACAACTAGAAATCCGCCGCAA
TGTACAACAAGTGCACTCCATCCCGGACTCGTGTTTTGAAGTTCGATTGC
GCACCCTGTCTGAGGTGTGCCGCTTGTTACCAAGGGACATTGGAATTTTG
CTGGAGATCAAGTACCCCGCTCCCAACGTTCAGGACGACCTAGTCATTCC
ATATCCTGAGAAGAATCACTATGTTGACCTTGTGTTGAATGAACTTATGT
CATCCGGTGCAGCCCATCCCGAATCGGAAAGAAAAGTCGCTTTTCTCTCG
TTTCATGCTGATATATGCGCAATGCTGACCATGAAGCAGAGTCAGTTCCC
GGTCTACTTTTCGCATTGTGAGGTGCTGGATAAACCGTGTGAAGAATTTG
ATCCCAGGAGTGTGTACCTGCAGGAAGGGCACCGCTTTGTGAAGTCTCAA
AACCTTGATGGACTCATGCTGTTGAACCGCTTGGTGGAGCTTCGACCAGA
GCTAATTGATCAAATTGTGGACGATGGCATTCCCATCCTCACGTATGGGA
AGAGCAACACTGATGCAAACGTCGTGAAGACGCAGTTTGGAAAGGGCGTG
AAAGGTGTCATCGCCGACGATGTTAACATTCTGATCAAGGAAATGAGAAC
GTGA
back to top

Coding sequence (CDS) from alignment at tig00000056_pilon:715844..717247-

>Ggra6867.t1 ID=Ggra6867.t1|Name=Ggra6867.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1404bp|location=Sequence derived from alignment at tig00000056_pilon:715844..717247- (Gracilaria gracilis GNS1m male)
ATGACCGCCTCCATGTGGCCGTCCACTTCGGCAGGCCCTCATTACCCGCC
CACGCCCCTCTGTCATCCTCTGCTGCGCATTATTCCGGGCAGTCCTCGTC
AAGCCAAGCCCGTCGTGCAATGGATCGTGCACCCATCCTCTTCCTCCCAA
CCTCAGCTTCGCGCCTCCTCTCGTTCGGAATCGTCGCTCATTGATATCCC
CGACTCAGCGTTCAGCGAGCATTGGTTCGACTTTTCGTTCCATATCTCCG
ATGTCACCGACTACATTGCGTTCAACATCACCGCTGGCACGCATCGCTGC
GCCGCCACTTTCTTGCCGCAGGAGTTCTCCAACGGCGAGGGTGTCTTGTC
TCGTGCCATGGTGGATGATCGTAATGTTCCGCTCGCTGTACTCAATTTCG
AATTCCGTTACATCACCCCGTACACAGTGCCGCAGCCGGCAGTCACCAAG
AAGCCGTTTGTGCCCATGTTTACTGGCCATCGGGGTATGGGGTCTTCCGG
ACCCCATGTTCCGTGGCGCCCGCTGGAGAATTCTTTGGAATCCTTCTTGA
TGGCTACTCTTCGCAACAATGATGTGCGTACAGTCGAACTTGACGTGCAA
CTCACGCGGGATAACAAAGTCGTTCTGTATCATGACTGGTTCGTTCGCCC
GCTTGATCGCTCAGGTAACCTCATTTATGACCGAGAAAGTGTCAAGATTC
CTGTCAACAATCTTACATTTGCTCAGTTTAACACATTGTATCAACAGTCT
TATGCTACTAATGGCCCGCTTTCGCAGCAACAACTAGAAATCCGCCGCAA
TGTACAACAAGTGCACTCCATCCCGGACTCGTGTTTTGAAGTTCGATTGC
GCACCCTGTCTGAGGTGTGCCGCTTGTTACCAAGGGACATTGGAATTTTG
CTGGAGATCAAGTACCCCGCTCCCAACGTTCAGGACGACCTAGTCATTCC
ATATCCTGAGAAGAATCACTATGTTGACCTTGTGTTGAATGAACTTATGT
CATCCGGTGCAGCCCATCCCGAATCGGAAAGAAAAGTCGCTTTTCTCTCG
TTTCATGCTGATATATGCGCAATGCTGACCATGAAGCAGAGTCAGTTCCC
GGTCTACTTTTCGCATTGTGAGGTGCTGGATAAACCGTGTGAAGAATTTG
ATCCCAGGAGTGTGTACCTGCAGGAAGGGCACCGCTTTGTGAAGTCTCAA
AACCTTGATGGACTCATGCTGTTGAACCGCTTGGTGGAGCTTCGACCAGA
GCTAATTGATCAAATTGTGGACGATGGCATTCCCATCCTCACGTATGGGA
AGAGCAACACTGATGCAAACGTCGTGAAGACGCAGTTTGGAAAGGGCGTG
AAAGGTGTCATCGCCGACGATGTTAACATTCTGATCAAGGAAATGAGAAC
GTGA
back to top