Ggra6865.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6865.t1
Unique Name	Ggra6865.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	443

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:712100..713428 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6865	Ggra6865	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 712100..713428 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6865.t1.stop1	Ggra6865.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 712100..712102 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6865.t1.CDS1	Ggra6865.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 712100..713428 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6865.t1.exon1	Ggra6865.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 712100..713428 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6865.t1.start1	Ggra6865.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 713426..713428 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6865.t1	Ggra6865.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 712100..713428 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:712100..713428-
coding sequence from alignment at tig00000056_pilon:712100..713428-

mRNA sequence

>Ggra6865.t1 ID=Ggra6865.t1|Name=Ggra6865.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=443bp
MDFVDYGWLSKEHVVHTSNCVRSTIFLATRSECGYFRDATTSETISDRDA
LSETFSHACSVDRFNSSFEYPELVSGDYIVMVCENWPPAESMPPVVMARE
SRKILVVQQEDVTLYLSHCMRGLLHKPKRAAACVIPLESTLDNLNVFNLL
ERSAPIWHRLGNWAAYDDCSSHGTTDKLGITTCIRIAQFMNTISSGNRIN
LTETKSLKHIYVNTAALKMFRLSQDALYTGMDALKLLHIATNEMHGCPPE
QYVEVDKGVCQGIDTEFRKTKDLAKRLENIEYHPQGAKSSRKFIYRLLAW
GYVVLTVVLALIVAVLNVASRDNVFERLTDMVAVLTTMLVTVFGLLKLTS
EDPNAIRNTLRGFKILHYFEEVMREIECNDVEEFRRALSVGAVDADWLDR
EGSCYADLSRSGNIRDSIGSTLGELISAGWFFSKYRRTMHTI*

spliced messenger RNA

>Ggra6865.t1 ID=Ggra6865.t1|Name=Ggra6865.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1329bp|location=Sequence derived from alignment at tig00000056_pilon:712100..713428- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTTCGTCGATTATGGTTGGTTGTCCAAGGAGCACGTGGTGCACAC
ATCAAATTGTGTTAGAAGTACGATATTTCTAGCTACACGGTCTGAGTGCG
GCTATTTTCGGGACGCGACCACCAGCGAAACAATATCGGACAGGGATGCG
CTCTCTGAAACATTCTCCCACGCATGTTCTGTAGACAGGTTTAATAGCTC
ATTCGAATATCCCGAACTGGTGTCTGGCGACTATATCGTGATGGTGTGCG
AGAACTGGCCCCCAGCTGAAAGCATGCCACCCGTGGTGATGGCTCGAGAG
TCGCGGAAAATACTTGTTGTCCAACAGGAGGATGTCACTCTATATCTTTC
TCATTGCATGAGAGGACTGCTGCACAAACCGAAACGAGCTGCAGCTTGCG
TGATACCGTTGGAAAGTACTCTGGACAACCTAAATGTTTTCAACTTACTT
GAAAGAAGCGCACCTATTTGGCATCGATTGGGAAACTGGGCAGCGTACGA
CGATTGCTCTTCGCATGGGACAACCGACAAGCTGGGAATCACGACTTGCA
TAAGAATTGCCCAGTTCATGAACACGATTTCTAGCGGGAACCGAATCAAT
CTTACTGAGACAAAGAGCCTCAAGCACATTTACGTCAACACTGCGGCACT
GAAAATGTTTAGACTCAGTCAGGACGCTTTGTACACCGGAATGGATGCCC
TAAAGTTGTTGCACATCGCAACAAACGAGATGCATGGATGTCCACCAGAG
CAATATGTAGAAGTAGATAAAGGTGTCTGTCAAGGAATTGATACCGAATT
CCGCAAGACAAAAGACTTAGCAAAGAGATTGGAGAACATTGAATATCATC
CGCAAGGAGCTAAAAGCTCAAGAAAATTCATCTATCGACTTCTGGCATGG
GGATACGTCGTGCTAACTGTTGTTCTTGCATTGATTGTTGCTGTGCTCAA
TGTAGCTTCGCGAGACAACGTATTTGAAAGGTTAACAGACATGGTAGCCG
TCCTGACCACCATGCTGGTAACGGTATTCGGTTTGCTTAAGCTTACCAGC
GAAGACCCAAACGCAATTAGAAACACTCTGCGAGGGTTCAAGATACTCCA
TTACTTTGAGGAGGTAATGAGGGAGATTGAGTGTAATGATGTTGAGGAAT
TTAGAAGGGCTCTGTCCGTTGGAGCCGTCGATGCAGATTGGCTGGATCGA
GAAGGAAGTTGTTACGCAGATCTTTCGAGAAGCGGAAATATCCGAGACTC
GATTGGTAGTACCTTAGGGGAACTAATCTCTGCTGGATGGTTTTTCTCCA
AGTACCGTCGTACAATGCACACAATATAG

protein sequence of Ggra6865.t1

>Ggra6865.t1 ID=Ggra6865.t1|Name=Ggra6865.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=443bp
MDFVDYGWLSKEHVVHTSNCVRSTIFLATRSECGYFRDATTSETISDRDA
LSETFSHACSVDRFNSSFEYPELVSGDYIVMVCENWPPAESMPPVVMARE
SRKILVVQQEDVTLYLSHCMRGLLHKPKRAAACVIPLESTLDNLNVFNLL
ERSAPIWHRLGNWAAYDDCSSHGTTDKLGITTCIRIAQFMNTISSGNRIN
LTETKSLKHIYVNTAALKMFRLSQDALYTGMDALKLLHIATNEMHGCPPE
QYVEVDKGVCQGIDTEFRKTKDLAKRLENIEYHPQGAKSSRKFIYRLLAW
GYVVLTVVLALIVAVLNVASRDNVFERLTDMVAVLTTMLVTVFGLLKLTS
EDPNAIRNTLRGFKILHYFEEVMREIECNDVEEFRRALSVGAVDADWLDR
EGSCYADLSRSGNIRDSIGSTLGELISAGWFFSKYRRTMHTI*

mRNA from alignment at tig00000056_pilon:712100..713428-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6865.t1 ID=Ggra6865.t1|Name=Ggra6865.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1329bp|location=Sequence derived from alignment at tig00000056_pilon:712100..713428- (Gracilaria gracilis GNS1m male)
ATGGACTTCGTCGATTATGGTTGGTTGTCCAAGGAGCACGTGGTGCACAC
ATCAAATTGTGTTAGAAGTACGATATTTCTAGCTACACGGTCTGAGTGCG
GCTATTTTCGGGACGCGACCACCAGCGAAACAATATCGGACAGGGATGCG
CTCTCTGAAACATTCTCCCACGCATGTTCTGTAGACAGGTTTAATAGCTC
ATTCGAATATCCCGAACTGGTGTCTGGCGACTATATCGTGATGGTGTGCG
AGAACTGGCCCCCAGCTGAAAGCATGCCACCCGTGGTGATGGCTCGAGAG
TCGCGGAAAATACTTGTTGTCCAACAGGAGGATGTCACTCTATATCTTTC
TCATTGCATGAGAGGACTGCTGCACAAACCGAAACGAGCTGCAGCTTGCG
TGATACCGTTGGAAAGTACTCTGGACAACCTAAATGTTTTCAACTTACTT
GAAAGAAGCGCACCTATTTGGCATCGATTGGGAAACTGGGCAGCGTACGA
CGATTGCTCTTCGCATGGGACAACCGACAAGCTGGGAATCACGACTTGCA
TAAGAATTGCCCAGTTCATGAACACGATTTCTAGCGGGAACCGAATCAAT
CTTACTGAGACAAAGAGCCTCAAGCACATTTACGTCAACACTGCGGCACT
GAAAATGTTTAGACTCAGTCAGGACGCTTTGTACACCGGAATGGATGCCC
TAAAGTTGTTGCACATCGCAACAAACGAGATGCATGGATGTCCACCAGAG
CAATATGTAGAAGTAGATAAAGGTGTCTGTCAAGGAATTGATACCGAATT
CCGCAAGACAAAAGACTTAGCAAAGAGATTGGAGAACATTGAATATCATC
CGCAAGGAGCTAAAAGCTCAAGAAAATTCATCTATCGACTTCTGGCATGG
GGATACGTCGTGCTAACTGTTGTTCTTGCATTGATTGTTGCTGTGCTCAA
TGTAGCTTCGCGAGACAACGTATTTGAAAGGTTAACAGACATGGTAGCCG
TCCTGACCACCATGCTGGTAACGGTATTCGGTTTGCTTAAGCTTACCAGC
GAAGACCCAAACGCAATTAGAAACACTCTGCGAGGGTTCAAGATACTCCA
TTACTTTGAGGAGGTAATGAGGGAGATTGAGTGTAATGATGTTGAGGAAT
TTAGAAGGGCTCTGTCCGTTGGAGCCGTCGATGCAGATTGGCTGGATCGA
GAAGGAAGTTGTTACGCAGATCTTTCGAGAAGCGGAAATATCCGAGACTC
GATTGGTAGTACCTTAGGGGAACTAATCTCTGCTGGATGGTTTTTCTCCA
AGTACCGTCGTACAATGCACACAATATAG

Coding sequence (CDS) from alignment at tig00000056_pilon:712100..713428-

>Ggra6865.t1 ID=Ggra6865.t1|Name=Ggra6865.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1329bp|location=Sequence derived from alignment at tig00000056_pilon:712100..713428- (Gracilaria gracilis GNS1m male)
ATGGACTTCGTCGATTATGGTTGGTTGTCCAAGGAGCACGTGGTGCACAC
ATCAAATTGTGTTAGAAGTACGATATTTCTAGCTACACGGTCTGAGTGCG
GCTATTTTCGGGACGCGACCACCAGCGAAACAATATCGGACAGGGATGCG
CTCTCTGAAACATTCTCCCACGCATGTTCTGTAGACAGGTTTAATAGCTC
ATTCGAATATCCCGAACTGGTGTCTGGCGACTATATCGTGATGGTGTGCG
AGAACTGGCCCCCAGCTGAAAGCATGCCACCCGTGGTGATGGCTCGAGAG
TCGCGGAAAATACTTGTTGTCCAACAGGAGGATGTCACTCTATATCTTTC
TCATTGCATGAGAGGACTGCTGCACAAACCGAAACGAGCTGCAGCTTGCG
TGATACCGTTGGAAAGTACTCTGGACAACCTAAATGTTTTCAACTTACTT
GAAAGAAGCGCACCTATTTGGCATCGATTGGGAAACTGGGCAGCGTACGA
CGATTGCTCTTCGCATGGGACAACCGACAAGCTGGGAATCACGACTTGCA
TAAGAATTGCCCAGTTCATGAACACGATTTCTAGCGGGAACCGAATCAAT
CTTACTGAGACAAAGAGCCTCAAGCACATTTACGTCAACACTGCGGCACT
GAAAATGTTTAGACTCAGTCAGGACGCTTTGTACACCGGAATGGATGCCC
TAAAGTTGTTGCACATCGCAACAAACGAGATGCATGGATGTCCACCAGAG
CAATATGTAGAAGTAGATAAAGGTGTCTGTCAAGGAATTGATACCGAATT
CCGCAAGACAAAAGACTTAGCAAAGAGATTGGAGAACATTGAATATCATC
CGCAAGGAGCTAAAAGCTCAAGAAAATTCATCTATCGACTTCTGGCATGG
GGATACGTCGTGCTAACTGTTGTTCTTGCATTGATTGTTGCTGTGCTCAA
TGTAGCTTCGCGAGACAACGTATTTGAAAGGTTAACAGACATGGTAGCCG
TCCTGACCACCATGCTGGTAACGGTATTCGGTTTGCTTAAGCTTACCAGC
GAAGACCCAAACGCAATTAGAAACACTCTGCGAGGGTTCAAGATACTCCA
TTACTTTGAGGAGGTAATGAGGGAGATTGAGTGTAATGATGTTGAGGAAT
TTAGAAGGGCTCTGTCCGTTGGAGCCGTCGATGCAGATTGGCTGGATCGA
GAAGGAAGTTGTTACGCAGATCTTTCGAGAAGCGGAAATATCCGAGACTC
GATTGGTAGTACCTTAGGGGAACTAATCTCTGCTGGATGGTTTTTCTCCA
AGTACCGTCGTACAATGCACACAATATAG