Ggra6864.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6864.t1
Unique Name	Ggra6864.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	576

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:705969..707696 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6864	Ggra6864	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 705969..707696 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6864.t1.stop1	Ggra6864.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 705969..705971 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6864.t1.CDS1	Ggra6864.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 705969..707696 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6864.t1.exon1	Ggra6864.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 705969..707696 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6864.t1.start1	Ggra6864.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 707694..707696 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6864.t1	Ggra6864.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 705969..707696 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:705969..707696-
coding sequence from alignment at tig00000056_pilon:705969..707696-

mRNA sequence

>Ggra6864.t1 ID=Ggra6864.t1|Name=Ggra6864.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=576bp
MGTSRKVSPTQMSAQPMPDIQTPGWCIYNSDDDSEDEVGSTLAPFDTSES
NYIRLHQERADYERCRWQKYEVPVSAPRRKSSKPLKPLFPTPQECAYYLH
TALATIAGSSKRKAPKREQVPAEYKAIASALSNVEEVLNSQIKHLSQHFP
STNTNSTKGKRCPLGSSPEKVHSTPYTPSVESGLSLLVHITATFAAHARP
LLNGLTEAAKQLDADFQPKVSELTFAALNKHFNLESATKSSSGRGSKRFE
NKSTSSANGLYSSSEPTMADIAKEMRRLIPEQYTFLKANYVLNPGYRLEG
TNRSLAKIASSCEHAEKFRPRTPSPPLPIETPKRPRVSGKVEKPTVAKVL
QKGKRARPAPVIPNGYRDHLSSPGPGSSQYSSQTPYTKRRKQEPVTITLP
PTPLTRKPPSPSFRTSPVASELQESRKRTASASIPGPLRRAQSFGMPGPS
RAVSSRQSSDQNSAMKHASFAPIVYRRPSEARQKLRENVKRRLPCVRTEE
DEFEMRAYEIDDEEDEGSENSDSSRSQSVSISPIANEVQKDSERYKTSQR
ITFRQVVDVDEPDVIEQPTVVDLDA*

spliced messenger RNA

>Ggra6864.t1 ID=Ggra6864.t1|Name=Ggra6864.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1728bp|location=Sequence derived from alignment at tig00000056_pilon:705969..707696- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCACTTCTCGCAAGGTGTCTCCGACGCAAATGAGTGCACAGCCGAT
GCCGGATATTCAAACCCCAGGATGGTGTATATACAATTCTGATGATGATT
CGGAAGATGAAGTAGGCTCGACGCTTGCTCCCTTCGACACTTCCGAGTCT
AATTACATTCGTCTTCATCAGGAACGTGCTGATTATGAACGCTGTCGATG
GCAAAAATACGAGGTTCCCGTTTCTGCACCTCGCCGAAAGAGCTCAAAGC
CGCTCAAACCCCTCTTTCCCACTCCTCAGGAGTGTGCATATTATCTTCAC
ACCGCGTTGGCAACCATCGCTGGCTCTAGCAAGAGAAAGGCTCCCAAAAG
AGAGCAAGTTCCGGCCGAATACAAAGCGATCGCTAGCGCTCTCAGCAATG
TAGAGGAGGTTCTCAACTCTCAGATTAAACATCTAAGCCAGCATTTCCCT
TCCACGAACACCAATTCGACAAAAGGTAAGAGATGTCCGCTGGGTTCTTC
TCCGGAAAAAGTGCACTCAACCCCGTACACCCCGAGCGTCGAATCTGGTC
TCAGCTTACTTGTCCATATAACCGCAACATTTGCCGCACATGCCAGACCA
TTACTCAACGGACTAACAGAAGCTGCGAAGCAACTAGATGCTGATTTCCA
ACCAAAGGTATCCGAGCTAACTTTCGCAGCGCTTAACAAGCATTTTAATC
TAGAATCGGCAACAAAGAGCAGTAGCGGACGTGGTTCCAAACGGTTTGAG
AACAAGTCTACTTCTTCCGCAAATGGTCTGTATTCAAGTTCTGAACCAAC
TATGGCTGACATTGCTAAAGAGATGCGGCGTTTGATACCGGAACAGTACA
CTTTCTTGAAGGCAAACTATGTTCTTAACCCGGGTTATCGGTTGGAAGGT
ACGAATCGATCACTGGCTAAGATAGCCTCATCATGTGAACATGCAGAGAA
ATTCCGACCTCGCACTCCCTCTCCACCTCTACCCATAGAAACCCCAAAGC
GTCCCCGAGTGTCCGGGAAAGTCGAGAAACCGACGGTTGCGAAAGTGCTG
CAAAAAGGGAAGCGCGCGAGACCTGCGCCAGTCATCCCCAATGGATATCG
CGATCATTTATCAAGTCCTGGACCAGGTTCAAGTCAATACTCCTCGCAAA
CCCCCTATACAAAGCGACGGAAGCAAGAACCGGTTACAATAACTCTCCCA
CCTACACCACTAACCCGTAAACCTCCGTCACCATCCTTCCGCACGTCGCC
TGTGGCATCAGAACTACAGGAATCAAGGAAACGCACTGCTTCTGCCTCGA
TACCAGGACCTCTGCGAAGGGCGCAAAGTTTTGGCATGCCCGGACCGTCT
CGGGCAGTATCCTCCCGCCAGAGCAGTGATCAGAACTCGGCGATGAAACA
TGCTTCTTTTGCCCCTATTGTCTACCGACGACCATCAGAAGCCCGACAGA
AGTTGCGAGAGAATGTGAAGCGGCGTTTACCCTGTGTCAGGACTGAGGAA
GACGAATTTGAAATGAGAGCTTACGAAATTGATGACGAAGAAGATGAAGG
ATCGGAGAATTCTGACTCATCTCGTTCTCAAAGCGTTTCTATCTCACCAA
TAGCAAACGAAGTACAGAAAGACAGCGAGCGCTACAAGACATCGCAGCGA
ATCACATTCCGTCAAGTAGTTGATGTAGACGAACCCGATGTGATCGAACA
ACCGACCGTTGTAGATCTTGATGCGTAG

protein sequence of Ggra6864.t1

>Ggra6864.t1 ID=Ggra6864.t1|Name=Ggra6864.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=576bp
MGTSRKVSPTQMSAQPMPDIQTPGWCIYNSDDDSEDEVGSTLAPFDTSES
NYIRLHQERADYERCRWQKYEVPVSAPRRKSSKPLKPLFPTPQECAYYLH
TALATIAGSSKRKAPKREQVPAEYKAIASALSNVEEVLNSQIKHLSQHFP
STNTNSTKGKRCPLGSSPEKVHSTPYTPSVESGLSLLVHITATFAAHARP
LLNGLTEAAKQLDADFQPKVSELTFAALNKHFNLESATKSSSGRGSKRFE
NKSTSSANGLYSSSEPTMADIAKEMRRLIPEQYTFLKANYVLNPGYRLEG
TNRSLAKIASSCEHAEKFRPRTPSPPLPIETPKRPRVSGKVEKPTVAKVL
QKGKRARPAPVIPNGYRDHLSSPGPGSSQYSSQTPYTKRRKQEPVTITLP
PTPLTRKPPSPSFRTSPVASELQESRKRTASASIPGPLRRAQSFGMPGPS
RAVSSRQSSDQNSAMKHASFAPIVYRRPSEARQKLRENVKRRLPCVRTEE
DEFEMRAYEIDDEEDEGSENSDSSRSQSVSISPIANEVQKDSERYKTSQR
ITFRQVVDVDEPDVIEQPTVVDLDA*

mRNA from alignment at tig00000056_pilon:705969..707696-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6864.t1 ID=Ggra6864.t1|Name=Ggra6864.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1728bp|location=Sequence derived from alignment at tig00000056_pilon:705969..707696- (Gracilaria gracilis GNS1m male)
ATGGGCACTTCTCGCAAGGTGTCTCCGACGCAAATGAGTGCACAGCCGAT
GCCGGATATTCAAACCCCAGGATGGTGTATATACAATTCTGATGATGATT
CGGAAGATGAAGTAGGCTCGACGCTTGCTCCCTTCGACACTTCCGAGTCT
AATTACATTCGTCTTCATCAGGAACGTGCTGATTATGAACGCTGTCGATG
GCAAAAATACGAGGTTCCCGTTTCTGCACCTCGCCGAAAGAGCTCAAAGC
CGCTCAAACCCCTCTTTCCCACTCCTCAGGAGTGTGCATATTATCTTCAC
ACCGCGTTGGCAACCATCGCTGGCTCTAGCAAGAGAAAGGCTCCCAAAAG
AGAGCAAGTTCCGGCCGAATACAAAGCGATCGCTAGCGCTCTCAGCAATG
TAGAGGAGGTTCTCAACTCTCAGATTAAACATCTAAGCCAGCATTTCCCT
TCCACGAACACCAATTCGACAAAAGGTAAGAGATGTCCGCTGGGTTCTTC
TCCGGAAAAAGTGCACTCAACCCCGTACACCCCGAGCGTCGAATCTGGTC
TCAGCTTACTTGTCCATATAACCGCAACATTTGCCGCACATGCCAGACCA
TTACTCAACGGACTAACAGAAGCTGCGAAGCAACTAGATGCTGATTTCCA
ACCAAAGGTATCCGAGCTAACTTTCGCAGCGCTTAACAAGCATTTTAATC
TAGAATCGGCAACAAAGAGCAGTAGCGGACGTGGTTCCAAACGGTTTGAG
AACAAGTCTACTTCTTCCGCAAATGGTCTGTATTCAAGTTCTGAACCAAC
TATGGCTGACATTGCTAAAGAGATGCGGCGTTTGATACCGGAACAGTACA
CTTTCTTGAAGGCAAACTATGTTCTTAACCCGGGTTATCGGTTGGAAGGT
ACGAATCGATCACTGGCTAAGATAGCCTCATCATGTGAACATGCAGAGAA
ATTCCGACCTCGCACTCCCTCTCCACCTCTACCCATAGAAACCCCAAAGC
GTCCCCGAGTGTCCGGGAAAGTCGAGAAACCGACGGTTGCGAAAGTGCTG
CAAAAAGGGAAGCGCGCGAGACCTGCGCCAGTCATCCCCAATGGATATCG
CGATCATTTATCAAGTCCTGGACCAGGTTCAAGTCAATACTCCTCGCAAA
CCCCCTATACAAAGCGACGGAAGCAAGAACCGGTTACAATAACTCTCCCA
CCTACACCACTAACCCGTAAACCTCCGTCACCATCCTTCCGCACGTCGCC
TGTGGCATCAGAACTACAGGAATCAAGGAAACGCACTGCTTCTGCCTCGA
TACCAGGACCTCTGCGAAGGGCGCAAAGTTTTGGCATGCCCGGACCGTCT
CGGGCAGTATCCTCCCGCCAGAGCAGTGATCAGAACTCGGCGATGAAACA
TGCTTCTTTTGCCCCTATTGTCTACCGACGACCATCAGAAGCCCGACAGA
AGTTGCGAGAGAATGTGAAGCGGCGTTTACCCTGTGTCAGGACTGAGGAA
GACGAATTTGAAATGAGAGCTTACGAAATTGATGACGAAGAAGATGAAGG
ATCGGAGAATTCTGACTCATCTCGTTCTCAAAGCGTTTCTATCTCACCAA
TAGCAAACGAAGTACAGAAAGACAGCGAGCGCTACAAGACATCGCAGCGA
ATCACATTCCGTCAAGTAGTTGATGTAGACGAACCCGATGTGATCGAACA
ACCGACCGTTGTAGATCTTGATGCGTAG

Coding sequence (CDS) from alignment at tig00000056_pilon:705969..707696-

>Ggra6864.t1 ID=Ggra6864.t1|Name=Ggra6864.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1728bp|location=Sequence derived from alignment at tig00000056_pilon:705969..707696- (Gracilaria gracilis GNS1m male)
ATGGGCACTTCTCGCAAGGTGTCTCCGACGCAAATGAGTGCACAGCCGAT
GCCGGATATTCAAACCCCAGGATGGTGTATATACAATTCTGATGATGATT
CGGAAGATGAAGTAGGCTCGACGCTTGCTCCCTTCGACACTTCCGAGTCT
AATTACATTCGTCTTCATCAGGAACGTGCTGATTATGAACGCTGTCGATG
GCAAAAATACGAGGTTCCCGTTTCTGCACCTCGCCGAAAGAGCTCAAAGC
CGCTCAAACCCCTCTTTCCCACTCCTCAGGAGTGTGCATATTATCTTCAC
ACCGCGTTGGCAACCATCGCTGGCTCTAGCAAGAGAAAGGCTCCCAAAAG
AGAGCAAGTTCCGGCCGAATACAAAGCGATCGCTAGCGCTCTCAGCAATG
TAGAGGAGGTTCTCAACTCTCAGATTAAACATCTAAGCCAGCATTTCCCT
TCCACGAACACCAATTCGACAAAAGGTAAGAGATGTCCGCTGGGTTCTTC
TCCGGAAAAAGTGCACTCAACCCCGTACACCCCGAGCGTCGAATCTGGTC
TCAGCTTACTTGTCCATATAACCGCAACATTTGCCGCACATGCCAGACCA
TTACTCAACGGACTAACAGAAGCTGCGAAGCAACTAGATGCTGATTTCCA
ACCAAAGGTATCCGAGCTAACTTTCGCAGCGCTTAACAAGCATTTTAATC
TAGAATCGGCAACAAAGAGCAGTAGCGGACGTGGTTCCAAACGGTTTGAG
AACAAGTCTACTTCTTCCGCAAATGGTCTGTATTCAAGTTCTGAACCAAC
TATGGCTGACATTGCTAAAGAGATGCGGCGTTTGATACCGGAACAGTACA
CTTTCTTGAAGGCAAACTATGTTCTTAACCCGGGTTATCGGTTGGAAGGT
ACGAATCGATCACTGGCTAAGATAGCCTCATCATGTGAACATGCAGAGAA
ATTCCGACCTCGCACTCCCTCTCCACCTCTACCCATAGAAACCCCAAAGC
GTCCCCGAGTGTCCGGGAAAGTCGAGAAACCGACGGTTGCGAAAGTGCTG
CAAAAAGGGAAGCGCGCGAGACCTGCGCCAGTCATCCCCAATGGATATCG
CGATCATTTATCAAGTCCTGGACCAGGTTCAAGTCAATACTCCTCGCAAA
CCCCCTATACAAAGCGACGGAAGCAAGAACCGGTTACAATAACTCTCCCA
CCTACACCACTAACCCGTAAACCTCCGTCACCATCCTTCCGCACGTCGCC
TGTGGCATCAGAACTACAGGAATCAAGGAAACGCACTGCTTCTGCCTCGA
TACCAGGACCTCTGCGAAGGGCGCAAAGTTTTGGCATGCCCGGACCGTCT
CGGGCAGTATCCTCCCGCCAGAGCAGTGATCAGAACTCGGCGATGAAACA
TGCTTCTTTTGCCCCTATTGTCTACCGACGACCATCAGAAGCCCGACAGA
AGTTGCGAGAGAATGTGAAGCGGCGTTTACCCTGTGTCAGGACTGAGGAA
GACGAATTTGAAATGAGAGCTTACGAAATTGATGACGAAGAAGATGAAGG
ATCGGAGAATTCTGACTCATCTCGTTCTCAAAGCGTTTCTATCTCACCAA
TAGCAAACGAAGTACAGAAAGACAGCGAGCGCTACAAGACATCGCAGCGA
ATCACATTCCGTCAAGTAGTTGATGTAGACGAACCCGATGTGATCGAACA
ACCGACCGTTGTAGATCTTGATGCGTAG