Ggra6855.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6855.t1
Unique Name	Ggra6855.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	701

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:682600..684702 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3218.PP1S234_73V6.1
PFAMs	SRP72,SRP_TPR_like
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K03108
KEGG TC	3.A.5.9
KEGG Pathway	ko03060,map03060
GOs	GO:0003674,GO:0003676,GO:0003723,GO:0005047,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005786,GO:0005829,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008312,GO:0012505,GO:0015031,GO:0015833,GO:0019904,GO:0030911,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042221,GO:0042493,GO:0042886,GO:0043021,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0046907,GO:0048500,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0097159,GO:1901363,GO:1990904
Evalue	5.69e-41
EggNOG OGs	KOG2376@1\|root,KOG2376@2759\|Eukaryota,37KI0@33090\|Viridiplantae,3G8VG@35493\|Streptophyta
Description	Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane
COG category	U
BRITE	ko00000,ko00001,ko02044

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6855	Ggra6855	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 682600..684702 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6855.t1.stop1	Ggra6855.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 682600..682602 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6855.t1.CDS1	Ggra6855.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 682600..684702 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6855.t1.exon1	Ggra6855.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 682600..684702 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6855.t1.start1	Ggra6855.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 684700..684702 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6855.t1	Ggra6855.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 682600..684702 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:682600..684702-
coding sequence from alignment at tig00000056_pilon:682600..684702-

mRNA sequence

>Ggra6855.t1 ID=Ggra6855.t1|Name=Ggra6855.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=701bp
MTASDLQDGTVDELQQLFNRGQYETVLNRVNQFRKRNKKRSPSVNHVLDA
ARAFSLIHLGRSDDALPSINALLQAKSPPFQEQLIYAKAYAAWARNEHLV
EAIDIVAPMQGEDMQKLKAQLLYRAGRYEEAANLYELLLSHARDTLKEKK
QPAATSRWRLPGITSRTASVASPVTAAELEQLTSAVNELATNAMASMILA
RTHDKVSSVHDGLRPSYEIEYNAACNHIALEDFETAGGCLEKAEALINSE
LDEEDDDIEEATAPLFVQQAYLNHMAGNIEASRRSYHEVVSGRRCDAASL
AVAANNLTVAIGQLALEKSTLSVAQDDIRTLSKQQHEALVEGLKKMKTTA
SKNVVRKLTSHQRQAMGRNRAVLFVQMGRLDACRSEIEMLKVHYSDDALV
RLLEASLQAKKGQLKNADKILLEAVDTPIIRAARIQLAASHGEHKRAAEL
LQELFPDSPAAICTAASFLEQCDQYQDGISLLKKLISSTSGDLKTSASRE
LAAMLLRNGLYRESADILRGCIKASSNDALTTAQLVVATSHFDPDEADRI
ASAIPGTSLRATAEDAERLEQLPPPKRRHMSNRTFDTTIDDKDKLHTAIH
RQEKKKKPKKKRLPKNFDPDGPPPDPERWLPKTLRSGYRKKKAKRDQAPF
RGSQGADATSAEAAAQNMGDKAASKASSAQANALPPRSRPRMQRRKKGRK
*

spliced messenger RNA

>Ggra6855.t1 ID=Ggra6855.t1|Name=Ggra6855.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2103bp|location=Sequence derived from alignment at tig00000056_pilon:682600..684702- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCCTCTGACCTTCAAGATGGCACCGTGGATGAACTTCAGCAGCT
TTTCAATCGAGGACAATATGAAACGGTTCTAAATCGCGTGAACCAATTCC
GGAAACGTAACAAGAAACGATCACCGTCTGTCAATCACGTTCTGGATGCC
GCCCGTGCGTTCTCGCTAATTCATTTGGGGAGATCGGATGATGCGCTTCC
ATCTATTAATGCTCTCTTGCAGGCCAAGTCTCCACCCTTCCAAGAACAGC
TTATATACGCTAAGGCTTACGCTGCATGGGCTCGAAACGAACATTTGGTT
GAAGCGATCGATATAGTGGCTCCAATGCAAGGCGAAGACATGCAAAAACT
AAAAGCACAGCTTCTCTATCGTGCAGGGCGTTACGAAGAAGCAGCTAATC
TGTATGAGCTCCTTTTGAGCCATGCACGAGACACGCTCAAAGAGAAAAAG
CAACCGGCTGCGACTTCTCGTTGGAGGTTGCCCGGTATTACCTCGAGAAC
TGCTTCGGTCGCTTCGCCAGTGACTGCAGCCGAGCTGGAGCAGTTGACAA
GCGCTGTTAACGAACTTGCAACCAACGCTATGGCTTCGATGATACTCGCG
CGAACACACGATAAAGTTTCTTCTGTTCACGATGGTCTTCGGCCGAGTTA
CGAAATTGAATACAATGCGGCATGTAACCATATCGCCCTAGAAGATTTCG
AGACCGCTGGGGGTTGTTTAGAAAAGGCGGAAGCTTTAATTAATTCCGAA
CTTGACGAGGAAGATGATGATATTGAAGAAGCAACTGCTCCACTTTTTGT
GCAACAGGCGTATTTGAATCACATGGCCGGAAATATTGAAGCTTCCAGGC
GTTCATACCACGAAGTCGTTAGCGGACGAAGGTGTGATGCTGCATCTCTA
GCTGTAGCGGCTAACAATCTTACTGTGGCAATTGGGCAACTCGCCCTTGA
GAAATCTACCCTTTCTGTTGCCCAGGACGACATAAGAACGTTATCGAAAC
AACAACATGAAGCGCTAGTTGAAGGACTGAAGAAAATGAAGACGACAGCC
AGCAAGAACGTGGTCCGAAAGCTTACTTCACACCAGCGCCAGGCAATGGG
CAGGAACCGAGCAGTGCTTTTTGTGCAGATGGGCAGACTCGATGCCTGTC
GTTCTGAAATCGAGATGTTGAAAGTGCATTACTCAGACGATGCCCTTGTA
CGTCTGCTTGAAGCAAGTCTCCAAGCCAAGAAAGGGCAGCTAAAGAACGC
TGATAAGATACTTTTGGAAGCTGTAGACACTCCCATTATTCGGGCAGCGA
GAATCCAGCTAGCTGCTTCGCATGGTGAACACAAGAGGGCCGCGGAACTG
CTTCAGGAGCTGTTCCCAGATAGCCCTGCTGCAATTTGCACGGCTGCATC
TTTCCTAGAGCAATGTGATCAGTACCAGGATGGTATATCTCTTCTGAAGA
AGTTAATCTCAAGTACGAGTGGTGATCTGAAAACGAGTGCTAGCCGTGAA
CTCGCTGCAATGCTTCTCAGAAACGGCTTGTATCGAGAAAGCGCTGACAT
TCTTAGGGGCTGTATAAAAGCTTCTAGTAACGATGCACTCACCACAGCAC
AATTGGTGGTCGCTACTTCACATTTTGATCCGGACGAAGCAGATCGTATT
GCATCCGCAATCCCAGGCACGAGCTTGCGTGCGACGGCAGAAGATGCTGA
AAGGCTAGAACAGCTCCCGCCTCCAAAACGAAGGCACATGTCGAATCGAA
CTTTTGATACCACGATCGATGACAAAGACAAATTGCATACAGCGATTCAT
CGTCAAGAGAAAAAGAAGAAACCCAAGAAGAAGAGATTACCCAAGAACTT
CGACCCAGATGGCCCTCCACCCGACCCAGAGAGGTGGCTGCCGAAAACAC
TACGGTCGGGTTACAGAAAGAAGAAAGCAAAAAGAGATCAAGCACCTTTC
CGAGGTTCCCAAGGAGCTGATGCAACATCAGCTGAAGCTGCTGCTCAAAA
CATGGGCGACAAGGCTGCGTCTAAGGCCTCGTCTGCTCAGGCCAATGCCT
TGCCACCACGAAGTCGACCACGAATGCAAAGAAGGAAGAAAGGTCGGAAG
TAG

protein sequence of Ggra6855.t1

>Ggra6855.t1 ID=Ggra6855.t1|Name=Ggra6855.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=701bp
MTASDLQDGTVDELQQLFNRGQYETVLNRVNQFRKRNKKRSPSVNHVLDA
ARAFSLIHLGRSDDALPSINALLQAKSPPFQEQLIYAKAYAAWARNEHLV
EAIDIVAPMQGEDMQKLKAQLLYRAGRYEEAANLYELLLSHARDTLKEKK
QPAATSRWRLPGITSRTASVASPVTAAELEQLTSAVNELATNAMASMILA
RTHDKVSSVHDGLRPSYEIEYNAACNHIALEDFETAGGCLEKAEALINSE
LDEEDDDIEEATAPLFVQQAYLNHMAGNIEASRRSYHEVVSGRRCDAASL
AVAANNLTVAIGQLALEKSTLSVAQDDIRTLSKQQHEALVEGLKKMKTTA
SKNVVRKLTSHQRQAMGRNRAVLFVQMGRLDACRSEIEMLKVHYSDDALV
RLLEASLQAKKGQLKNADKILLEAVDTPIIRAARIQLAASHGEHKRAAEL
LQELFPDSPAAICTAASFLEQCDQYQDGISLLKKLISSTSGDLKTSASRE
LAAMLLRNGLYRESADILRGCIKASSNDALTTAQLVVATSHFDPDEADRI
ASAIPGTSLRATAEDAERLEQLPPPKRRHMSNRTFDTTIDDKDKLHTAIH
RQEKKKKPKKKRLPKNFDPDGPPPDPERWLPKTLRSGYRKKKAKRDQAPF
RGSQGADATSAEAAAQNMGDKAASKASSAQANALPPRSRPRMQRRKKGRK
*

mRNA from alignment at tig00000056_pilon:682600..684702-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6855.t1 ID=Ggra6855.t1|Name=Ggra6855.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2103bp|location=Sequence derived from alignment at tig00000056_pilon:682600..684702- (Gracilaria gracilis GNS1m male)
ATGACCGCCTCTGACCTTCAAGATGGCACCGTGGATGAACTTCAGCAGCT
TTTCAATCGAGGACAATATGAAACGGTTCTAAATCGCGTGAACCAATTCC
GGAAACGTAACAAGAAACGATCACCGTCTGTCAATCACGTTCTGGATGCC
GCCCGTGCGTTCTCGCTAATTCATTTGGGGAGATCGGATGATGCGCTTCC
ATCTATTAATGCTCTCTTGCAGGCCAAGTCTCCACCCTTCCAAGAACAGC
TTATATACGCTAAGGCTTACGCTGCATGGGCTCGAAACGAACATTTGGTT
GAAGCGATCGATATAGTGGCTCCAATGCAAGGCGAAGACATGCAAAAACT
AAAAGCACAGCTTCTCTATCGTGCAGGGCGTTACGAAGAAGCAGCTAATC
TGTATGAGCTCCTTTTGAGCCATGCACGAGACACGCTCAAAGAGAAAAAG
CAACCGGCTGCGACTTCTCGTTGGAGGTTGCCCGGTATTACCTCGAGAAC
TGCTTCGGTCGCTTCGCCAGTGACTGCAGCCGAGCTGGAGCAGTTGACAA
GCGCTGTTAACGAACTTGCAACCAACGCTATGGCTTCGATGATACTCGCG
CGAACACACGATAAAGTTTCTTCTGTTCACGATGGTCTTCGGCCGAGTTA
CGAAATTGAATACAATGCGGCATGTAACCATATCGCCCTAGAAGATTTCG
AGACCGCTGGGGGTTGTTTAGAAAAGGCGGAAGCTTTAATTAATTCCGAA
CTTGACGAGGAAGATGATGATATTGAAGAAGCAACTGCTCCACTTTTTGT
GCAACAGGCGTATTTGAATCACATGGCCGGAAATATTGAAGCTTCCAGGC
GTTCATACCACGAAGTCGTTAGCGGACGAAGGTGTGATGCTGCATCTCTA
GCTGTAGCGGCTAACAATCTTACTGTGGCAATTGGGCAACTCGCCCTTGA
GAAATCTACCCTTTCTGTTGCCCAGGACGACATAAGAACGTTATCGAAAC
AACAACATGAAGCGCTAGTTGAAGGACTGAAGAAAATGAAGACGACAGCC
AGCAAGAACGTGGTCCGAAAGCTTACTTCACACCAGCGCCAGGCAATGGG
CAGGAACCGAGCAGTGCTTTTTGTGCAGATGGGCAGACTCGATGCCTGTC
GTTCTGAAATCGAGATGTTGAAAGTGCATTACTCAGACGATGCCCTTGTA
CGTCTGCTTGAAGCAAGTCTCCAAGCCAAGAAAGGGCAGCTAAAGAACGC
TGATAAGATACTTTTGGAAGCTGTAGACACTCCCATTATTCGGGCAGCGA
GAATCCAGCTAGCTGCTTCGCATGGTGAACACAAGAGGGCCGCGGAACTG
CTTCAGGAGCTGTTCCCAGATAGCCCTGCTGCAATTTGCACGGCTGCATC
TTTCCTAGAGCAATGTGATCAGTACCAGGATGGTATATCTCTTCTGAAGA
AGTTAATCTCAAGTACGAGTGGTGATCTGAAAACGAGTGCTAGCCGTGAA
CTCGCTGCAATGCTTCTCAGAAACGGCTTGTATCGAGAAAGCGCTGACAT
TCTTAGGGGCTGTATAAAAGCTTCTAGTAACGATGCACTCACCACAGCAC
AATTGGTGGTCGCTACTTCACATTTTGATCCGGACGAAGCAGATCGTATT
GCATCCGCAATCCCAGGCACGAGCTTGCGTGCGACGGCAGAAGATGCTGA
AAGGCTAGAACAGCTCCCGCCTCCAAAACGAAGGCACATGTCGAATCGAA
CTTTTGATACCACGATCGATGACAAAGACAAATTGCATACAGCGATTCAT
CGTCAAGAGAAAAAGAAGAAACCCAAGAAGAAGAGATTACCCAAGAACTT
CGACCCAGATGGCCCTCCACCCGACCCAGAGAGGTGGCTGCCGAAAACAC
TACGGTCGGGTTACAGAAAGAAGAAAGCAAAAAGAGATCAAGCACCTTTC
CGAGGTTCCCAAGGAGCTGATGCAACATCAGCTGAAGCTGCTGCTCAAAA
CATGGGCGACAAGGCTGCGTCTAAGGCCTCGTCTGCTCAGGCCAATGCCT
TGCCACCACGAAGTCGACCACGAATGCAAAGAAGGAAGAAAGGTCGGAAG
TAG

Coding sequence (CDS) from alignment at tig00000056_pilon:682600..684702-

>Ggra6855.t1 ID=Ggra6855.t1|Name=Ggra6855.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2103bp|location=Sequence derived from alignment at tig00000056_pilon:682600..684702- (Gracilaria gracilis GNS1m male)
ATGACCGCCTCTGACCTTCAAGATGGCACCGTGGATGAACTTCAGCAGCT
TTTCAATCGAGGACAATATGAAACGGTTCTAAATCGCGTGAACCAATTCC
GGAAACGTAACAAGAAACGATCACCGTCTGTCAATCACGTTCTGGATGCC
GCCCGTGCGTTCTCGCTAATTCATTTGGGGAGATCGGATGATGCGCTTCC
ATCTATTAATGCTCTCTTGCAGGCCAAGTCTCCACCCTTCCAAGAACAGC
TTATATACGCTAAGGCTTACGCTGCATGGGCTCGAAACGAACATTTGGTT
GAAGCGATCGATATAGTGGCTCCAATGCAAGGCGAAGACATGCAAAAACT
AAAAGCACAGCTTCTCTATCGTGCAGGGCGTTACGAAGAAGCAGCTAATC
TGTATGAGCTCCTTTTGAGCCATGCACGAGACACGCTCAAAGAGAAAAAG
CAACCGGCTGCGACTTCTCGTTGGAGGTTGCCCGGTATTACCTCGAGAAC
TGCTTCGGTCGCTTCGCCAGTGACTGCAGCCGAGCTGGAGCAGTTGACAA
GCGCTGTTAACGAACTTGCAACCAACGCTATGGCTTCGATGATACTCGCG
CGAACACACGATAAAGTTTCTTCTGTTCACGATGGTCTTCGGCCGAGTTA
CGAAATTGAATACAATGCGGCATGTAACCATATCGCCCTAGAAGATTTCG
AGACCGCTGGGGGTTGTTTAGAAAAGGCGGAAGCTTTAATTAATTCCGAA
CTTGACGAGGAAGATGATGATATTGAAGAAGCAACTGCTCCACTTTTTGT
GCAACAGGCGTATTTGAATCACATGGCCGGAAATATTGAAGCTTCCAGGC
GTTCATACCACGAAGTCGTTAGCGGACGAAGGTGTGATGCTGCATCTCTA
GCTGTAGCGGCTAACAATCTTACTGTGGCAATTGGGCAACTCGCCCTTGA
GAAATCTACCCTTTCTGTTGCCCAGGACGACATAAGAACGTTATCGAAAC
AACAACATGAAGCGCTAGTTGAAGGACTGAAGAAAATGAAGACGACAGCC
AGCAAGAACGTGGTCCGAAAGCTTACTTCACACCAGCGCCAGGCAATGGG
CAGGAACCGAGCAGTGCTTTTTGTGCAGATGGGCAGACTCGATGCCTGTC
GTTCTGAAATCGAGATGTTGAAAGTGCATTACTCAGACGATGCCCTTGTA
CGTCTGCTTGAAGCAAGTCTCCAAGCCAAGAAAGGGCAGCTAAAGAACGC
TGATAAGATACTTTTGGAAGCTGTAGACACTCCCATTATTCGGGCAGCGA
GAATCCAGCTAGCTGCTTCGCATGGTGAACACAAGAGGGCCGCGGAACTG
CTTCAGGAGCTGTTCCCAGATAGCCCTGCTGCAATTTGCACGGCTGCATC
TTTCCTAGAGCAATGTGATCAGTACCAGGATGGTATATCTCTTCTGAAGA
AGTTAATCTCAAGTACGAGTGGTGATCTGAAAACGAGTGCTAGCCGTGAA
CTCGCTGCAATGCTTCTCAGAAACGGCTTGTATCGAGAAAGCGCTGACAT
TCTTAGGGGCTGTATAAAAGCTTCTAGTAACGATGCACTCACCACAGCAC
AATTGGTGGTCGCTACTTCACATTTTGATCCGGACGAAGCAGATCGTATT
GCATCCGCAATCCCAGGCACGAGCTTGCGTGCGACGGCAGAAGATGCTGA
AAGGCTAGAACAGCTCCCGCCTCCAAAACGAAGGCACATGTCGAATCGAA
CTTTTGATACCACGATCGATGACAAAGACAAATTGCATACAGCGATTCAT
CGTCAAGAGAAAAAGAAGAAACCCAAGAAGAAGAGATTACCCAAGAACTT
CGACCCAGATGGCCCTCCACCCGACCCAGAGAGGTGGCTGCCGAAAACAC
TACGGTCGGGTTACAGAAAGAAGAAAGCAAAAAGAGATCAAGCACCTTTC
CGAGGTTCCCAAGGAGCTGATGCAACATCAGCTGAAGCTGCTGCTCAAAA
CATGGGCGACAAGGCTGCGTCTAAGGCCTCGTCTGCTCAGGCCAATGCCT
TGCCACCACGAAGTCGACCACGAATGCAAAGAAGGAAGAAAGGTCGGAAG
TAG