Ggra6854.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6854.t1
Unique NameGgra6854.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length199
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:679279..680159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45351.EDO34613
Preferred namePPIB
PFAMsPro_isomerase
Max annot lvl33208|Metazoa
KEGG koko:K03768
GOsGO:0000413,GO:0001501,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005788,GO:0005790,GO:0006457,GO:0006464,GO:0006807,GO:0006810,GO:0007275,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0016018,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0019899,GO:0031647,GO:0031974,GO:0032501,GO:0032502,GO:0032991,GO:0033218,GO:0034663,GO:0035821,GO:0036211,GO:0040008,GO:0040014,GO:0040018,GO:0042277,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043900,GO:0043902,GO:0043903,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044403,GO:0044419,GO:0044421,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044788,GO:0044794,GO:0044827,GO:0044829,GO:0044877,GO:0045069,GO:0045070,GO:0045927,GO:0046907,GO:0048471,GO:0048513,GO:0048518,GO:0048524,GO:0048638,GO:0048639,GO:0048731,GO:0048856,GO:0050789,GO:0050792,GO:0050793,GO:0050821,GO:0051082,GO:0051094,GO:0051169,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051641,GO:0051649,GO:0051702,GO:0051704,GO:0051817,GO:0051851,GO:0060348,GO:0061077,GO:0065007,GO:0065008,GO:0070013,GO:0070063,GO:0071704,GO:0140096,GO:1901564,GO:1903900,GO:1903902
Evalue2.3e-76
EggNOG OGsCOG0652@1|root,KOG0880@2759|Eukaryota,38FKT@33154|Opisthokonta,3BCX1@33208|Metazoa
EC5.2.1.8
DescriptionPPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
COG categoryO
BRITEko00000,ko01000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6854Ggra6854Gracilaria gracilis GNS1m malegenetig00000056_pilon 679279..680159 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6854.t1Ggra6854.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 679279..680159 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6854.t1.stop1Ggra6854.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 679279..679281 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6854.t1.CDS1Ggra6854.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 679279..679533 -
Ggra6854.t1.CDS2Ggra6854.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000056_pilon 679613..679692 -
Ggra6854.t1.CDS3Ggra6854.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000056_pilon 679808..679817 -
Ggra6854.t1.CDS4Ggra6854.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000056_pilon 679908..680159 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6854.t1.exon1Ggra6854.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 679279..679533 -
Ggra6854.t1.exon2Ggra6854.t1.exon2Gracilaria gracilis GNS1m maleexontig00000056_pilon 679613..679692 -
Ggra6854.t1.exon3Ggra6854.t1.exon3Gracilaria gracilis GNS1m maleexontig00000056_pilon 679808..679817 -
Ggra6854.t1.exon4Ggra6854.t1.exon4Gracilaria gracilis GNS1m maleexontig00000056_pilon 679908..680159 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6854.t1.intron1Ggra6854.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000056_pilon 679534..679612 -
Ggra6854.t1.intron2Ggra6854.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000056_pilon 679693..679807 -
Ggra6854.t1.intron3Ggra6854.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000056_pilon 679818..679907 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6854.t1.start1Ggra6854.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 680157..680159 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6854.t1 ID=Ggra6854.t1|Name=Ggra6854.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=199bp
MAFLHLATVLAAFFLSVSATQSGKVTDHVFFDMSIGGEPAGRMVFGLFGE
TVPKTAKNFKHLALHTEGYGYKNSIFHRVIPGFMAQGGDFENSDGTGGKS
IYGAKFDDENFSLQHVGRGVLSMANAGPNTNGAQFFVTFKDTPWLDGRHV
VFGKIISGHDVLDRMEKLSMGPMDRPKEKVTVADCGTIDLDAPYEVSF*
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spliced messenger RNA

>Ggra6854.t1 ID=Ggra6854.t1|Name=Ggra6854.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=597bp|location=Sequence derived from alignment at tig00000056_pilon:679279..680159- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTTCTTCACCTCGCCACCGTCCTCGCCGCCTTCTTCCTCTCCGT
CAGCGCCACACAATCGGGCAAGGTCACGGACCATGTCTTCTTCGACATGT
CCATCGGCGGTGAGCCCGCTGGCCGCATGGTGTTCGGTCTCTTTGGTGAA
ACCGTCCCCAAGACCGCCAAGAACTTCAAGCACCTAGCGCTTCACACCGA
GGGATATGGCTACAAGAACAGCATCTTCCACCGAGTTATTCCTGGCTTTA
TGGCCCAAGGAGGCGACTTCGAGAACAGCGATGGTACGGGTGGAAAGTCT
ATCTATGGCGCCAAATTTGATGATGAGAATTTCAGCTTGCAACACGTAGG
ACGCGGCGTGCTGTCTATGGCCAACGCCGGCCCAAACACCAACGGCGCTC
AATTTTTTGTTACCTTCAAGGACACTCCATGGTTAGATGGCCGTCATGTA
GTGTTCGGCAAGATCATTTCAGGGCATGATGTGCTTGATCGCATGGAGAA
GTTAAGTATGGGACCAATGGATCGTCCGAAGGAGAAGGTCACCGTTGCAG
ATTGTGGAACCATCGACTTGGATGCTCCGTACGAAGTAAGCTTTTAG
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protein sequence of Ggra6854.t1

>Ggra6854.t1 ID=Ggra6854.t1|Name=Ggra6854.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=199bp
MAFLHLATVLAAFFLSVSATQSGKVTDHVFFDMSIGGEPAGRMVFGLFGE
TVPKTAKNFKHLALHTEGYGYKNSIFHRVIPGFMAQGGDFENSDGTGGKS
IYGAKFDDENFSLQHVGRGVLSMANAGPNTNGAQFFVTFKDTPWLDGRHV
VFGKIISGHDVLDRMEKLSMGPMDRPKEKVTVADCGTIDLDAPYEVSF*
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mRNA from alignment at tig00000056_pilon:679279..680159-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6854.t1 ID=Ggra6854.t1|Name=Ggra6854.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=881bp|location=Sequence derived from alignment at tig00000056_pilon:679279..680159- (Gracilaria gracilis GNS1m male)
ATGGCTTTTCTTCACCTCGCCACCGTCCTCGCCGCCTTCTTCCTCTCCGT
CAGCGCCACACAATCGGGCAAGGTCACGGACCATGTCTTCTTCGACATGT
CCATCGGCGGTGAGCCCGCTGGCCGCATGGTGTTCGGTCTCTTTGGTGAA
ACCGTCCCCAAGACCGCCAAGAACTTCAAGCACCTAGCGCTTCACACCGA
GGGATATGGCTACAAGAACAGCATCTTCCACCGAGTTATTCCTGGCTTTA
TGGTGCGTATCTGGCTCACCCTTTCCCTGTTCGCATACTCACTCTGACTG
ACACCGCTTTCGTGTTTTCAAATCAACCATCCTTTGAACCAGGCCCAAGG
AGGTATGCCACACACATTTGTTCCAATCTCGAGTACAAGGGTATGTGTAC
CAGGTCTCGAGATTGCTCTTCTGACCCTCTTTGATCTCCTCTGCCTTTTC
CCGCGCTTCCTGATTAGGCGACTTCGAGAACAGCGATGGTACGGGTGGAA
AGTCTATCTATGGCGCCAAATTTGATGATGAGAATTTCAGCTTGCAAGTA
CGTACGCCACCCCTTTTGTTCCTCCACTAAGCTCCTTGCCGAAACTTACC
GCAGTTAATTATACCAATCTCTACAGCACGTAGGACGCGGCGTGCTGTCT
ATGGCCAACGCCGGCCCAAACACCAACGGCGCTCAATTTTTTGTTACCTT
CAAGGACACTCCATGGTTAGATGGCCGTCATGTAGTGTTCGGCAAGATCA
TTTCAGGGCATGATGTGCTTGATCGCATGGAGAAGTTAAGTATGGGACCA
ATGGATCGTCCGAAGGAGAAGGTCACCGTTGCAGATTGTGGAACCATCGA
CTTGGATGCTCCGTACGAAGTAAGCTTTTAG
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Coding sequence (CDS) from alignment at tig00000056_pilon:679279..680159-

>Ggra6854.t1 ID=Ggra6854.t1|Name=Ggra6854.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=597bp|location=Sequence derived from alignment at tig00000056_pilon:679279..680159- (Gracilaria gracilis GNS1m male)
ATGGCTTTTCTTCACCTCGCCACCGTCCTCGCCGCCTTCTTCCTCTCCGT
CAGCGCCACACAATCGGGCAAGGTCACGGACCATGTCTTCTTCGACATGT
CCATCGGCGGTGAGCCCGCTGGCCGCATGGTGTTCGGTCTCTTTGGTGAA
ACCGTCCCCAAGACCGCCAAGAACTTCAAGCACCTAGCGCTTCACACCGA
GGGATATGGCTACAAGAACAGCATCTTCCACCGAGTTATTCCTGGCTTTA
TGGCCCAAGGAGGCGACTTCGAGAACAGCGATGGTACGGGTGGAAAGTCT
ATCTATGGCGCCAAATTTGATGATGAGAATTTCAGCTTGCAACACGTAGG
ACGCGGCGTGCTGTCTATGGCCAACGCCGGCCCAAACACCAACGGCGCTC
AATTTTTTGTTACCTTCAAGGACACTCCATGGTTAGATGGCCGTCATGTA
GTGTTCGGCAAGATCATTTCAGGGCATGATGTGCTTGATCGCATGGAGAA
GTTAAGTATGGGACCAATGGATCGTCCGAAGGAGAAGGTCACCGTTGCAG
ATTGTGGAACCATCGACTTGGATGCTCCGTACGAAGTAAGCTTTTAG
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