Ggra6852.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6852.t1
Unique NameGgra6852.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length475
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:670717..672307 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708336.1
Max annot lvl130081.XP_005708336.1|-
KEGG koko:K15378
KEGG TC2.A.2.4,2.A.2.6
Evalue3.98e-39
EggNOG OGsKOG0637@1|root,KOG0637@2759|Eukaryota
Descriptionsucrose transmembrane transporter activity
COG categoryS
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6852Ggra6852Gracilaria gracilis GNS1m malegenetig00000056_pilon 670717..672307 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6852.t1Ggra6852.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 670717..672307 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6852.t1.stop1Ggra6852.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 670717..670719 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6852.t1.CDS1Ggra6852.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 670717..670831 -
Ggra6852.t1.CDS2Ggra6852.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000056_pilon 670915..671293 -
Ggra6852.t1.CDS3Ggra6852.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000056_pilon 671377..672307 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6852.t1.exon1Ggra6852.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 670717..670831 -
Ggra6852.t1.exon2Ggra6852.t1.exon2Gracilaria gracilis GNS1m maleexontig00000056_pilon 670915..671293 -
Ggra6852.t1.exon3Ggra6852.t1.exon3Gracilaria gracilis GNS1m maleexontig00000056_pilon 671377..672307 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6852.t1.intron1Ggra6852.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000056_pilon 670832..670914 -
Ggra6852.t1.intron2Ggra6852.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000056_pilon 671294..671376 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6852.t1.start1Ggra6852.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 672305..672307 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6852.t1 ID=Ggra6852.t1|Name=Ggra6852.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=475bp
MGTVDVDASYKPLPADDEEQPPHASDALEAARLCDEADQCAQRPRASWAY
IYLLCVANFGISGAWALEFATVTPFFEAGLNAGDFISHMVWIVGPLSGLI
VAPIVGALSDTCTSSLGRRRPFIIVGMLATVFGMLTFSNALQIAALFTAN
GSSAHHVASCVIAIVAFCVLDLAINTTMWPVRALQADLLPHYEQHRVQSA
AVVVGSLGDLAANALVDSYKKPVSHIRPCYFLAALLYSSTVMLLLVLGKE
KPLEHVDQTASQARSFNILSYLRSLPGWMWRIGGTYALGFFMLFCTMPNL
SSWLGASVLGGDPKAPQGSEGEATYERGVSIYGKASLVRALVQIAFSAVY
PFLLRFVSAGKLMGLCFGAFGILLAIFSGTKSLLVGQIIVIMLAFPEAAH
FTLPTGLTVEYSDDSNRGKYLGALNCFAVIPQLIDTAYTGWVSDRFGEAA
VMRIGAVWGILTGISGFVFMTVGG*
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spliced messenger RNA

>Ggra6852.t1 ID=Ggra6852.t1|Name=Ggra6852.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1425bp|location=Sequence derived from alignment at tig00000056_pilon:670717..672307- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCACCGTCGATGTGGATGCGTCCTACAAGCCGCTGCCTGCGGACGA
TGAGGAGCAGCCGCCACATGCTTCCGACGCGCTCGAGGCGGCGCGCCTAT
GCGATGAGGCCGACCAATGCGCGCAGCGTCCACGCGCTTCTTGGGCGTAC
ATCTACCTGTTGTGCGTCGCCAACTTCGGCATCAGCGGCGCGTGGGCGCT
GGAGTTTGCCACCGTCACGCCCTTCTTCGAGGCCGGTTTGAACGCGGGCG
ACTTCATCAGCCACATGGTGTGGATCGTCGGTCCGTTATCCGGGCTCATA
GTCGCGCCCATTGTGGGCGCCCTGTCCGATACGTGCACGTCGTCGCTTGG
GAGACGCCGCCCCTTTATCATTGTTGGCATGCTTGCCACCGTGTTTGGCA
TGCTCACCTTTTCTAACGCCCTGCAGATTGCGGCGCTTTTCACCGCCAAC
GGCTCTTCGGCGCATCATGTCGCCAGCTGCGTCATTGCTATTGTCGCCTT
CTGCGTGCTTGACCTCGCCATTAACACCACCATGTGGCCGGTGCGCGCGT
TGCAGGCAGACTTATTGCCGCACTATGAGCAGCATCGCGTGCAGAGTGCC
GCTGTCGTTGTGGGCTCCTTGGGCGATCTGGCTGCCAATGCTTTGGTCGA
TTCTTATAAGAAACCAGTTTCCCACATTCGCCCCTGCTACTTTCTGGCCG
CTTTACTATACTCGTCCACTGTCATGCTTCTGTTAGTGCTTGGAAAGGAA
AAGCCGCTGGAACACGTCGATCAAACTGCCTCGCAAGCGCGCTCGTTCAA
CATCCTCAGCTATCTCAGGTCGCTGCCTGGCTGGATGTGGCGCATTGGCG
GCACGTACGCTTTGGGATTCTTCATGTTGTTTTGCACCATGCCCAACCTG
TCTAGCTGGTTGGGCGCTTCAGTTCTTGGCGGCGATCCAAAAGCTCCACA
AGGCTCGGAAGGCGAAGCTACCTACGAACGAGGTGTCAGCATTTACGGCA
AGGCTAGTCTTGTTCGCGCGCTCGTGCAGATTGCTTTCTCTGCCGTGTAT
CCATTTCTGCTGCGTTTCGTAAGTGCGGGCAAGTTGATGGGTCTTTGTTT
CGGCGCGTTTGGCATTCTGTTGGCCATCTTTAGTGGTACAAAATCTTTGT
TGGTTGGGCAGATTATTGTGATAATGCTTGCTTTTCCAGAAGCTGCTCAT
TTTACGTTACCGACTGGTCTTACCGTCGAGTACTCGGACGATTCGAATCG
AGGCAAGTACCTCGGCGCTCTCAACTGCTTTGCAGTGATTCCGCAGCTTA
TTGATACGGCGTATACCGGCTGGGTGAGTGACAGATTTGGAGAGGCTGCT
GTGATGAGAATAGGTGCCGTATGGGGCATTTTGACTGGCATCAGTGGCTT
TGTGTTTATGACAGTCGGAGGATGA
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protein sequence of Ggra6852.t1

>Ggra6852.t1 ID=Ggra6852.t1|Name=Ggra6852.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=475bp
MGTVDVDASYKPLPADDEEQPPHASDALEAARLCDEADQCAQRPRASWAY
IYLLCVANFGISGAWALEFATVTPFFEAGLNAGDFISHMVWIVGPLSGLI
VAPIVGALSDTCTSSLGRRRPFIIVGMLATVFGMLTFSNALQIAALFTAN
GSSAHHVASCVIAIVAFCVLDLAINTTMWPVRALQADLLPHYEQHRVQSA
AVVVGSLGDLAANALVDSYKKPVSHIRPCYFLAALLYSSTVMLLLVLGKE
KPLEHVDQTASQARSFNILSYLRSLPGWMWRIGGTYALGFFMLFCTMPNL
SSWLGASVLGGDPKAPQGSEGEATYERGVSIYGKASLVRALVQIAFSAVY
PFLLRFVSAGKLMGLCFGAFGILLAIFSGTKSLLVGQIIVIMLAFPEAAH
FTLPTGLTVEYSDDSNRGKYLGALNCFAVIPQLIDTAYTGWVSDRFGEAA
VMRIGAVWGILTGISGFVFMTVGG*
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mRNA from alignment at tig00000056_pilon:670717..672307-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6852.t1 ID=Ggra6852.t1|Name=Ggra6852.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1591bp|location=Sequence derived from alignment at tig00000056_pilon:670717..672307- (Gracilaria gracilis GNS1m male)
ATGGGCACCGTCGATGTGGATGCGTCCTACAAGCCGCTGCCTGCGGACGA
TGAGGAGCAGCCGCCACATGCTTCCGACGCGCTCGAGGCGGCGCGCCTAT
GCGATGAGGCCGACCAATGCGCGCAGCGTCCACGCGCTTCTTGGGCGTAC
ATCTACCTGTTGTGCGTCGCCAACTTCGGCATCAGCGGCGCGTGGGCGCT
GGAGTTTGCCACCGTCACGCCCTTCTTCGAGGCCGGTTTGAACGCGGGCG
ACTTCATCAGCCACATGGTGTGGATCGTCGGTCCGTTATCCGGGCTCATA
GTCGCGCCCATTGTGGGCGCCCTGTCCGATACGTGCACGTCGTCGCTTGG
GAGACGCCGCCCCTTTATCATTGTTGGCATGCTTGCCACCGTGTTTGGCA
TGCTCACCTTTTCTAACGCCCTGCAGATTGCGGCGCTTTTCACCGCCAAC
GGCTCTTCGGCGCATCATGTCGCCAGCTGCGTCATTGCTATTGTCGCCTT
CTGCGTGCTTGACCTCGCCATTAACACCACCATGTGGCCGGTGCGCGCGT
TGCAGGCAGACTTATTGCCGCACTATGAGCAGCATCGCGTGCAGAGTGCC
GCTGTCGTTGTGGGCTCCTTGGGCGATCTGGCTGCCAATGCTTTGGTCGA
TTCTTATAAGAAACCAGTTTCCCACATTCGCCCCTGCTACTTTCTGGCCG
CTTTACTATACTCGTCCACTGTCATGCTTCTGTTAGTGCTTGGAAAGGAA
AAGCCGCTGGAACACGTCGATCAAACTGCCTCGCAAGCGCGCTCGTTCAA
CATCCTCAGCTATCTCAGGTCGCTGCCTGGCTGGATGTGGCGCATTGGCG
GCACGTACGCTTTGGGATTCTTCATGTTGTTTTGCACCATGCCCAACCTG
TCTAGCTGGTTGGGCGCTTCAGTTCTTGGCGGTATGTCACAAAAAAATTC
TCTCTCCTCTCTGCAATTCATATTCTCACACACTTATGCTACCATCTGCG
TTTACCGTTCACAGGCGATCCAAAAGCTCCACAAGGCTCGGAAGGCGAAG
CTACCTACGAACGAGGTGTCAGCATTTACGGCAAGGCTAGTCTTGTTCGC
GCGCTCGTGCAGATTGCTTTCTCTGCCGTGTATCCATTTCTGCTGCGTTT
CGTAAGTGCGGGCAAGTTGATGGGTCTTTGTTTCGGCGCGTTTGGCATTC
TGTTGGCCATCTTTAGTGGTACAAAATCTTTGTTGGTTGGGCAGATTATT
GTGATAATGCTTGCTTTTCCAGAAGCTGCTCATTTTACGTTACCGACTGG
TCTTACCGTCGAGTACTCGGACGATTCGAATCGAGGCAAGTACCTCGGCG
CTCTCAACTGCTTTGCAGTGATTCCGCAGCTTATTGATACGGCGTAAGTT
GATGTTTTGGGCGTTCATCGTGTCTCCGCACTTCTGCATCACGTTGCTAA
CAGTTTAATTCTCTTTTCAACAACAGGTATACCGGCTGGGTGAGTGACAG
ATTTGGAGAGGCTGCTGTGATGAGAATAGGTGCCGTATGGGGCATTTTGA
CTGGCATCAGTGGCTTTGTGTTTATGACAGTCGGAGGATGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:670717..672307-

>Ggra6852.t1 ID=Ggra6852.t1|Name=Ggra6852.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1425bp|location=Sequence derived from alignment at tig00000056_pilon:670717..672307- (Gracilaria gracilis GNS1m male)
ATGGGCACCGTCGATGTGGATGCGTCCTACAAGCCGCTGCCTGCGGACGA
TGAGGAGCAGCCGCCACATGCTTCCGACGCGCTCGAGGCGGCGCGCCTAT
GCGATGAGGCCGACCAATGCGCGCAGCGTCCACGCGCTTCTTGGGCGTAC
ATCTACCTGTTGTGCGTCGCCAACTTCGGCATCAGCGGCGCGTGGGCGCT
GGAGTTTGCCACCGTCACGCCCTTCTTCGAGGCCGGTTTGAACGCGGGCG
ACTTCATCAGCCACATGGTGTGGATCGTCGGTCCGTTATCCGGGCTCATA
GTCGCGCCCATTGTGGGCGCCCTGTCCGATACGTGCACGTCGTCGCTTGG
GAGACGCCGCCCCTTTATCATTGTTGGCATGCTTGCCACCGTGTTTGGCA
TGCTCACCTTTTCTAACGCCCTGCAGATTGCGGCGCTTTTCACCGCCAAC
GGCTCTTCGGCGCATCATGTCGCCAGCTGCGTCATTGCTATTGTCGCCTT
CTGCGTGCTTGACCTCGCCATTAACACCACCATGTGGCCGGTGCGCGCGT
TGCAGGCAGACTTATTGCCGCACTATGAGCAGCATCGCGTGCAGAGTGCC
GCTGTCGTTGTGGGCTCCTTGGGCGATCTGGCTGCCAATGCTTTGGTCGA
TTCTTATAAGAAACCAGTTTCCCACATTCGCCCCTGCTACTTTCTGGCCG
CTTTACTATACTCGTCCACTGTCATGCTTCTGTTAGTGCTTGGAAAGGAA
AAGCCGCTGGAACACGTCGATCAAACTGCCTCGCAAGCGCGCTCGTTCAA
CATCCTCAGCTATCTCAGGTCGCTGCCTGGCTGGATGTGGCGCATTGGCG
GCACGTACGCTTTGGGATTCTTCATGTTGTTTTGCACCATGCCCAACCTG
TCTAGCTGGTTGGGCGCTTCAGTTCTTGGCGGCGATCCAAAAGCTCCACA
AGGCTCGGAAGGCGAAGCTACCTACGAACGAGGTGTCAGCATTTACGGCA
AGGCTAGTCTTGTTCGCGCGCTCGTGCAGATTGCTTTCTCTGCCGTGTAT
CCATTTCTGCTGCGTTTCGTAAGTGCGGGCAAGTTGATGGGTCTTTGTTT
CGGCGCGTTTGGCATTCTGTTGGCCATCTTTAGTGGTACAAAATCTTTGT
TGGTTGGGCAGATTATTGTGATAATGCTTGCTTTTCCAGAAGCTGCTCAT
TTTACGTTACCGACTGGTCTTACCGTCGAGTACTCGGACGATTCGAATCG
AGGCAAGTACCTCGGCGCTCTCAACTGCTTTGCAGTGATTCCGCAGCTTA
TTGATACGGCGTATACCGGCTGGGTGAGTGACAGATTTGGAGAGGCTGCT
GTGATGAGAATAGGTGCCGTATGGGGCATTTTGACTGGCATCAGTGGCTT
TGTGTTTATGACAGTCGGAGGATGA
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