Ggra6848.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6848.t1
Unique NameGgra6848.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length315
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:665697..666641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog85929.N1QD97
PFAMsPI31_Prot_C,PI31_Prot_N
Max annot lvl4751|Fungi
GOsGO:0003674,GO:0004857,GO:0004866,GO:0005488,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010466,GO:0010498,GO:0010605,GO:0010951,GO:0019222,GO:0019538,GO:0019941,GO:0030162,GO:0030163,GO:0030234,GO:0030414,GO:0031323,GO:0031324,GO:0032268,GO:0032269,GO:0043086,GO:0043161,GO:0043170,GO:0043632,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044877,GO:0045861,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051336,GO:0051346,GO:0051603,GO:0052547,GO:0052548,GO:0060255,GO:0061134,GO:0061135,GO:0065007,GO:0065009,GO:0070628,GO:0071704,GO:0080090,GO:0098772,GO:1901564,GO:1901565,GO:1901575
Evalue2.02e-11
EggNOG OGs2ARJV@1|root,2RZMJ@2759|Eukaryota,38WYE@33154|Opisthokonta,3NUWQ@4751|Fungi,3QRN8@4890|Ascomycota,1ZZHJ@147541|Dothideomycetes,3MHB9@451867|Dothideomycetidae
DescriptionPI31 proteasome regulator
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6848Ggra6848Gracilaria gracilis GNS1m malegenetig00000056_pilon 665697..666641 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6848.t1.stop1Ggra6848.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 665697..665699 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6848.t1.CDS1Ggra6848.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 665697..666641 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6848.t1.exon1Ggra6848.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 665697..666641 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6848.t1.start1Ggra6848.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 666639..666641 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6848.t1Ggra6848.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 665697..666641 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6848.t1 ID=Ggra6848.t1|Name=Ggra6848.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=315bp
MSSEQQQDAVSRAKRWLQARDVPRNNAHESVALTVHALLLAHGFRADGAS
DHKQLPSVWTDGAYGGLYRHQRSAMKFDIRASRVGRKLVWNATAVEDDAT
VHTLQLDVARYADASAEDWLGALRHSDELATLVAVKLAHQLVPDSAKEGY
EAAAAAGGASSGADAQTNGAAPQRVEVPIPVPVPVPVPVGEHDHDPLRIG
APRNPLYPPLGVAPLGGDDLLPPGLPPSFGPGGVGGGAARLPGGNLMGPA
HFGRGRGWRPPGVPPGARFDPFLPQPDNDAELPPGFDDEHALRGPPRTGG
APRGRGGAPPDMFF*
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spliced messenger RNA

>Ggra6848.t1 ID=Ggra6848.t1|Name=Ggra6848.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=945bp|location=Sequence derived from alignment at tig00000056_pilon:665697..666641- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCGGAGCAGCAACAAGACGCCGTCTCGCGCGCCAAGCGCTGGCT
GCAGGCGCGCGACGTACCGCGAAACAACGCGCATGAGAGCGTGGCGCTCA
CCGTACACGCGCTGCTGCTGGCGCACGGCTTCCGCGCCGACGGCGCGTCT
GACCACAAGCAACTGCCAAGCGTGTGGACGGACGGCGCGTATGGCGGGCT
GTATCGGCACCAACGCTCCGCTATGAAGTTCGACATTCGCGCGTCCAGAG
TTGGACGCAAGCTGGTGTGGAACGCCACCGCCGTGGAGGATGACGCCACC
GTACACACGCTGCAGCTGGACGTGGCGCGGTACGCTGATGCGAGCGCTGA
AGATTGGCTTGGCGCGCTGCGCCATAGCGATGAGCTGGCGACGCTGGTGG
CGGTCAAACTGGCGCACCAGCTGGTACCAGACTCTGCCAAAGAAGGCTAC
GAGGCGGCTGCGGCCGCCGGCGGCGCCTCGTCCGGCGCGGACGCACAAAC
AAACGGCGCGGCGCCGCAGCGCGTGGAGGTACCGATTCCTGTACCCGTGC
CGGTGCCAGTGCCGGTGGGCGAGCACGACCACGACCCGCTTCGCATCGGC
GCGCCTCGCAACCCGCTGTACCCCCCACTGGGCGTGGCGCCGCTGGGCGG
CGACGACCTGCTGCCGCCCGGGCTGCCGCCGTCGTTCGGACCAGGCGGCG
TGGGCGGCGGCGCGGCGCGACTGCCCGGCGGCAACCTGATGGGGCCCGCG
CACTTTGGACGCGGGCGCGGATGGCGTCCGCCAGGCGTTCCGCCCGGCGC
GCGCTTCGACCCGTTCCTGCCGCAGCCCGACAACGACGCCGAGCTGCCGC
CCGGCTTTGACGACGAACACGCGCTGAGAGGCCCACCGCGCACGGGCGGC
GCGCCGCGCGGACGTGGCGGCGCGCCGCCGGACATGTTCTTCTGA
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protein sequence of Ggra6848.t1

>Ggra6848.t1 ID=Ggra6848.t1|Name=Ggra6848.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=315bp
MSSEQQQDAVSRAKRWLQARDVPRNNAHESVALTVHALLLAHGFRADGAS
DHKQLPSVWTDGAYGGLYRHQRSAMKFDIRASRVGRKLVWNATAVEDDAT
VHTLQLDVARYADASAEDWLGALRHSDELATLVAVKLAHQLVPDSAKEGY
EAAAAAGGASSGADAQTNGAAPQRVEVPIPVPVPVPVPVGEHDHDPLRIG
APRNPLYPPLGVAPLGGDDLLPPGLPPSFGPGGVGGGAARLPGGNLMGPA
HFGRGRGWRPPGVPPGARFDPFLPQPDNDAELPPGFDDEHALRGPPRTGG
APRGRGGAPPDMFF*
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mRNA from alignment at tig00000056_pilon:665697..666641-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6848.t1 ID=Ggra6848.t1|Name=Ggra6848.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=945bp|location=Sequence derived from alignment at tig00000056_pilon:665697..666641- (Gracilaria gracilis GNS1m male)
ATGTCGTCGGAGCAGCAACAAGACGCCGTCTCGCGCGCCAAGCGCTGGCT
GCAGGCGCGCGACGTACCGCGAAACAACGCGCATGAGAGCGTGGCGCTCA
CCGTACACGCGCTGCTGCTGGCGCACGGCTTCCGCGCCGACGGCGCGTCT
GACCACAAGCAACTGCCAAGCGTGTGGACGGACGGCGCGTATGGCGGGCT
GTATCGGCACCAACGCTCCGCTATGAAGTTCGACATTCGCGCGTCCAGAG
TTGGACGCAAGCTGGTGTGGAACGCCACCGCCGTGGAGGATGACGCCACC
GTACACACGCTGCAGCTGGACGTGGCGCGGTACGCTGATGCGAGCGCTGA
AGATTGGCTTGGCGCGCTGCGCCATAGCGATGAGCTGGCGACGCTGGTGG
CGGTCAAACTGGCGCACCAGCTGGTACCAGACTCTGCCAAAGAAGGCTAC
GAGGCGGCTGCGGCCGCCGGCGGCGCCTCGTCCGGCGCGGACGCACAAAC
AAACGGCGCGGCGCCGCAGCGCGTGGAGGTACCGATTCCTGTACCCGTGC
CGGTGCCAGTGCCGGTGGGCGAGCACGACCACGACCCGCTTCGCATCGGC
GCGCCTCGCAACCCGCTGTACCCCCCACTGGGCGTGGCGCCGCTGGGCGG
CGACGACCTGCTGCCGCCCGGGCTGCCGCCGTCGTTCGGACCAGGCGGCG
TGGGCGGCGGCGCGGCGCGACTGCCCGGCGGCAACCTGATGGGGCCCGCG
CACTTTGGACGCGGGCGCGGATGGCGTCCGCCAGGCGTTCCGCCCGGCGC
GCGCTTCGACCCGTTCCTGCCGCAGCCCGACAACGACGCCGAGCTGCCGC
CCGGCTTTGACGACGAACACGCGCTGAGAGGCCCACCGCGCACGGGCGGC
GCGCCGCGCGGACGTGGCGGCGCGCCGCCGGACATGTTCTTCTGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:665697..666641-

>Ggra6848.t1 ID=Ggra6848.t1|Name=Ggra6848.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=945bp|location=Sequence derived from alignment at tig00000056_pilon:665697..666641- (Gracilaria gracilis GNS1m male)
ATGTCGTCGGAGCAGCAACAAGACGCCGTCTCGCGCGCCAAGCGCTGGCT
GCAGGCGCGCGACGTACCGCGAAACAACGCGCATGAGAGCGTGGCGCTCA
CCGTACACGCGCTGCTGCTGGCGCACGGCTTCCGCGCCGACGGCGCGTCT
GACCACAAGCAACTGCCAAGCGTGTGGACGGACGGCGCGTATGGCGGGCT
GTATCGGCACCAACGCTCCGCTATGAAGTTCGACATTCGCGCGTCCAGAG
TTGGACGCAAGCTGGTGTGGAACGCCACCGCCGTGGAGGATGACGCCACC
GTACACACGCTGCAGCTGGACGTGGCGCGGTACGCTGATGCGAGCGCTGA
AGATTGGCTTGGCGCGCTGCGCCATAGCGATGAGCTGGCGACGCTGGTGG
CGGTCAAACTGGCGCACCAGCTGGTACCAGACTCTGCCAAAGAAGGCTAC
GAGGCGGCTGCGGCCGCCGGCGGCGCCTCGTCCGGCGCGGACGCACAAAC
AAACGGCGCGGCGCCGCAGCGCGTGGAGGTACCGATTCCTGTACCCGTGC
CGGTGCCAGTGCCGGTGGGCGAGCACGACCACGACCCGCTTCGCATCGGC
GCGCCTCGCAACCCGCTGTACCCCCCACTGGGCGTGGCGCCGCTGGGCGG
CGACGACCTGCTGCCGCCCGGGCTGCCGCCGTCGTTCGGACCAGGCGGCG
TGGGCGGCGGCGCGGCGCGACTGCCCGGCGGCAACCTGATGGGGCCCGCG
CACTTTGGACGCGGGCGCGGATGGCGTCCGCCAGGCGTTCCGCCCGGCGC
GCGCTTCGACCCGTTCCTGCCGCAGCCCGACAACGACGCCGAGCTGCCGC
CCGGCTTTGACGACGAACACGCGCTGAGAGGCCCACCGCGCACGGGCGGC
GCGCCGCGCGGACGTGGCGGCGCGCCGCCGGACATGTTCTTCTGA
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