Ggra6847.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6847.t1
Unique Name	Ggra6847.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	597

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:662695..664485 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7460.GB42534-PA
Preferred name	CAMKK2
PFAMs	Pkinase
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K00908,ko:K05215,ko:K07359
KEGG TC	1.A.7.1.1
KEGG Pathway	ko04020,ko04080,ko04140,ko04152,ko04211,ko04611,ko04920,ko04921,ko05034,map04020,map04080,map04140,map04152,map04211,map04611,map04920,map04921,map05034
GOs	GO:0000165,GO:0000302,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0004713,GO:0005488,GO:0005509,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0008047,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010467,GO:0010468,GO:0010506,GO:0010508,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0010638,GO:0010821,GO:0010822,GO:0016070,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018107,GO:0018108,GO:0018130,GO:0018193,GO:0018209,GO:0018210,GO:0018212,GO:0019207,GO:0019209,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019722,GO:0019887,GO:0019932,GO:0023014,GO:0023052,GO:0030234,GO:0030295,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031399,GO:0031401,GO:0032147,GO:0032268,GO:0032270,GO:0032774,GO:0032793,GO:0033043,GO:0033554,GO:0033674,GO:0034599,GO:0034614,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0036211,GO:0042221,GO:0042325,GO:0042327,GO:0042995,GO:0043085,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045859,GO:0045860,GO:0045893,GO:0045935,GO:0045937,GO:0046483,GO:0046777,GO:0046872,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051090,GO:0051091,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051716,GO:0060255,GO:0061762,GO:0065007,GO:0065009,GO:0070887,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0098772,GO:0099004,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901700,GO:1901701,GO:1902680,GO:1903146,GO:1903506,GO:1903508,GO:1903599,GO:2000112,GO:2001141
Evalue	2.91e-38
EggNOG OGs	KOG0585@1\|root,KOG0585@2759\|Eukaryota,38C0I@33154\|Opisthokonta,3BB86@33208\|Metazoa,3CUWI@33213\|Bilateria,41Y37@6656\|Arthropoda,3SHUC@50557\|Insecta,46K6D@7399\|Hymenoptera
EC	2.7.11.17
Description	Serine/Threonine protein kinases, catalytic domain
COG category	T
BRITE	ko00000,ko00001,ko01000,ko01001,ko04040

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6847	Ggra6847	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 662695..664485 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6847.t1.stop1	Ggra6847.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 662695..662697 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6847.t1.CDS1	Ggra6847.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 662695..664485 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6847.t1.exon1	Ggra6847.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 662695..664485 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6847.t1.start1	Ggra6847.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 664483..664485 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6847.t1	Ggra6847.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 662695..664485 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:662695..664485-
coding sequence from alignment at tig00000056_pilon:662695..664485-

mRNA sequence

>Ggra6847.t1 ID=Ggra6847.t1|Name=Ggra6847.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=597bp
MHPPPSHPASSRAHSLPGSDSSQNSEQPQLPEVPSAVDVVRQNSNFSRLS
AQSWLTVDSAHELDADPPSANASPARPPPPPPPPPASPPASPDKARPSPP
VSVPLYHGSFSDAGDHVPSQLFAIDVHCSLLQRLRTRPYSSLSVLECCAL
LQEGVAALKKKNFLRFGARRVWLNTSCDRLMWTSKKAGVPANHVKVHQVA
RIKCADREVCIDLIEGRRISLLFANADEAALWVKALSCLVPLQARIIAPS
VVIPPEKEREEFTLSHDMFNGRSLREHVGIGNYVLLCSAKDHPAANGHKV
VFARSDSSFCTLRYVPRKLVPLLLRSQEEIAVLKRLKHPNIVQYHECLLD
QQHGGTYLTFEYLARGTLIDGSKLEGVEPIHEHSARELITDVVNGLEYLH
RLRIAHADVRPDNLLRSVDGRVKLNPIGCITHDFTEIKNLTTLVKTRLGD
ASPAFLAPELCWLCDAPPAHPKSYAMDVWAVGVVLYFMLYGRVPFGGRDD
QEIQTAICTRKLRFPRHPETSKKVRSLLKGVLGEKDPKTRIGLSELKRHP
WFAEGESEPSNASASASNQLIRLTVPQEEIYYAVQRAKITGSPEKS*

spliced messenger RNA

>Ggra6847.t1 ID=Ggra6847.t1|Name=Ggra6847.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1791bp|location=Sequence derived from alignment at tig00000056_pilon:662695..664485- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCCACCGCCGTCGCACCCCGCCTCCTCGCGCGCGCACTCGCTGCC
GGGCTCGGACTCCTCGCAGAACAGCGAGCAGCCGCAGCTGCCGGAGGTGC
CGTCCGCCGTGGACGTTGTGCGACAAAACTCCAACTTCTCGCGCTTGAGC
GCGCAGTCGTGGCTCACCGTCGACTCGGCGCACGAGCTGGATGCAGACCC
GCCTTCCGCCAACGCGTCGCCTGCGCGCCCGCCGCCGCCGCCGCCGCCGC
CGCCCGCGTCGCCGCCCGCGTCGCCGGACAAGGCCAGACCCAGTCCGCCG
GTGTCGGTGCCGCTTTACCACGGCTCGTTTTCGGACGCGGGCGACCATGT
GCCGTCGCAGCTGTTCGCTATTGATGTGCATTGCTCCTTGTTGCAACGGC
TCAGGACGCGCCCTTATAGCAGCTTGTCTGTGCTCGAGTGCTGCGCGTTG
CTGCAGGAGGGCGTGGCCGCGCTGAAGAAGAAGAACTTCTTGCGCTTTGG
CGCCCGCCGCGTCTGGCTCAACACCAGCTGTGATCGCTTGATGTGGACCA
GTAAGAAGGCGGGCGTTCCTGCCAATCATGTCAAGGTTCATCAGGTTGCT
CGCATCAAGTGCGCGGACCGCGAGGTGTGCATTGATCTTATTGAGGGGCG
ACGTATCTCGTTGCTGTTTGCCAACGCCGACGAGGCTGCGCTTTGGGTCA
AGGCGCTTAGTTGTCTTGTTCCGCTGCAGGCGAGGATTATTGCGCCGTCG
GTGGTCATTCCGCCCGAGAAGGAACGGGAAGAGTTTACCTTGTCGCATGA
TATGTTCAATGGACGCTCTTTGAGGGAGCATGTTGGAATTGGTAATTATG
TGCTCTTGTGCTCGGCCAAGGACCACCCGGCTGCCAATGGTCACAAGGTT
GTGTTTGCGCGCTCTGACTCATCGTTCTGTACGCTGAGATACGTGCCGAG
AAAACTTGTGCCGTTGTTGCTGCGCTCTCAGGAAGAGATTGCGGTGTTGA
AACGACTCAAGCACCCGAACATTGTGCAATATCATGAGTGTTTATTGGAT
CAACAGCATGGTGGCACTTACCTGACGTTTGAGTACTTGGCCAGGGGCAC
CTTGATTGATGGTTCCAAGTTGGAGGGTGTTGAACCTATCCACGAACATT
CTGCACGCGAATTGATCACAGATGTGGTTAACGGCCTCGAGTATTTGCAC
AGACTGCGCATTGCTCACGCTGATGTGCGACCGGATAACCTGCTGCGGTC
TGTTGATGGGAGGGTGAAACTGAATCCAATTGGATGTATTACGCATGACT
TCACCGAAATCAAGAACCTTACTACTCTTGTCAAGACCAGATTGGGCGAT
GCATCTCCAGCATTCCTCGCGCCAGAGTTGTGCTGGCTGTGTGATGCGCC
TCCGGCGCACCCCAAGAGTTACGCCATGGATGTTTGGGCCGTCGGCGTCG
TGTTATACTTTATGCTCTATGGACGTGTACCGTTCGGAGGGCGAGACGAC
CAAGAGATTCAGACAGCCATATGCACTCGTAAGCTGAGGTTCCCTCGGCA
CCCGGAAACGTCCAAGAAAGTGCGCAGCCTTCTAAAGGGTGTGCTTGGTG
AAAAGGATCCCAAGACTCGTATTGGATTATCCGAATTGAAGAGACATCCT
TGGTTTGCTGAGGGTGAGTCCGAGCCGTCGAATGCATCGGCGTCTGCTTC
GAATCAGTTGATCAGGTTAACCGTTCCGCAGGAAGAGATTTATTACGCTG
TTCAAAGAGCGAAGATTACTGGATCTCCAGAAAAGTCGTGA

protein sequence of Ggra6847.t1

>Ggra6847.t1 ID=Ggra6847.t1|Name=Ggra6847.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=597bp
MHPPPSHPASSRAHSLPGSDSSQNSEQPQLPEVPSAVDVVRQNSNFSRLS
AQSWLTVDSAHELDADPPSANASPARPPPPPPPPPASPPASPDKARPSPP
VSVPLYHGSFSDAGDHVPSQLFAIDVHCSLLQRLRTRPYSSLSVLECCAL
LQEGVAALKKKNFLRFGARRVWLNTSCDRLMWTSKKAGVPANHVKVHQVA
RIKCADREVCIDLIEGRRISLLFANADEAALWVKALSCLVPLQARIIAPS
VVIPPEKEREEFTLSHDMFNGRSLREHVGIGNYVLLCSAKDHPAANGHKV
VFARSDSSFCTLRYVPRKLVPLLLRSQEEIAVLKRLKHPNIVQYHECLLD
QQHGGTYLTFEYLARGTLIDGSKLEGVEPIHEHSARELITDVVNGLEYLH
RLRIAHADVRPDNLLRSVDGRVKLNPIGCITHDFTEIKNLTTLVKTRLGD
ASPAFLAPELCWLCDAPPAHPKSYAMDVWAVGVVLYFMLYGRVPFGGRDD
QEIQTAICTRKLRFPRHPETSKKVRSLLKGVLGEKDPKTRIGLSELKRHP
WFAEGESEPSNASASASNQLIRLTVPQEEIYYAVQRAKITGSPEKS*

mRNA from alignment at tig00000056_pilon:662695..664485-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6847.t1 ID=Ggra6847.t1|Name=Ggra6847.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1791bp|location=Sequence derived from alignment at tig00000056_pilon:662695..664485- (Gracilaria gracilis GNS1m male)
ATGCACCCACCGCCGTCGCACCCCGCCTCCTCGCGCGCGCACTCGCTGCC
GGGCTCGGACTCCTCGCAGAACAGCGAGCAGCCGCAGCTGCCGGAGGTGC
CGTCCGCCGTGGACGTTGTGCGACAAAACTCCAACTTCTCGCGCTTGAGC
GCGCAGTCGTGGCTCACCGTCGACTCGGCGCACGAGCTGGATGCAGACCC
GCCTTCCGCCAACGCGTCGCCTGCGCGCCCGCCGCCGCCGCCGCCGCCGC
CGCCCGCGTCGCCGCCCGCGTCGCCGGACAAGGCCAGACCCAGTCCGCCG
GTGTCGGTGCCGCTTTACCACGGCTCGTTTTCGGACGCGGGCGACCATGT
GCCGTCGCAGCTGTTCGCTATTGATGTGCATTGCTCCTTGTTGCAACGGC
TCAGGACGCGCCCTTATAGCAGCTTGTCTGTGCTCGAGTGCTGCGCGTTG
CTGCAGGAGGGCGTGGCCGCGCTGAAGAAGAAGAACTTCTTGCGCTTTGG
CGCCCGCCGCGTCTGGCTCAACACCAGCTGTGATCGCTTGATGTGGACCA
GTAAGAAGGCGGGCGTTCCTGCCAATCATGTCAAGGTTCATCAGGTTGCT
CGCATCAAGTGCGCGGACCGCGAGGTGTGCATTGATCTTATTGAGGGGCG
ACGTATCTCGTTGCTGTTTGCCAACGCCGACGAGGCTGCGCTTTGGGTCA
AGGCGCTTAGTTGTCTTGTTCCGCTGCAGGCGAGGATTATTGCGCCGTCG
GTGGTCATTCCGCCCGAGAAGGAACGGGAAGAGTTTACCTTGTCGCATGA
TATGTTCAATGGACGCTCTTTGAGGGAGCATGTTGGAATTGGTAATTATG
TGCTCTTGTGCTCGGCCAAGGACCACCCGGCTGCCAATGGTCACAAGGTT
GTGTTTGCGCGCTCTGACTCATCGTTCTGTACGCTGAGATACGTGCCGAG
AAAACTTGTGCCGTTGTTGCTGCGCTCTCAGGAAGAGATTGCGGTGTTGA
AACGACTCAAGCACCCGAACATTGTGCAATATCATGAGTGTTTATTGGAT
CAACAGCATGGTGGCACTTACCTGACGTTTGAGTACTTGGCCAGGGGCAC
CTTGATTGATGGTTCCAAGTTGGAGGGTGTTGAACCTATCCACGAACATT
CTGCACGCGAATTGATCACAGATGTGGTTAACGGCCTCGAGTATTTGCAC
AGACTGCGCATTGCTCACGCTGATGTGCGACCGGATAACCTGCTGCGGTC
TGTTGATGGGAGGGTGAAACTGAATCCAATTGGATGTATTACGCATGACT
TCACCGAAATCAAGAACCTTACTACTCTTGTCAAGACCAGATTGGGCGAT
GCATCTCCAGCATTCCTCGCGCCAGAGTTGTGCTGGCTGTGTGATGCGCC
TCCGGCGCACCCCAAGAGTTACGCCATGGATGTTTGGGCCGTCGGCGTCG
TGTTATACTTTATGCTCTATGGACGTGTACCGTTCGGAGGGCGAGACGAC
CAAGAGATTCAGACAGCCATATGCACTCGTAAGCTGAGGTTCCCTCGGCA
CCCGGAAACGTCCAAGAAAGTGCGCAGCCTTCTAAAGGGTGTGCTTGGTG
AAAAGGATCCCAAGACTCGTATTGGATTATCCGAATTGAAGAGACATCCT
TGGTTTGCTGAGGGTGAGTCCGAGCCGTCGAATGCATCGGCGTCTGCTTC
GAATCAGTTGATCAGGTTAACCGTTCCGCAGGAAGAGATTTATTACGCTG
TTCAAAGAGCGAAGATTACTGGATCTCCAGAAAAGTCGTGA

Coding sequence (CDS) from alignment at tig00000056_pilon:662695..664485-

>Ggra6847.t1 ID=Ggra6847.t1|Name=Ggra6847.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1791bp|location=Sequence derived from alignment at tig00000056_pilon:662695..664485- (Gracilaria gracilis GNS1m male)
ATGCACCCACCGCCGTCGCACCCCGCCTCCTCGCGCGCGCACTCGCTGCC
GGGCTCGGACTCCTCGCAGAACAGCGAGCAGCCGCAGCTGCCGGAGGTGC
CGTCCGCCGTGGACGTTGTGCGACAAAACTCCAACTTCTCGCGCTTGAGC
GCGCAGTCGTGGCTCACCGTCGACTCGGCGCACGAGCTGGATGCAGACCC
GCCTTCCGCCAACGCGTCGCCTGCGCGCCCGCCGCCGCCGCCGCCGCCGC
CGCCCGCGTCGCCGCCCGCGTCGCCGGACAAGGCCAGACCCAGTCCGCCG
GTGTCGGTGCCGCTTTACCACGGCTCGTTTTCGGACGCGGGCGACCATGT
GCCGTCGCAGCTGTTCGCTATTGATGTGCATTGCTCCTTGTTGCAACGGC
TCAGGACGCGCCCTTATAGCAGCTTGTCTGTGCTCGAGTGCTGCGCGTTG
CTGCAGGAGGGCGTGGCCGCGCTGAAGAAGAAGAACTTCTTGCGCTTTGG
CGCCCGCCGCGTCTGGCTCAACACCAGCTGTGATCGCTTGATGTGGACCA
GTAAGAAGGCGGGCGTTCCTGCCAATCATGTCAAGGTTCATCAGGTTGCT
CGCATCAAGTGCGCGGACCGCGAGGTGTGCATTGATCTTATTGAGGGGCG
ACGTATCTCGTTGCTGTTTGCCAACGCCGACGAGGCTGCGCTTTGGGTCA
AGGCGCTTAGTTGTCTTGTTCCGCTGCAGGCGAGGATTATTGCGCCGTCG
GTGGTCATTCCGCCCGAGAAGGAACGGGAAGAGTTTACCTTGTCGCATGA
TATGTTCAATGGACGCTCTTTGAGGGAGCATGTTGGAATTGGTAATTATG
TGCTCTTGTGCTCGGCCAAGGACCACCCGGCTGCCAATGGTCACAAGGTT
GTGTTTGCGCGCTCTGACTCATCGTTCTGTACGCTGAGATACGTGCCGAG
AAAACTTGTGCCGTTGTTGCTGCGCTCTCAGGAAGAGATTGCGGTGTTGA
AACGACTCAAGCACCCGAACATTGTGCAATATCATGAGTGTTTATTGGAT
CAACAGCATGGTGGCACTTACCTGACGTTTGAGTACTTGGCCAGGGGCAC
CTTGATTGATGGTTCCAAGTTGGAGGGTGTTGAACCTATCCACGAACATT
CTGCACGCGAATTGATCACAGATGTGGTTAACGGCCTCGAGTATTTGCAC
AGACTGCGCATTGCTCACGCTGATGTGCGACCGGATAACCTGCTGCGGTC
TGTTGATGGGAGGGTGAAACTGAATCCAATTGGATGTATTACGCATGACT
TCACCGAAATCAAGAACCTTACTACTCTTGTCAAGACCAGATTGGGCGAT
GCATCTCCAGCATTCCTCGCGCCAGAGTTGTGCTGGCTGTGTGATGCGCC
TCCGGCGCACCCCAAGAGTTACGCCATGGATGTTTGGGCCGTCGGCGTCG
TGTTATACTTTATGCTCTATGGACGTGTACCGTTCGGAGGGCGAGACGAC
CAAGAGATTCAGACAGCCATATGCACTCGTAAGCTGAGGTTCCCTCGGCA
CCCGGAAACGTCCAAGAAAGTGCGCAGCCTTCTAAAGGGTGTGCTTGGTG
AAAAGGATCCCAAGACTCGTATTGGATTATCCGAATTGAAGAGACATCCT
TGGTTTGCTGAGGGTGAGTCCGAGCCGTCGAATGCATCGGCGTCTGCTTC
GAATCAGTTGATCAGGTTAACCGTTCCGCAGGAAGAGATTTATTACGCTG
TTCAAAGAGCGAAGATTACTGGATCTCCAGAAAAGTCGTGA