Ggra6845.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6845.t1
Unique Name	Ggra6845.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	645

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:658493..660427 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3988.XP_002529591.1
PFAMs	zf-RING_2
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K15691
Evalue	8.92e-23
EggNOG OGs	KOG1645@1\|root,KOG1645@2759\|Eukaryota,37QVD@33090\|Viridiplantae,3GF8W@35493\|Streptophyta,4JRWM@91835\|fabids
EC	2.3.2.27
Description	Zinc finger, C3HC4 type (RING finger)
COG category	O
BRITE	ko00000,ko01000,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6845	Ggra6845	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 658493..660427 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6845.t1.start1	Ggra6845.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 658493..658495 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6845.t1.CDS1	Ggra6845.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 658493..660427 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6845.t1.exon1	Ggra6845.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 658493..660427 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6845.t1.stop1	Ggra6845.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 660425..660427 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6845.t1	Ggra6845.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 658493..660427 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:658493..660427+
coding sequence from alignment at tig00000056_pilon:658493..660427+

mRNA sequence

>Ggra6845.t1 ID=Ggra6845.t1|Name=Ggra6845.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=645bp
MPSPTAPPNGGALQPPSVAQAIGLAIETITGGPSSTAIRDIRPEHIFHID
EEHIEPPLHPQTMPRVGSIQLIRNEDEERHESGSVVTVRSSQGSEEPSPS
PVIKRRRKSKSLPGPEVEKKNETPSEEDGGNCCTICLDPWASSGPHQVCC
MPCGHLFGYSCIKEWIRGGNSRKRECPTCKTPARVKDLRYLFGLPSRLAV
SDVSEIQRLRDELKREKISHETTKIKYQETKKLAKIYREEMRNLQRHGKS
SVQTFGHQNDSQRVETVDNVRLVSIYRTAGASLAVAVDEDASYLFNERVP
GDGPRHRVGRIDIGRPNVPIHSPHTTDKRVNCIKVCRHTCGAVYRHIAVA
STDYSVAILTPNLQRALTLRVPGIPLSCSWLSSRPHLAAVGLVSGEVLMY
DIRHTSTHLYESVLSRNQGSRAVHSLEEVKVDDSQNSSAVLAASPHGVFG
ISFDGYMGAPNVYEVKGGAPEDWAPTSFTVSGNMIAVAARRRGLTNCGSQ
EMGCSLLMHRGIVREGLDLKFGLSLGEPVYTSSQNVPFVYCGIVGGKDDD
LDTMLAYPDKNAQDKLSVWAYKRDAYDGASSWKEQEVLSDSQSQTQGLGN
GDVRAAAGFRLPRSAKINGVPDGTRGIFVTVGGDVIRVFAAGKY*

spliced messenger RNA

>Ggra6845.t1 ID=Ggra6845.t1|Name=Ggra6845.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1935bp|location=Sequence derived from alignment at tig00000056_pilon:658493..660427+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCTCCGACAGCTCCCCCGAACGGTGGTGCCCTACAACCTCCTTC
CGTTGCACAAGCGATTGGGCTGGCGATAGAGACGATCACAGGTGGGCCAT
CCTCTACAGCAATCCGTGATATACGTCCAGAACATATTTTTCATATAGAT
GAAGAACATATTGAACCACCCCTTCACCCTCAGACCATGCCCCGTGTGGG
GTCCATACAGCTTATACGAAATGAGGATGAAGAAAGACATGAAAGCGGAA
GCGTAGTCACTGTGCGATCTTCACAAGGTTCCGAGGAACCGAGCCCATCC
CCCGTAATCAAGCGTCGCCGAAAGAGCAAATCTCTTCCCGGACCAGAAGT
CGAGAAGAAGAATGAAACTCCTTCTGAAGAAGATGGTGGCAACTGCTGTA
CGATATGTTTGGACCCATGGGCGAGCTCTGGTCCTCATCAAGTGTGCTGC
ATGCCGTGTGGCCATTTGTTTGGATATAGTTGCATAAAGGAATGGATTCG
CGGCGGCAACTCTCGAAAACGAGAATGTCCAACTTGTAAGACACCAGCTC
GTGTTAAAGACTTGAGATATCTTTTCGGCCTTCCGTCACGGCTGGCGGTC
TCCGATGTTTCTGAGATACAGCGATTGCGAGACGAGCTCAAGCGAGAAAA
GATATCTCATGAAACCACGAAGATTAAATATCAAGAAACAAAGAAACTGG
CTAAGATATATCGCGAGGAGATGCGGAACCTCCAACGCCATGGAAAGTCT
TCTGTTCAGACGTTTGGACATCAGAATGATTCACAACGTGTTGAAACTGT
GGACAACGTCCGTCTAGTTTCAATATATCGAACCGCCGGTGCTTCTCTGG
CTGTGGCTGTCGATGAGGATGCGTCGTATTTATTCAATGAACGTGTTCCC
GGAGATGGACCGCGACATCGAGTAGGTCGCATAGACATTGGAAGACCAAA
TGTACCCATACACTCGCCACATACCACCGATAAGCGTGTAAACTGCATCA
AAGTATGTCGCCACACATGCGGAGCAGTTTATAGGCATATTGCCGTAGCA
AGCACAGATTATAGTGTGGCCATTTTGACTCCAAATCTTCAACGGGCTCT
AACTCTTCGTGTACCTGGCATCCCGTTATCGTGTTCTTGGCTTTCTAGTC
GTCCGCACTTGGCAGCAGTTGGGCTTGTCTCTGGTGAAGTCTTAATGTAC
GACATCAGGCATACTTCGACACATTTGTACGAATCAGTTTTGTCTCGCAA
TCAAGGATCTCGAGCCGTTCATTCATTAGAGGAAGTCAAAGTTGATGACT
CACAGAACTCCTCCGCAGTTTTGGCAGCCTCGCCTCATGGGGTATTTGGC
ATCTCGTTTGATGGATACATGGGCGCACCAAACGTTTATGAGGTAAAAGG
TGGTGCACCCGAAGACTGGGCTCCCACGAGTTTCACAGTAAGTGGGAACA
TGATCGCCGTTGCTGCAAGGAGGCGCGGTCTCACAAATTGTGGATCTCAA
GAAATGGGATGTTCTCTGTTGATGCACAGAGGTATAGTTAGGGAAGGACT
AGACCTCAAGTTTGGTCTTTCACTCGGCGAACCTGTATACACATCGTCGC
AAAATGTACCTTTCGTGTACTGTGGTATTGTAGGAGGAAAAGACGACGAT
TTAGATACCATGCTCGCATATCCAGATAAGAATGCTCAGGATAAGCTGAG
CGTGTGGGCTTACAAGCGCGATGCGTATGACGGGGCCTCGAGCTGGAAGG
AGCAAGAAGTTCTTTCCGATTCCCAGTCTCAAACTCAAGGCCTAGGTAAT
GGTGACGTTAGAGCTGCAGCAGGATTTCGGCTTCCACGATCAGCGAAGAT
AAACGGTGTGCCCGATGGCACCCGCGGAATTTTTGTTACTGTTGGTGGTG
ATGTCATTCGGGTTTTTGCCGCTGGGAAGTATTGA

protein sequence of Ggra6845.t1

>Ggra6845.t1 ID=Ggra6845.t1|Name=Ggra6845.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=645bp
MPSPTAPPNGGALQPPSVAQAIGLAIETITGGPSSTAIRDIRPEHIFHID
EEHIEPPLHPQTMPRVGSIQLIRNEDEERHESGSVVTVRSSQGSEEPSPS
PVIKRRRKSKSLPGPEVEKKNETPSEEDGGNCCTICLDPWASSGPHQVCC
MPCGHLFGYSCIKEWIRGGNSRKRECPTCKTPARVKDLRYLFGLPSRLAV
SDVSEIQRLRDELKREKISHETTKIKYQETKKLAKIYREEMRNLQRHGKS
SVQTFGHQNDSQRVETVDNVRLVSIYRTAGASLAVAVDEDASYLFNERVP
GDGPRHRVGRIDIGRPNVPIHSPHTTDKRVNCIKVCRHTCGAVYRHIAVA
STDYSVAILTPNLQRALTLRVPGIPLSCSWLSSRPHLAAVGLVSGEVLMY
DIRHTSTHLYESVLSRNQGSRAVHSLEEVKVDDSQNSSAVLAASPHGVFG
ISFDGYMGAPNVYEVKGGAPEDWAPTSFTVSGNMIAVAARRRGLTNCGSQ
EMGCSLLMHRGIVREGLDLKFGLSLGEPVYTSSQNVPFVYCGIVGGKDDD
LDTMLAYPDKNAQDKLSVWAYKRDAYDGASSWKEQEVLSDSQSQTQGLGN
GDVRAAAGFRLPRSAKINGVPDGTRGIFVTVGGDVIRVFAAGKY*

mRNA from alignment at tig00000056_pilon:658493..660427+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6845.t1 ID=Ggra6845.t1|Name=Ggra6845.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1935bp|location=Sequence derived from alignment at tig00000056_pilon:658493..660427+ (Gracilaria gracilis GNS1m male)
ATGCCGTCTCCGACAGCTCCCCCGAACGGTGGTGCCCTACAACCTCCTTC
CGTTGCACAAGCGATTGGGCTGGCGATAGAGACGATCACAGGTGGGCCAT
CCTCTACAGCAATCCGTGATATACGTCCAGAACATATTTTTCATATAGAT
GAAGAACATATTGAACCACCCCTTCACCCTCAGACCATGCCCCGTGTGGG
GTCCATACAGCTTATACGAAATGAGGATGAAGAAAGACATGAAAGCGGAA
GCGTAGTCACTGTGCGATCTTCACAAGGTTCCGAGGAACCGAGCCCATCC
CCCGTAATCAAGCGTCGCCGAAAGAGCAAATCTCTTCCCGGACCAGAAGT
CGAGAAGAAGAATGAAACTCCTTCTGAAGAAGATGGTGGCAACTGCTGTA
CGATATGTTTGGACCCATGGGCGAGCTCTGGTCCTCATCAAGTGTGCTGC
ATGCCGTGTGGCCATTTGTTTGGATATAGTTGCATAAAGGAATGGATTCG
CGGCGGCAACTCTCGAAAACGAGAATGTCCAACTTGTAAGACACCAGCTC
GTGTTAAAGACTTGAGATATCTTTTCGGCCTTCCGTCACGGCTGGCGGTC
TCCGATGTTTCTGAGATACAGCGATTGCGAGACGAGCTCAAGCGAGAAAA
GATATCTCATGAAACCACGAAGATTAAATATCAAGAAACAAAGAAACTGG
CTAAGATATATCGCGAGGAGATGCGGAACCTCCAACGCCATGGAAAGTCT
TCTGTTCAGACGTTTGGACATCAGAATGATTCACAACGTGTTGAAACTGT
GGACAACGTCCGTCTAGTTTCAATATATCGAACCGCCGGTGCTTCTCTGG
CTGTGGCTGTCGATGAGGATGCGTCGTATTTATTCAATGAACGTGTTCCC
GGAGATGGACCGCGACATCGAGTAGGTCGCATAGACATTGGAAGACCAAA
TGTACCCATACACTCGCCACATACCACCGATAAGCGTGTAAACTGCATCA
AAGTATGTCGCCACACATGCGGAGCAGTTTATAGGCATATTGCCGTAGCA
AGCACAGATTATAGTGTGGCCATTTTGACTCCAAATCTTCAACGGGCTCT
AACTCTTCGTGTACCTGGCATCCCGTTATCGTGTTCTTGGCTTTCTAGTC
GTCCGCACTTGGCAGCAGTTGGGCTTGTCTCTGGTGAAGTCTTAATGTAC
GACATCAGGCATACTTCGACACATTTGTACGAATCAGTTTTGTCTCGCAA
TCAAGGATCTCGAGCCGTTCATTCATTAGAGGAAGTCAAAGTTGATGACT
CACAGAACTCCTCCGCAGTTTTGGCAGCCTCGCCTCATGGGGTATTTGGC
ATCTCGTTTGATGGATACATGGGCGCACCAAACGTTTATGAGGTAAAAGG
TGGTGCACCCGAAGACTGGGCTCCCACGAGTTTCACAGTAAGTGGGAACA
TGATCGCCGTTGCTGCAAGGAGGCGCGGTCTCACAAATTGTGGATCTCAA
GAAATGGGATGTTCTCTGTTGATGCACAGAGGTATAGTTAGGGAAGGACT
AGACCTCAAGTTTGGTCTTTCACTCGGCGAACCTGTATACACATCGTCGC
AAAATGTACCTTTCGTGTACTGTGGTATTGTAGGAGGAAAAGACGACGAT
TTAGATACCATGCTCGCATATCCAGATAAGAATGCTCAGGATAAGCTGAG
CGTGTGGGCTTACAAGCGCGATGCGTATGACGGGGCCTCGAGCTGGAAGG
AGCAAGAAGTTCTTTCCGATTCCCAGTCTCAAACTCAAGGCCTAGGTAAT
GGTGACGTTAGAGCTGCAGCAGGATTTCGGCTTCCACGATCAGCGAAGAT
AAACGGTGTGCCCGATGGCACCCGCGGAATTTTTGTTACTGTTGGTGGTG
ATGTCATTCGGGTTTTTGCCGCTGGGAAGTATTGA

Coding sequence (CDS) from alignment at tig00000056_pilon:658493..660427+

>Ggra6845.t1 ID=Ggra6845.t1|Name=Ggra6845.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1935bp|location=Sequence derived from alignment at tig00000056_pilon:658493..660427+ (Gracilaria gracilis GNS1m male)
ATGCCGTCTCCGACAGCTCCCCCGAACGGTGGTGCCCTACAACCTCCTTC
CGTTGCACAAGCGATTGGGCTGGCGATAGAGACGATCACAGGTGGGCCAT
CCTCTACAGCAATCCGTGATATACGTCCAGAACATATTTTTCATATAGAT
GAAGAACATATTGAACCACCCCTTCACCCTCAGACCATGCCCCGTGTGGG
GTCCATACAGCTTATACGAAATGAGGATGAAGAAAGACATGAAAGCGGAA
GCGTAGTCACTGTGCGATCTTCACAAGGTTCCGAGGAACCGAGCCCATCC
CCCGTAATCAAGCGTCGCCGAAAGAGCAAATCTCTTCCCGGACCAGAAGT
CGAGAAGAAGAATGAAACTCCTTCTGAAGAAGATGGTGGCAACTGCTGTA
CGATATGTTTGGACCCATGGGCGAGCTCTGGTCCTCATCAAGTGTGCTGC
ATGCCGTGTGGCCATTTGTTTGGATATAGTTGCATAAAGGAATGGATTCG
CGGCGGCAACTCTCGAAAACGAGAATGTCCAACTTGTAAGACACCAGCTC
GTGTTAAAGACTTGAGATATCTTTTCGGCCTTCCGTCACGGCTGGCGGTC
TCCGATGTTTCTGAGATACAGCGATTGCGAGACGAGCTCAAGCGAGAAAA
GATATCTCATGAAACCACGAAGATTAAATATCAAGAAACAAAGAAACTGG
CTAAGATATATCGCGAGGAGATGCGGAACCTCCAACGCCATGGAAAGTCT
TCTGTTCAGACGTTTGGACATCAGAATGATTCACAACGTGTTGAAACTGT
GGACAACGTCCGTCTAGTTTCAATATATCGAACCGCCGGTGCTTCTCTGG
CTGTGGCTGTCGATGAGGATGCGTCGTATTTATTCAATGAACGTGTTCCC
GGAGATGGACCGCGACATCGAGTAGGTCGCATAGACATTGGAAGACCAAA
TGTACCCATACACTCGCCACATACCACCGATAAGCGTGTAAACTGCATCA
AAGTATGTCGCCACACATGCGGAGCAGTTTATAGGCATATTGCCGTAGCA
AGCACAGATTATAGTGTGGCCATTTTGACTCCAAATCTTCAACGGGCTCT
AACTCTTCGTGTACCTGGCATCCCGTTATCGTGTTCTTGGCTTTCTAGTC
GTCCGCACTTGGCAGCAGTTGGGCTTGTCTCTGGTGAAGTCTTAATGTAC
GACATCAGGCATACTTCGACACATTTGTACGAATCAGTTTTGTCTCGCAA
TCAAGGATCTCGAGCCGTTCATTCATTAGAGGAAGTCAAAGTTGATGACT
CACAGAACTCCTCCGCAGTTTTGGCAGCCTCGCCTCATGGGGTATTTGGC
ATCTCGTTTGATGGATACATGGGCGCACCAAACGTTTATGAGGTAAAAGG
TGGTGCACCCGAAGACTGGGCTCCCACGAGTTTCACAGTAAGTGGGAACA
TGATCGCCGTTGCTGCAAGGAGGCGCGGTCTCACAAATTGTGGATCTCAA
GAAATGGGATGTTCTCTGTTGATGCACAGAGGTATAGTTAGGGAAGGACT
AGACCTCAAGTTTGGTCTTTCACTCGGCGAACCTGTATACACATCGTCGC
AAAATGTACCTTTCGTGTACTGTGGTATTGTAGGAGGAAAAGACGACGAT
TTAGATACCATGCTCGCATATCCAGATAAGAATGCTCAGGATAAGCTGAG
CGTGTGGGCTTACAAGCGCGATGCGTATGACGGGGCCTCGAGCTGGAAGG
AGCAAGAAGTTCTTTCCGATTCCCAGTCTCAAACTCAAGGCCTAGGTAAT
GGTGACGTTAGAGCTGCAGCAGGATTTCGGCTTCCACGATCAGCGAAGAT
AAACGGTGTGCCCGATGGCACCCGCGGAATTTTTGTTACTGTTGGTGGTG
ATGTCATTCGGGTTTTTGCCGCTGGGAAGTATTGA