Ggra6843.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6843.t1
Unique NameGgra6843.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length185
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:654212..654766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6843Ggra6843Gracilaria gracilis GNS1m malegenetig00000056_pilon 654212..654766 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6843.t1.start1Ggra6843.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 654212..654214 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6843.t1.CDS1Ggra6843.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 654212..654766 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6843.t1.exon1Ggra6843.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 654212..654766 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6843.t1.stop1Ggra6843.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 654764..654766 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6843.t1Ggra6843.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 654212..654766 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6843.t1 ID=Ggra6843.t1|Name=Ggra6843.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=185bp
MSSKQGKPSSSSSSSSSSKSASLHRTQSHHRSHKSSSSASSSSSASASAS
ASAARSPPKQSYPYQSSSSGPHAGDDTAPLFPTPASLDALRPKRSAPIDI
PKRPPRPAPPISLSYSESLAAAKAELDPKNRPPGTVNPLITMPEGSFIPP
HILAERARGPPKMARSFPGKQRFKDMGNPPDWWY*
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spliced messenger RNA

>Ggra6843.t1 ID=Ggra6843.t1|Name=Ggra6843.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=555bp|location=Sequence derived from alignment at tig00000056_pilon:654212..654766+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCCAAGCAGGGCAAGCCTtcttcgtcgtcgtcctcctcctcctc
ctccAAGTCAGCCTCTCTGCACCGCACGCAGTCGCACCATCGCTCACACA
AGTCGTCGTCGTCGGCTTCTTCCTCCTcgtctgcgtctgcgtctgcgtct
gcgtcCGCCGCTAGATCGCCTCCGAAGCAGTCGTACCCGTATCAGTCCAG
CTCCTCCGGTCCGCACGCGGGTGACGACACCGCCCCGCTGTTCCCCACGC
CAGCCTCGCTGGACGCCTTGCGCCCGAAGCGCTCCGCGCCCATCGATATT
CCCAAACGTCCGCCCAGACCAGCGCCGCCCATATCGCTGTCGTACTCGGA
GAGTCTGGCAGCCGCCAAGGCAGAGCTAGATCCGAAGAACAGGCCGCCGG
GAACCGTCAACCCGCTCATCACCATGCCCGAGGGCTCGTTCATACCGCCC
CACATTCTTGCTGAACGGGCGCGTGGCCCGCCGAAGATGGCCAGGTCCTT
CCCTGGTAAACAGAGGTTCAAGGACATGGGTAACCCTCCGGACTGGTGGT
ATTAG
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protein sequence of Ggra6843.t1

>Ggra6843.t1 ID=Ggra6843.t1|Name=Ggra6843.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=185bp
MSSKQGKPSSSSSSSSSSKSASLHRTQSHHRSHKSSSSASSSSSASASAS
ASAARSPPKQSYPYQSSSSGPHAGDDTAPLFPTPASLDALRPKRSAPIDI
PKRPPRPAPPISLSYSESLAAAKAELDPKNRPPGTVNPLITMPEGSFIPP
HILAERARGPPKMARSFPGKQRFKDMGNPPDWWY*
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mRNA from alignment at tig00000056_pilon:654212..654766+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6843.t1 ID=Ggra6843.t1|Name=Ggra6843.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=555bp|location=Sequence derived from alignment at tig00000056_pilon:654212..654766+ (Gracilaria gracilis GNS1m male)
ATGTCTTCCAAGCAGGGCAAGCCTtcttcgtcgtcgtcctcctcctcctc
ctccAAGTCAGCCTCTCTGCACCGCACGCAGTCGCACCATCGCTCACACA
AGTCGTCGTCGTCGGCTTCTTCCTCCTcgtctgcgtctgcgtctgcgtct
gcgtcCGCCGCTAGATCGCCTCCGAAGCAGTCGTACCCGTATCAGTCCAG
CTCCTCCGGTCCGCACGCGGGTGACGACACCGCCCCGCTGTTCCCCACGC
CAGCCTCGCTGGACGCCTTGCGCCCGAAGCGCTCCGCGCCCATCGATATT
CCCAAACGTCCGCCCAGACCAGCGCCGCCCATATCGCTGTCGTACTCGGA
GAGTCTGGCAGCCGCCAAGGCAGAGCTAGATCCGAAGAACAGGCCGCCGG
GAACCGTCAACCCGCTCATCACCATGCCCGAGGGCTCGTTCATACCGCCC
CACATTCTTGCTGAACGGGCGCGTGGCCCGCCGAAGATGGCCAGGTCCTT
CCCTGGTAAACAGAGGTTCAAGGACATGGGTAACCCTCCGGACTGGTGGT
ATTAG
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Coding sequence (CDS) from alignment at tig00000056_pilon:654212..654766+

>Ggra6843.t1 ID=Ggra6843.t1|Name=Ggra6843.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=555bp|location=Sequence derived from alignment at tig00000056_pilon:654212..654766+ (Gracilaria gracilis GNS1m male)
ATGTCTTCCAAGCAGGGCAAGCCTtcttcgtcgtcgtcctcctcctcctc
ctccAAGTCAGCCTCTCTGCACCGCACGCAGTCGCACCATCGCTCACACA
AGTCGTCGTCGTCGGCTTCTTCCTCCTcgtctgcgtctgcgtctgcgtct
gcgtcCGCCGCTAGATCGCCTCCGAAGCAGTCGTACCCGTATCAGTCCAG
CTCCTCCGGTCCGCACGCGGGTGACGACACCGCCCCGCTGTTCCCCACGC
CAGCCTCGCTGGACGCCTTGCGCCCGAAGCGCTCCGCGCCCATCGATATT
CCCAAACGTCCGCCCAGACCAGCGCCGCCCATATCGCTGTCGTACTCGGA
GAGTCTGGCAGCCGCCAAGGCAGAGCTAGATCCGAAGAACAGGCCGCCGG
GAACCGTCAACCCGCTCATCACCATGCCCGAGGGCTCGTTCATACCGCCC
CACATTCTTGCTGAACGGGCGCGTGGCCCGCCGAAGATGGCCAGGTCCTT
CCCTGGTAAACAGAGGTTCAAGGACATGGGTAACCCTCCGGACTGGTGGT
ATTAG
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