Ggra6838.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6838.t1
Unique Name	Ggra6838.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	525

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:642266..643840 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3218.PP1S15_447V6.1
Preferred name	NOP56
PFAMs	NOP5NT,Nop
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K14564
KEGG Pathway	ko03008,map03008
Evalue	9.2e-182
EggNOG OGs	COG1498@1\|root,KOG2573@2759\|Eukaryota,37JCN@33090\|Viridiplantae,3GGSS@35493\|Streptophyta
Description	Nucleolar protein
COG category	AJ
BRITE	ko00000,ko00001,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6838	Ggra6838	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 642266..643840 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6838.t1.start1	Ggra6838.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 642266..642268 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6838.t1.CDS1	Ggra6838.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 642266..643840 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6838.t1.exon1	Ggra6838.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 642266..643840 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6838.t1.stop1	Ggra6838.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 643838..643840 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6838.t1	Ggra6838.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 642266..643840 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:642266..643840+
coding sequence from alignment at tig00000056_pilon:642266..643840+

mRNA sequence

>Ggra6838.t1 ID=Ggra6838.t1|Name=Ggra6838.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=525bp
MVLFLLSESALGYSLFEVTENDVIASQVDSMQAAIAEYGRFAKMVKLKAF
APFTAAEHALENVNLISEGAVSDFLKNFLETNLPLSKSKHAQLGVHRDPK
LKSSVSEALGSKIAVVSDEQCDELLRGIRMHLDRFISGLKATDAIKAQLG
LAHSYSRSKVKFNVHKADNMIIQSIALLDQLDKDINTFAMRIREWYSWHF
PELVKVVPDNIQYARVVGVVRDKSSLSEDSVPELDKVLMNEDQARSVISA
AESSMGADISDVDLVNIDMFASRVVQLAEYRAGLHNYLRSKMSVVAPNLA
ALIGEQVGARLISHAGSLTSLAKYPASTVQILGAEKALFRALKTKGKTPK
YGLLYHSSYIGKAKQKNKGRISRYLANKCSIASRMDCFAEVTTDVFGRKL
REQVEDRLKFYESGKAPRKNIDVMHEAVKELEQEQPPSNDVDMKDKDDEK
DEVAEQEEDGDVNMKTPEDQPKKKKKKDKSSSKRDKSSSKKDKSSSKKDK
SSKDKKRKRESSSSKEKKSKKLDS*

spliced messenger RNA

>Ggra6838.t1 ID=Ggra6838.t1|Name=Ggra6838.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1575bp|location=Sequence derived from alignment at tig00000056_pilon:642266..643840+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCTTTTCCTTCTTTCCGAATCGGCCCTTGGCTATTCTCTGTTCGA
AGTCACAGAGAATGATGTCATTGCATCTCAGGTGGACAGTATGCAAGCTG
CAATAGCTGAATACGGCCGGTTCGCGAAAATGGTTAAGCTTAAGGCTTTC
GCGCCGTTCACGGCAGCAGAACACGCTTTAGAGAACGTCAATCTCATTTC
TGAAGGCGCCGTCTCAGATTTTCTGAAGAACTTCTTGGAAACAAACTTGC
CTCTATCCAAATCCAAGCATGCGCAGTTAGGGGTTCATCGTGATCCCAAG
CTGAAGAGCTCGGTATCCGAGGCTCTTGGGTCTAAGATCGCAGTGGTTTC
AGATGAACAGTGTGATGAATTGCTGCGTGGTATTCGTATGCATCTCGATC
GCTTTATTAGTGGTCTCAAAGCTACGGATGCAATCAAGGCTCAGTTGGGT
CTTGCTCACTCGTATTCCAGATCAAAAGTTAAGTTCAACGTGCACAAGGC
TGACAATATGATCATCCAATCTATTGCGTTGCTCGACCAGCTTGACAAGG
ACATTAACACGTTTGCGATGCGCATACGAGAATGGTATTCATGGCATTTT
CCGGAGCTTGTCAAAGTCGTACCAGACAATATTCAGTACGCTCGAGTGGT
GGGCGTCGTACGTGACAAATCTAGCCTTTCCGAAGATTCCGTTCCTGAGC
TTGACAAAGTTCTCATGAACGAAGACCAAGCAAGATCTGTTATAAGCGCC
GCTGAGTCTTCGATGGGCGCAGATATCTCAGATGTTGATCTGGTTAACAT
TGATATGTTCGCCTCAAGAGTTGTTCAGCTCGCGGAGTATCGCGCAGGCC
TGCACAACTACTTAAGATCAAAGATGTCAGTTGTTGCACCGAATCTAGCC
GCGCTAATTGGAGAACAGGTAGGTGCGAGGCTAATATCACATGCGGGTTC
TCTCACTTCTCTTGCGAAGTACCCCGCATCCACAGTTCAAATTCTCGGCG
CTGAAAAGGCCCTCTTCCGCGCCCTAAAGACAAAGGGAAAGACCCCGAAG
TATGGGTTGTTGTATCACTCTTCATATATTGGAAAAGCGAAGCAGAAGAA
CAAAGGCCGGATATCGAGGTACCTGGCAAATAAATGTTCAATAGCGTCAC
GTATGGATTGTTTCGCTGAAGTTACAACCGATGTATTCGGCCGGAAACTA
CGTGAGCAGGTCGAAGACCGACTTAAATTTTATGAAAGCGGAAAAGCCCC
TCGGAAAAACATTGATGTCATGCACGAGGCTGTGAAAGAATTAGAACAAG
AGCAACCTCCTTCAAACGATGTGGATATGAAAGATAAGGACGACGAAAAG
GATGAAGTCGCAGAACAGGAAGAGGATGGAGATGTGAATATGAAAACTCC
AGAGGACCAGCCCaagaaaaagaagaagaaggacaagTCATCATCGAAGA
GGGACAAATCATCGTCAAAGAAGGACAAATCTTCGTCAAAGAAGGACAAA
TCAAGCAAAGACAAGAAGCGCAAGCGAGAATCTTCGTCGAGCAAAGAAAA
GAAAAGCAAGAAGTTAGATTCGTAA

protein sequence of Ggra6838.t1

>Ggra6838.t1 ID=Ggra6838.t1|Name=Ggra6838.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=525bp
MVLFLLSESALGYSLFEVTENDVIASQVDSMQAAIAEYGRFAKMVKLKAF
APFTAAEHALENVNLISEGAVSDFLKNFLETNLPLSKSKHAQLGVHRDPK
LKSSVSEALGSKIAVVSDEQCDELLRGIRMHLDRFISGLKATDAIKAQLG
LAHSYSRSKVKFNVHKADNMIIQSIALLDQLDKDINTFAMRIREWYSWHF
PELVKVVPDNIQYARVVGVVRDKSSLSEDSVPELDKVLMNEDQARSVISA
AESSMGADISDVDLVNIDMFASRVVQLAEYRAGLHNYLRSKMSVVAPNLA
ALIGEQVGARLISHAGSLTSLAKYPASTVQILGAEKALFRALKTKGKTPK
YGLLYHSSYIGKAKQKNKGRISRYLANKCSIASRMDCFAEVTTDVFGRKL
REQVEDRLKFYESGKAPRKNIDVMHEAVKELEQEQPPSNDVDMKDKDDEK
DEVAEQEEDGDVNMKTPEDQPKKKKKKDKSSSKRDKSSSKKDKSSSKKDK
SSKDKKRKRESSSSKEKKSKKLDS*

mRNA from alignment at tig00000056_pilon:642266..643840+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6838.t1 ID=Ggra6838.t1|Name=Ggra6838.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1575bp|location=Sequence derived from alignment at tig00000056_pilon:642266..643840+ (Gracilaria gracilis GNS1m male)
ATGGTTCTTTTCCTTCTTTCCGAATCGGCCCTTGGCTATTCTCTGTTCGA
AGTCACAGAGAATGATGTCATTGCATCTCAGGTGGACAGTATGCAAGCTG
CAATAGCTGAATACGGCCGGTTCGCGAAAATGGTTAAGCTTAAGGCTTTC
GCGCCGTTCACGGCAGCAGAACACGCTTTAGAGAACGTCAATCTCATTTC
TGAAGGCGCCGTCTCAGATTTTCTGAAGAACTTCTTGGAAACAAACTTGC
CTCTATCCAAATCCAAGCATGCGCAGTTAGGGGTTCATCGTGATCCCAAG
CTGAAGAGCTCGGTATCCGAGGCTCTTGGGTCTAAGATCGCAGTGGTTTC
AGATGAACAGTGTGATGAATTGCTGCGTGGTATTCGTATGCATCTCGATC
GCTTTATTAGTGGTCTCAAAGCTACGGATGCAATCAAGGCTCAGTTGGGT
CTTGCTCACTCGTATTCCAGATCAAAAGTTAAGTTCAACGTGCACAAGGC
TGACAATATGATCATCCAATCTATTGCGTTGCTCGACCAGCTTGACAAGG
ACATTAACACGTTTGCGATGCGCATACGAGAATGGTATTCATGGCATTTT
CCGGAGCTTGTCAAAGTCGTACCAGACAATATTCAGTACGCTCGAGTGGT
GGGCGTCGTACGTGACAAATCTAGCCTTTCCGAAGATTCCGTTCCTGAGC
TTGACAAAGTTCTCATGAACGAAGACCAAGCAAGATCTGTTATAAGCGCC
GCTGAGTCTTCGATGGGCGCAGATATCTCAGATGTTGATCTGGTTAACAT
TGATATGTTCGCCTCAAGAGTTGTTCAGCTCGCGGAGTATCGCGCAGGCC
TGCACAACTACTTAAGATCAAAGATGTCAGTTGTTGCACCGAATCTAGCC
GCGCTAATTGGAGAACAGGTAGGTGCGAGGCTAATATCACATGCGGGTTC
TCTCACTTCTCTTGCGAAGTACCCCGCATCCACAGTTCAAATTCTCGGCG
CTGAAAAGGCCCTCTTCCGCGCCCTAAAGACAAAGGGAAAGACCCCGAAG
TATGGGTTGTTGTATCACTCTTCATATATTGGAAAAGCGAAGCAGAAGAA
CAAAGGCCGGATATCGAGGTACCTGGCAAATAAATGTTCAATAGCGTCAC
GTATGGATTGTTTCGCTGAAGTTACAACCGATGTATTCGGCCGGAAACTA
CGTGAGCAGGTCGAAGACCGACTTAAATTTTATGAAAGCGGAAAAGCCCC
TCGGAAAAACATTGATGTCATGCACGAGGCTGTGAAAGAATTAGAACAAG
AGCAACCTCCTTCAAACGATGTGGATATGAAAGATAAGGACGACGAAAAG
GATGAAGTCGCAGAACAGGAAGAGGATGGAGATGTGAATATGAAAACTCC
AGAGGACCAGCCCaagaaaaagaagaagaaggacaagTCATCATCGAAGA
GGGACAAATCATCGTCAAAGAAGGACAAATCTTCGTCAAAGAAGGACAAA
TCAAGCAAAGACAAGAAGCGCAAGCGAGAATCTTCGTCGAGCAAAGAAAA
GAAAAGCAAGAAGTTAGATTCGTAA

Coding sequence (CDS) from alignment at tig00000056_pilon:642266..643840+

>Ggra6838.t1 ID=Ggra6838.t1|Name=Ggra6838.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1575bp|location=Sequence derived from alignment at tig00000056_pilon:642266..643840+ (Gracilaria gracilis GNS1m male)
ATGGTTCTTTTCCTTCTTTCCGAATCGGCCCTTGGCTATTCTCTGTTCGA
AGTCACAGAGAATGATGTCATTGCATCTCAGGTGGACAGTATGCAAGCTG
CAATAGCTGAATACGGCCGGTTCGCGAAAATGGTTAAGCTTAAGGCTTTC
GCGCCGTTCACGGCAGCAGAACACGCTTTAGAGAACGTCAATCTCATTTC
TGAAGGCGCCGTCTCAGATTTTCTGAAGAACTTCTTGGAAACAAACTTGC
CTCTATCCAAATCCAAGCATGCGCAGTTAGGGGTTCATCGTGATCCCAAG
CTGAAGAGCTCGGTATCCGAGGCTCTTGGGTCTAAGATCGCAGTGGTTTC
AGATGAACAGTGTGATGAATTGCTGCGTGGTATTCGTATGCATCTCGATC
GCTTTATTAGTGGTCTCAAAGCTACGGATGCAATCAAGGCTCAGTTGGGT
CTTGCTCACTCGTATTCCAGATCAAAAGTTAAGTTCAACGTGCACAAGGC
TGACAATATGATCATCCAATCTATTGCGTTGCTCGACCAGCTTGACAAGG
ACATTAACACGTTTGCGATGCGCATACGAGAATGGTATTCATGGCATTTT
CCGGAGCTTGTCAAAGTCGTACCAGACAATATTCAGTACGCTCGAGTGGT
GGGCGTCGTACGTGACAAATCTAGCCTTTCCGAAGATTCCGTTCCTGAGC
TTGACAAAGTTCTCATGAACGAAGACCAAGCAAGATCTGTTATAAGCGCC
GCTGAGTCTTCGATGGGCGCAGATATCTCAGATGTTGATCTGGTTAACAT
TGATATGTTCGCCTCAAGAGTTGTTCAGCTCGCGGAGTATCGCGCAGGCC
TGCACAACTACTTAAGATCAAAGATGTCAGTTGTTGCACCGAATCTAGCC
GCGCTAATTGGAGAACAGGTAGGTGCGAGGCTAATATCACATGCGGGTTC
TCTCACTTCTCTTGCGAAGTACCCCGCATCCACAGTTCAAATTCTCGGCG
CTGAAAAGGCCCTCTTCCGCGCCCTAAAGACAAAGGGAAAGACCCCGAAG
TATGGGTTGTTGTATCACTCTTCATATATTGGAAAAGCGAAGCAGAAGAA
CAAAGGCCGGATATCGAGGTACCTGGCAAATAAATGTTCAATAGCGTCAC
GTATGGATTGTTTCGCTGAAGTTACAACCGATGTATTCGGCCGGAAACTA
CGTGAGCAGGTCGAAGACCGACTTAAATTTTATGAAAGCGGAAAAGCCCC
TCGGAAAAACATTGATGTCATGCACGAGGCTGTGAAAGAATTAGAACAAG
AGCAACCTCCTTCAAACGATGTGGATATGAAAGATAAGGACGACGAAAAG
GATGAAGTCGCAGAACAGGAAGAGGATGGAGATGTGAATATGAAAACTCC
AGAGGACCAGCCCaagaaaaagaagaagaaggacaagTCATCATCGAAGA
GGGACAAATCATCGTCAAAGAAGGACAAATCTTCGTCAAAGAAGGACAAA
TCAAGCAAAGACAAGAAGCGCAAGCGAGAATCTTCGTCGAGCAAAGAAAA
GAAAAGCAAGAAGTTAGATTCGTAA